# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 194 HTH_IclR PF09339.5 52 9.6e-05 13.5 0.1 1 2 0.012 0.44 1.8 0.1 6 18 108 120 107 137 0.81 # 1454 # 2035 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_4 - 194 HTH_IclR PF09339.5 52 9.6e-05 13.5 0.1 2 2 5.8e-05 0.0021 9.2 0.0 16 38 156 178 140 185 0.88 # 1454 # 2035 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_6 - 281 ABC_tran PF00005.22 137 5.5e-22 70.1 0.1 1 2 1.7e-21 6.3e-20 63.4 0.1 44 137 3 108 1 108 0.87 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 281 ABC_tran PF00005.22 137 5.5e-22 70.1 0.1 2 2 0.002 0.073 4.9 0.0 36 93 158 268 145 279 0.68 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_16 - 322 ThiF PF00899.16 136 7.7e-41 130.6 0.0 1 1 3.9e-42 1.5e-40 129.7 0.0 2 132 23 153 22 155 0.98 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_2 - 222 rve_3 PF13683.1 67 8.3e-19 58.5 0.0 1 1 3.5e-20 1.3e-18 57.9 0.0 4 67 148 212 145 212 0.96 # 551 # 1216 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.544 1_12 - 195 HTH_38 PF13936.1 44 1e-05 16.6 0.0 1 1 9.4e-07 3.5e-05 14.9 0.0 4 39 151 186 148 187 0.89 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_16 - 322 2-Hacid_dh_C PF02826.14 178 0.00022 11.9 0.0 1 1 1.3e-05 0.00049 10.8 0.0 28 73 15 61 1 77 0.74 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_25 - 286 MarR PF01047.17 59 0.0002 12.6 0.1 1 1 9.3e-06 0.00034 11.9 0.1 3 43 3 41 1 42 0.87 # 22965 # 23822 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_15 - 254 NanE PF04131.9 192 3.3e-05 14.4 0.0 1 1 2.1e-06 7.7e-05 13.2 0.0 143 190 172 222 165 224 0.83 # 15150 # 15911 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.587 2_3 - 173 CbiA PF01656.18 195 1.4e-14 45.4 0.3 1 1 6.2e-16 2.3e-14 44.7 0.3 33 172 2 119 1 139 0.69 # 1435 # 1953 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 3_1 - 326 Rep_3 PF01051.16 222 4.2e-56 181.5 0.0 1 1 1.5e-57 5.4e-56 181.1 0.0 1 222 6 237 6 237 0.91 # 3 # 980 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.496 1_2 - 222 rve PF00665.21 120 7.5e-32 101.5 0.0 1 1 3.3e-33 1.2e-31 100.8 0.0 3 119 59 173 57 174 0.96 # 551 # 1216 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.544 1_11 - 237 Methyltransf_26 PF13659.1 117 4.8e-08 24.6 0.0 1 1 2e-09 7.4e-08 24.0 0.0 5 76 54 121 51 215 0.89 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_15 - 254 His_biosynth PF00977.16 229 1.5e-05 15.8 0.0 1 2 0.0055 0.2 2.3 0.0 153 188 25 60 10 71 0.73 # 15150 # 15911 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.587 1_15 - 254 His_biosynth PF00977.16 229 1.5e-05 15.8 0.0 2 2 8.8e-06 0.00032 11.5 0.0 73 113 173 213 154 241 0.83 # 15150 # 15911 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.587 1_6 - 281 SMC_N PF02463.14 220 7.1e-08 23.4 0.1 1 1 2.6e-09 9.6e-08 23.0 0.1 80 211 24 152 5 160 0.72 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_1 - 100 HTH_Tnp_1 PF01527.15 76 5e-09 27.6 3.6 1 1 3.3e-10 6e-09 27.3 3.6 3 76 11 79 9 91 0.88 # 65 # 364 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_12 - 195 HTH_Tnp_1 PF01527.15 