# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_47 - 110 zf-ribbon_3 PF13248.1 26 6.8e-07 20.6 1.0 1 1 1.8e-08 1.1e-06 20.0 1.0 2 25 62 85 61 86 0.89 # 34880 # 35209 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_30 - 158 Methyltransf_26 PF13659.1 117 1.5e-09 30.1 0.3 1 1 1.6e-10 9.1e-09 27.6 0.3 24 116 23 120 3 121 0.64 # 19248 # 19721 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_30 - 158 Methyltransf_25 PF13649.1 101 2.3e-17 55.4 0.0 1 1 5.2e-19 3e-17 55.0 0.0 1 101 6 113 6 113 0.93 # 19248 # 19721 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_5 - 179 DUF1441 PF07278.6 152 3.8e-58 187.6 0.0 1 1 7.5e-60 4.4e-58 187.4 0.0 2 151 13 165 12 166 0.94 # 3955 # 4491 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_36 - 268 KorB PF08535.5 93 1.6e-05 17.2 0.2 1 1 5.6e-07 3.2e-05 16.2 0.2 2 79 139 208 138 222 0.76 # 21762 # 22565 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_25 - 76 HTH_37 PF13744.1 80 1.4e-07 23.4 0.1 1 1 5.7e-09 1.7e-07 23.2 0.1 20 73 4 57 1 59 0.90 # 16305 # 16532 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_24 - 217 HTH_37 PF13744.1 80 0.00014 13.8 0.0 1 1 7.4e-06 0.00022 13.2 0.0 21 74 8 60 1 65 0.88 # 15217 # 15867 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_23 - 62 P22_Cro PF14549.1 60 6.3e-28 88.5 0.6 1 1 2.3e-29 6.7e-28 88.4 0.6 2 59 3 60 2 61 0.97 # 14952 # 15137 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_24 - 217 P22_Cro PF14549.1 60 3.7e-05 15.6 0.3 1 1 8.2e-06 0.00024 13.0 0.1 12 31 21 42 20 54 0.78 # 15217 # 15867 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_24 - 217 HTH_3 PF01381.17 55 2.3e-17 54.8 0.1 1 1 2.1e-18 4.1e-17 54.0 0.1 1 55 10 64 10 64 0.97 # 15217 # 15867 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_25 - 76 HTH_3 PF01381.17 55 1.4e-07 23.5 0.0 1 1 9.6e-09 1.9e-07 23.1 0.0 6 55 12 62 8 62 0.93 # 16305 # 16532 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_23 - 62 HTH_3 PF01381.17 55 0.00013 13.9 0.0 1 1 9.3e-06 0.00018 13.5 0.0 11 29 12 30 2 31 0.91 # 14952 # 15137 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_36 - 268 HTH_23 PF13384.1 50 0.00014 13.6 0.3 1 1 5.3e-05 0.001 10.9 0.0 12 37 134 160 124 163 0.83 # 21762 # 22565 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_23 - 62 HTH_23 PF13384.1 50 0.00019 13.3 0.0 1 1 1.7e-05 0.00033 12.5 0.0 19 38 12 31 2 32 0.90 # 14952 # 15137 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_5 - 179 HTH_23 PF13384.1 50 0.00023 13.0 0.0 1 1 2.2e-05 0.00043 12.1 0.0 18 48 13 40 5 42 0.86 # 3955 # 4491 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_24 - 217 HTH_19 PF12844.2 64 1.7e-11 36.2 0.1 1 1 1.5e-12 4.4e-11 34.9 0.0 1 63 7 69 7 70 0.97 # 15217 # 15867 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_25 - 76 HTH_19 PF12844.2 64 6.7e-05 15.1 0.0 1 1 2.6e-06 7.6e-05 14.9 0.0 10 53 13 57 8 68 0.88 # 16305 # 16532 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_20 - 302 FeoC PF09012.5 69 0.00012 14.0 0.0 1 1 4.1e-06 0.00024 13.0 0.0 16 53 37 74 20 85 0.83 # 13049 # 13954 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.549 1_44 - 1040 TOBE PF03459.12 64 0.00022 13.5 0.0 1 2 8e-05 0.0046 9.3 0.0 14 49 81 116 78 119 0.91 # 30329 # 33448 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_44 - 1040 TOBE PF03459.12 64 0.00022 13.5 0.0 2 2 0.065 3.8 -0.1 0.0 3 20 402 419 400 422 0.83 # 30329 # 33448 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_36 - 268 THF_DHG_CYH_C PF02882.14 161 4.8e-05 14.6 0.4 1 1 1.9e-06 0.00011 13.4 0.3 95 130 171 206 159 242 0.83 # 21762 # 22565 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_4 - 698 Terminase_GpA PF05876.7 557 6.3e-187 614.3 0.0 1 1 1.3e-188 7.6e-187 614.1 0.0 1 557 32 642 32 642 0.96 # 1862 # 3955 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.543 1_25 - 76 HTH_10 PF04967.7 53 0.00025 12.8 0.1 1 1 7e-06 0.00041 