# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 577 HTH_38 PF13936.1 44 1.4e-06 19.4 0.0 1 1 9.4e-08 3.6e-06 18.1 0.0 14 43 12 41 7 42 0.85 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_1 - 85 zf-GRF PF06839.7 45 4.4e-05 15.0 2.2 1 1 1.7e-06 6.3e-05 14.5 2.2 3 32 4 36 2 40 0.89 # 37 # 291 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_30 - 324 MethyltransfD12 PF02086.10 260 1.7e-61 199.5 0.0 1 1 5.1e-63 2e-61 199.2 0.0 1 259 8 265 8 266 0.93 # 27206 # 28177 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_24 - 577 Sigma70_r4_2 PF08281.7 54 1.4e-06 19.3 0.0 1 1 1.2e-07 4.5e-06 17.7 0.0 23 49 15 41 13 41 0.91 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_24 - 577 Terminase_5 PF06056.7 58 4.9e-28 88.1 0.5 1 1 2.5e-29 9.5e-28 87.2 0.5 2 58 7 63 6 63 0.98 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_37 - 289 TIGR00575 TIGR00575 652 8.6e-09 25.4 0.0 1 1 2.8e-10 1.1e-08 25.1 0.0 588 652 2 66 1 66 0.93 # 30461 # 31327 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.422 1_24 - 577 HTH_Tnp_1 PF01527.15 76 4.5e-06 18.2 0.1 1 1 2.8e-07 1e-05 17.0 0.1 21 62 16 56 7 69 0.78 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_1 - 85 Ogr_Delta PF04606.7 47 2.2e-15 47.6 5.4 1 1 7.2e-17 2.7e-15 47.4 5.4 1 45 3 49 3 51 0.94 # 37 # 291 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_27 - 333 DUF955 PF06114.8 122 1.3e-10 32.6 0.0 1 1 5.9e-12 2.3e-10 31.9 0.0 2 85 143 234 142 249 0.88 # 22345 # 23343 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.462 1_35 - 128 HTH_3 PF01381.17 55 4.2e-10 31.0 0.1 1 1 1.9e-11 7.2e-10 30.2 0.1 1 47 9 55 9 56 0.98 # 29422 # 29805 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.482 1_24 - 577 HTH_23 PF13384.1 50 1.6e-10 32.0 0.4 1 1 1.9e-11 7.3e-10 29.9 0.0 6 40 7 41 3 46 0.93 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_24 - 577 HTH_7 PF02796.10 45 2.6e-05 15.6 0.2 1 2 2e-05 0.00076 11.0 0.0 12 39 9 36 8 40 0.95 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_24 - 577 HTH_7 PF02796.10 45 2.6e-05 15.6 0.2 2 2 0.016 0.6 1.7 0.1 2 20 103 122 103 122 0.93 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_35 - 128 HTH_19 PF12844.2 64 3.2e-11 34.8 0.0 1 1 1.1e-12 4.3e-11 34.3 0.0 1 61 6 65 6 68 0.91 # 29422 # 29805 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.482 1_24 - 577 HTH_29 PF13551.1 112 6.5e-07 21.1 0.8 1 2 2.8e-07 1.1e-05 17.2 0.0 3 77 10 73 8 92 0.73 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_24 - 577 HTH_29 PF13551.1 112 6.5e-07 21.1 0.8 2 2 0.011 0.4 2.4 0.3 31 76 83 129 79 154 0.70 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_29 - 434 PAPS_reduct PF01507.14 174 1.9e-30 97.5 0.0 1 1 9.5e-32 3.6e-30 96.6 0.0 1 172 40 293 40 295 0.93 # 25905 # 27206 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_29 - 434 QueC PF06508.8 210 1.9e-07 22.1 0.1 1 2 2.1e-08 8.1e-07 20.0 0.0 1 62 40 102 40 127 0.90 # 25905 # 27206 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_29 - 434 QueC PF06508.8 210 1.9e-07 22.1 0.1 2 2 0.053 2 -0.9 0.0 157 201 256 297 254 301 0.71 # 25905 # 27206 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_29 - 434 NAD_synthase PF02540.12 242 3e-06 17.8 0.0 1 2 1e-06 3.8e-05 14.2 0.0 17 77 37 96 21 177 0.86 # 25905 # 27206 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_29 - 434 NAD_synthase PF02540.12 242 3e-06 17.8 0.0 2 2 0.032 1.2 -0.6 0.0 147 173 253 280 251 285 0.83 # 25905 # 27206 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_24 - 577 HTH_28 PF13518.1 52 2.6e-07 22.2 0.1 1 1 1.7e-08 6.5e-07 20.9 0.1 2 35 8 41 7 46 0.92 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_35 - 128 HTH_31 PF13560.1 64 2.9e-08 25.5 0.2 1 1 7.5e-10 2.9e-08 25.5 0.2 2 51 5 53 4 57 0.94 # 29422 # 29805 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.482 1_24 - 577 Terminase_6 PF03237.10 384 3.8e-82 267.5 0.4 1 1 1.2e-83 4.6e-82 267.3 0.4 1 384 144 561 144 561 0.95 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_24 - 577 DUF1323 PF07037.6 122 3.5e-05 15.5 0.0 1 1 3.1e-06 0.00012 13.9 0.0 3 46 21 66 19 85 0.83 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_24 - 577 HTH_17 PF12728.2 51 2.6e-05 16.0 0.1 1 2 6.7e-05 0.0025 9.7 0.0 4 22 21 39 19 46 0.87 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_24 - 577 HTH_17 PF12728.2 51 2.6e-05 16.0 0.1 2 2 0.0067 0.25 3.2 0.1 26 47 145 166 130 169 0.74 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 1_1 - 85 Zn_Tnp_IS1595 PF12760.2 46 0.00011 13.5 3.1 1 1 3.9e-06 0.00015 13.2 3.1 19 45 2 39 1 40 0.86 # 37 # 291 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_29 - 434 Asn_synthase PF00733.16 255 8.9e-06 16.8 0.0 1 2 7.5e-07 2.8e-05 15.2 0.0 15 87 36 111 20 128 0.87 # 25905 # 27206 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_29 - 434 Asn_synthase PF00733.16 255 8.9e-06 16.8 0.0 2 2 0.083 3.1 -1.3 0.0 120 150 219 251 195 332 0.72 # 25905 # 27206 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_24 - 577 Phage_terminase PF10668.4 60 3.8e-06 18.2 0.1 1 1 3.1e-07 1.2e-05 16.7 0.1 9 51 8 47 7 60 0.81 # 18478 # 20208 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/3b8fc524-b039-43d2-883e-e40a8047778b # Target file: checkm_output/bins/pm1566/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1566/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3b8fc524-b039-43d2-883e-e40a8047778b checkm_output/bins/pm1566/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:46:30 2017 # [ok]