76 0.0002 12.8 0.0 1 1 2.2e-05 0.00042 11.8 0.0 9 40 154 184 148 190 0.89 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 2_3 - 173 MipZ PF09140.6 261 2.4e-05 15.0 0.0 1 1 8.1e-07 3e-05 14.6 0.0 90 141 33 84 9 122 0.81 # 1435 # 1953 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_11 - 237 Methyltransf_25 PF13649.1 101 1.4e-07 23.4 0.0 1 1 6.2e-09 2.3e-07 22.7 0.0 2 82 54 129 53 150 0.76 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_6 - 281 AAA_21 PF13304.1 303 1.8e-06 19.5 0.0 1 1 6.4e-08 2.4e-06 19.2 0.0 233 297 76 138 18 144 0.78 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 195 Sigma70_r4 PF04545.11 50 0.00011 13.1 0.0 1 1 7.2e-06 0.00026 11.8 0.0 4 37 151 184 150 190 0.96 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_2 - 222 rve_2 PF13333.1 52 1.6e-23 74.2 0.2 1 2 0.0019 0.071 4.8 0.0 41 52 34 45 22 45 0.76 # 551 # 1216 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.544 1_2 - 222 rve_2 PF13333.1 52 1.6e-23 74.2 0.2 2 2 6.1e-23 2.2e-21 67.2 0.1 1 52 164 220 164 220 0.98 # 551 # 1216 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.544 1_11 - 237 NodS PF05401.6 201 2.8e-06 18.3 0.0 1 1 1e-07 3.7e-06 17.9 0.0 16 146 20 160 15 170 0.76 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_25 - 286 HTH_1 PF00126.22 60 4.7e-22 69.1 0.4 1 1 2.5e-23 9.4e-22 68.1 0.4 1 60 3 62 3 62 0.96 # 22965 # 23822 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 2_4 - 112 LZ_Tnp_IS481 PF13011.1 85 2.2e-05 16.3 0.0 1 1 7.7e-07 2.9e-05 15.9 0.0 25 80 22 77 9 80 0.88 # 2399 # 2734 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_1 - 100 HTH_Tnp_IS630 PF01710.11 120 7.7e-05 13.9 0.2 1 1 2.6e-06 9.5e-05 13.6 0.2 6 73 18 84 8 98 0.83 # 65 # 364 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_21 - 138 HTH_3 PF01381.17 55 4.2e-09 27.7 0.0 1 1 1.9e-10 7e-09 27.0 0.0 1 54 83 134 83 135 0.92 # 18658 # 19071 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_4 - 194 HTH_23 PF13384.1 50 2.5e-07 21.8 0.0 1 1 8.7e-08 8.1e-07 20.2 0.0 8 46 149 189 149 192 0.86 # 1454 # 2035 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_12 - 195 HTH_23 PF13384.1 50 6.9e-07 20.4 0.1 1 1 1.6e-07 1.5e-06 19.4 0.1 5 39 155 189 151 191 0.90 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 2_4 - 112 HTH_23 PF13384.1 50 4.9e-05 14.5 0.0 1 1 8e-06 7.4e-05 13.9 0.0 13 49 18 54 8 55 0.84 # 2399 # 2734 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_1 - 100 HTH_23 PF13384.1 50 8.6e-05 13.7 0.0 1 1 1.9e-05 0.00018 12.7 0.0 6 41 19 53 14 61 0.85 # 65 # 364 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_12 - 195 HTH_7 PF02796.10 45 7.6e-15 46.1 0.0 1 1 8.9e-16 1.7e-14 45.0 0.0 1 44 147 190 147 191 0.96 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 2_4 - 112 HTH_7 PF02796.10 45 0.00018 12.9 0.0 1 1 1.5e-05 0.00027 12.3 0.0 19 41 19 42 15 45 0.87 # 2399 # 2734 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_21 - 138 HTH_19 PF12844.2 64 4.4e-08 24.7 0.0 1 1 2e-09 7.5e-08 23.9 0.0 4 56 83 133 81 137 0.90 # 18658 # 19071 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_16 - 322 Saccharop_dh PF03435.13 386 2.1e-06 18.3 0.1 1 2 4.1e-07 1.5e-05 15.5 0.1 1 116 26 182 26 199 0.71 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_16 - 322 Saccharop_dh PF03435.13 386 2.1e-06 18.3 0.1 2 2 0.036 1.3 -0.7 0.0 269 306 260 297 237 305 0.75 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 2_4 - 112 HTH_29 PF13551.1 112 3.4e-18 57.4 0.0 1 1 3.4e-19 4.2e-18 57.1 0.0 2 70 12 80 11 85 0.96 # 2399 # 2734 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_4 - 194 HTH_29 PF13551.1 112 5.8e-06 18.0 0.0 1 1 3.2e-06 3.9e-05 15.3 0.0 2 40 149 186 148 191 0.92 # 1454 # 2035 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_12 - 195 HTH_29 PF13551.1 112 6.8e-06 17.8 0.6 1 2 0.0013 0.016 6.9 0.1 38 70 133 164 125 166 0.82 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_12 - 195 HTH_29 PF13551.1 112 6.8e-06 17.8 0.6 2 2 4.6e-05 0.00056 11.6 0.1 4 34 160 189 159 193 0.91 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_11 - 237 Methyltransf_31 PF13847.1 152 3.8e-11 34.3 0.0 1 1 1.4e-12 5.3e-11 33.8 0.0 5 106 51 152 47 190 0.90 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 2_3 - 173 TIGR01968 TIGR01968 261 2.4e-07 21.5 0.2 1 1 7e-09 2.6e-07 21.4 0.2 102 187 32 116 17 165 0.79 # 1435 # 1953 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_11 - 237 Methyltransf_12 PF08242.7 99 1.9e-14 45.5 0.2 1 2 3.6e-15 1.3e-13 42.8 0.0 1 99 54 152 54 152 0.94 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_11 - 237 Methyltransf_12 PF08242.7 99 1.9e-14 45.5 0.2 2 2 0.05 1.8 0.6 0.0 46 71 178 203 155 214 0.77 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 2_4 - 112 HTH_28 PF13518.1 52 3e-09 28.3 0.0 1 1 4.8e-10 4.5e-09 27.8 0.0 11 51 20 61 14 62 0.89 # 2399 # 2734 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_12 - 195 HTH_28 PF13518.1 52 5.3e-07 21.1 0.1 1 1 1.2e-07 1.1e-06 20.1 0.1 1 34 156 189 156 192 0.89 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_4 - 194 HTH_28 PF13518.1 52 8.8e-06 17.2 0.0 1 1 2.5e-06 2.3e-05 15.9 0.0 5 36 151 182 149 185 0.91 # 1454 # 2035 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 1_1 - 100 HTH_28 PF13518.1 52 0.00012 13.6 0.1 1 1 3e-05 0.00028 12.5 0.1 14 37 31 54 22 57 0.85 # 65 # 364 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.523 1_15 - 254 ThiG PF05690.9 247 1.3e-105 343.4 0.0 1 1 3.9e-107 1.4e-105 343.2 0.0 3 247 4 245 2 245 0.98 # 15150 # 15911 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.587 1_16 - 322 Shikimate_DH PF01488.15 135 5e-05 14.9 0.2 1 1 2.5e-06 9.3e-05 14.1 0.2 8 36 19 47 12 53 0.87 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_25 - 286 HTH_24 PF13412.1 48 0.0001 13.2 0.1 1 1 8.8e-06 0.00033 11.6 0.0 1 44 1 42 1 42 0.95 # 22965 # 23822 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_25 - 286 HTH_30 PF13556.1 59 1.6e-06 19.2 0.1 1 1 9e-08 3.3e-06 18.2 0.1 9 51 12 53 6 58 0.85 # 22965 # 23822 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_11 - 237 TIGR03533 TIGR03533 284 0.0001 12.9 0.0 1 1 4.7e-06 0.00018 12.1 0.0 114 191 