12.1 0.1 22 41 14 33 12 38 0.91 # 16305 # 16532 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_24 - 217 HTH_31 PF13560.1 64 9.3e-11 34.0 0.0 1 1 5e-12 1.4e-10 33.4 0.0 3 58 7 61 5 72 0.91 # 15217 # 15867 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_25 - 76 HTH_31 PF13560.1 64 7.7e-05 15.1 0.0 1 1 3.3e-06 9.5e-05 14.8 0.0 12 59 13 60 5 63 0.87 # 16305 # 16532 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_20 - 302 HTH_36 PF13730.1 55 1.5e-13 42.9 0.0 1 1 5.6e-15 3.3e-13 41.8 0.0 7 55 17 65 14 65 0.93 # 13049 # 13954 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.549 1_47 - 110 DZR PF12773.2 50 5.2e-06 18.4 1.2 1 1 1.3e-07 7.3e-06 18.0 1.2 1 24 65 90 56 104 0.73 # 34880 # 35209 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_22 - 177 TIGR03341 TIGR03341 190 3.9e-05 15.3 0.0 1 1 8.1e-07 4.7e-05 15.1 0.0 33 116 6 91 1 116 0.85 # 14328 # 14858 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_23 - 62 Phage_CII PF05269.6 91 0.0002 13.5 0.0 1 1 3.8e-06 0.00022 13.4 0.0 25 55 12 42 3 56 0.84 # 14952 # 15137 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_25 - 76 HTH_26 PF13443.1 63 6.2e-25 79.4 0.1 1 1 2.5e-26 7.2e-25 79.2 0.1 1 62 6 67 6 68 0.97 # 16305 # 16532 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.351 1_24 - 217 HTH_26 PF13443.1 63 3.3e-06 19.4 0.0 1 1 2.1e-07 6e-06 18.6 0.0 7 58 15 65 9 66 0.89 # 15217 # 15867 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_20 - 302 HTH_11 PF08279.7 55 5e-05 15.1 0.0 1 1 1.7e-06 9.6e-05 14.2 0.0 19 45 39 65 37 78 0.83 # 13049 # 13954 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.549 1_20 - 302 MarR_2 PF12802.2 62 0.00037 12.3 0.0 1 1 1.4e-05 0.00081 11.3 0.0 25 54 39 68 19 77 0.84 # 13049 # 13954 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.549 1_47 - 110 zinc_ribbon_2 PF13240.1 23 8e-05 14.3 3.7 1 1 2.7e-06 0.00016 13.3 3.6 1 22 64 85 64 86 0.94 # 34880 # 35209 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_20 - 302 HTH_5 PF01022.15 47 0.00012 14.0 0.1 1 1 4e-06 0.00023 13.0 0.1 21 45 41 65 38 67 0.93 # 13049 # 13954 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.549 1_20 - 302 HTH_Crp_2 PF13545.1 76 0.00016 13.6 0.0 1 1 5.4e-06 0.00032 12.7 0.0 7 59 21 66 19 71 0.87 # 13049 # 13954 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.549 1_23 - 62 Phage_terminase PF10668.4 60 0.00041 12.3 0.0 1 1 1.2e-05 0.00067 11.6 0.0 27 43 15 31 8 33 0.90 # 14952 # 15137 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_20 - 302 HTH_20 PF12840.2 61 5.2e-05 15.2 0.1 1 2 1.8e-05 0.001 11.1 0.0 26 55 37 66 5 72 0.81 # 13049 # 13954 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.549 1_20 - 302 HTH_20 PF12840.2 61 5.2e-05 15.2 0.1 2 2 0.029 1.7 0.8 0.1 12 42 243 272 239 273 0.85 # 13049 # 13954 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.549 1_47 - 110 DNA_RNApol_7kD PF03604.8 32 0.0001 13.9 2.7 1 1 3.4e-06 0.00019 13.0 2.7 9 25 68 84 63 86 0.80 # 34880 # 35209 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_30 - 158 Methyltransf_11 PF08241.7 95 2.7e-08 26.4 0.0 1 2 1.7e-05 0.00096 11.8 0.0 1 66 7 68 7 72 0.75 # 19248 # 19721 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_30 - 158 Methyltransf_11 PF08241.7 95 2.7e-08 26.4 0.0 2 2 8.7e-06 0.00051 12.7 0.0 74 95 96 117 88 117 0.89 # 19248 # 19721 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.536 1_47 - 110 UPF0547 PF10571.4 26 8e-06 17.7 4.5 1 1 2.1e-07 1.2e-05 17.1 4.5 1 21 63 83 63 85 0.97 # 34880 # 35209 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b4a51d07-35dd-4788-8872-5fd613ebbbcf # Target file: checkm_output/bins/pm1557/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1557/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b4a51d07-35dd-4788-8872-5fd613ebbbcf checkm_output/bins/pm1557/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:46:10 2017 # [ok]