# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 340 HTH_DeoR PF08220.7 57 2.6e-05 11.8 0.0 1 2 0.031 0.093 0.4 0.0 11 28 144 161 141 170 0.86 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_DeoR PF08220.7 57 2.6e-05 11.8 0.0 2 2 0.0001 0.00031 8.3 0.0 16 33 305 322 303 327 0.92 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_38 PF13936.1 44 4.8e-06 14.2 0.1 1 2 0.031 0.094 0.4 0.0 16 35 143 162 139 174 0.68 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_38 PF13936.1 44 4.8e-06 14.2 0.1 2 2 2.4e-05 7.2e-05 10.4 0.0 9 40 292 323 289 325 0.90 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 Sigma70_r4_2 PF08281.7 54 1e-08 22.6 0.1 1 2 0.012 0.035 1.7 0.0 23 41 144 162 139 166 0.84 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 Sigma70_r4_2 PF08281.7 54 1e-08 22.6 0.1 2 2 8.7e-08 2.6e-07 18.1 0.0 14 47 292 324 290 325 0.94 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 Terminase_5 PF06056.7 58 9.9e-07 16.3 0.0 1 1 9.2e-07 2.8e-06 14.9 0.0 1 36 291 326 291 331 0.92 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_Tnp_1 PF01527.15 76 1.2e-05 13.2 0.1 1 1 1.1e-05 3.4e-05 11.8 0.1 9 44 290 324 283 333 0.87 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 GerE PF00196.14 58 1e-06 16.1 0.0 1 2 0.0028 0.0085 3.5 0.0 8 32 137 161 136 163 0.95 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 GerE PF00196.14 58 1e-06 16.1 0.0 2 2 2.6e-05 7.9e-05 10.0 0.0 11 36 296 321 290 326 0.86 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 Sigma70_r4 PF04545.11 50 3.7e-06 14.3 0.0 1 2 0.00029 0.00088 6.7 0.0 9 35 137 162 136 170 0.77 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 Sigma70_r4 PF04545.11 50 3.7e-06 14.3 0.0 2 2 0.00086 0.0026 5.2 0.0 10 39 294 322 290 326 0.79 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_23 PF13384.1 50 3.1e-11 30.8 0.3 1 1 5.8e-11 1.8e-10 28.4 0.0 4 38 290 324 287 328 0.93 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_29 PF13551.1 112 7.5e-06 14.1 1.3 1 2 0.053 0.16 0.2 0.1 25 71 241 288 229 300 0.72 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_29 PF13551.1 112 7.5e-06 14.1 1.3 2 2 1.9e-05 5.6e-05 11.3 0.1 1 34 293 325 293 330 0.84 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_28 PF13518.1 52 9.2e-08 20.1 1.1 1 1 7e-08 2.1e-07 19.0 0.1 1 34 292 325 292 330 0.93 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_Tnp_ISL3 PF13542.1 52 1.5e-05 12.2 0.5 1 1 1.5e-05 4.5e-05 10.7 0.3 28 49 304 325 293 327 0.84 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_17 PF12728.2 51 7.2e-08 20.7 0.5 1 3 0.0015 0.0045 5.3 0.1 2 16 148 162 147 165 0.91 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_17 PF12728.2 51 7.2e-08 20.7 0.5 2 3 0.055 0.16 0.3 0.0 13 25 182 194 177 198 0.84 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_17 PF12728.2 51 7.2e-08 20.7 0.5 3 3 3.1e-05 9.4e-05 10.7 0.0 3 24 305 326 304 336 0.90 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_11 PF08279.7 55 2.5e-05 11.9 0.1 1 2 0.013 0.04 1.7 0.0 13 28 144 160 136 169 0.84 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 HTH_11 PF08279.7 55 2.5e-05 11.9 0.1 2 2 0.00022 0.00066 7.4 0.0 17 34 305 322 302 326 0.89 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 Sigma70_ECF PF07638.6 185 9.1e-06 13.4 0.2 1 2 0.031 0.094 0.3 0.0 151 176 147 175 137 184 0.75 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 1_2 - 340 Sigma70_ECF PF07638.6 185 9.1e-06 13.4 0.2 2 2 2.1e-05 6.3e-05 10.6 0.1 135 181 288 333 264 336 0.80 # 803 # 1822 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/afe63991-6f9a-483a-bf70-d857afcc4287 # Target file: checkm_output/bins/pm1578/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1578/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/afe63991-6f9a-483a-bf70-d857afcc4287 checkm_output/bins/pm1578/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:46:37 2017 # [ok]