42 117 36 121 0.77 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_11 - 237 TIGR03534 TIGR03534 253 5.5e-06 17.1 0.0 1 1 2.3e-07 8.7e-06 16.5 0.0 81 159 42 118 34 120 0.81 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_15 - 254 PcrB PF01884.12 231 1.4e-05 15.9 0.0 1 2 0.0018 0.068 3.8 0.0 138 164 73 97 62 114 0.77 # 15150 # 15911 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.587 1_15 - 254 PcrB PF01884.12 231 1.4e-05 15.9 0.0 2 2 2.3e-05 0.00085 10.1 0.0 167 227 159 218 144 222 0.80 # 15150 # 15911 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.587 1_6 - 281 TIGR02211 TIGR02211 221 5.2e-36 115.4 0.2 1 1 1.9e-37 7.1e-36 114.9 0.2 63 220 2 159 1 160 0.93 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 2_3 - 173 VirC1 PF07015.6 231 3.3e-06 17.8 0.1 1 1 1.1e-07 4e-06 17.5 0.1 80 182 38 138 10 163 0.77 # 1435 # 1953 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_12 - 195 CENP-B_N PF04218.8 53 4.3e-06 17.7 0.0 1 1 3.7e-07 1.4e-05 16.1 0.0 11 42 156 187 150 190 0.89 # 12722 # 13306 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_14 - 66 ThiS PF02597.15 77 1.8e-12 39.1 0.0 1 1 5.6e-14 2.1e-12 38.9 0.0 18 77 11 65 3 65 0.89 # 14952 # 15149 # 1 # ID=1_14;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_6 - 281 SbcCD_C PF13558.1 90 4.9e-05 14.8 0.4 1 1 8.5e-06 0.00031 12.2 0.4 61 88 95 122 74 124 0.78 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_11 - 237 MTS PF05175.9 170 8.2e-13 39.6 0.3 1 1 4.1e-14 1.5e-12 38.7 0.1 21 136 39 152 36 159 0.89 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_11 - 237 Methyltransf_23 PF13489.1 161 2e-10 32.1 0.1 1 1 7.1e-12 2.6e-10 31.7 0.1 16 149 44 193 29 202 0.81 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_2 - 222 DDE_Tnp_IS240 PF13610.1 140 7.4e-12 36.9 0.0 1 1 2.6e-13 9.6e-12 36.6 0.0 2 129 63 193 62 205 0.85 # 551 # 1216 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.544 1_16 - 322 Ldh_1_N PF00056.18 141 0.0004 11.7 0.1 1 1 2.2e-05 0.00083 10.7 0.0 2 35 25 56 24 108 0.85 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_25 - 286 MarR_2 PF12802.2 62 0.00012 13.3 0.0 1 1 6.4e-06 0.00024 12.3 0.0 3 47 1 41 1 49 0.94 # 22965 # 23822 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.596 1_13 - 311 DAO PF01266.19 358 4.7e-31 99.4 1.2 1 1 8.5e-31 3.1e-29 93.4 1.2 4 356 6 301 3 304 0.84 # 14023 # 14955 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.628 1_23 - 291 Seryl_tRNA_N PF02403.17 108 0.014 7.0 12.0 1 3 0.0015 0.056 5.0 0.4 40 106 19 86 6 88 0.58 # 20264 # 21136 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_23 - 291 Seryl_tRNA_N PF02403.17 108 0.014 7.0 12.0 2 3 0.026 0.97 1.0 0.0 44 90 170 220 162 235 0.49 # 20264 # 21136 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_23 - 291 Seryl_tRNA_N PF02403.17 108 0.014 7.0 12.0 3 3 0.00019 0.0069 8.0 1.8 21 93 203 279 186 285 0.80 # 20264 # 21136 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.560 1_6 - 281 AAA_10 PF12846.2 304 3.7e-06 18.0 0.0 1 1 1.3e-07 5e-06 17.6 0.0 214 263 75 140 5 146 0.72 # 5345 # 6187 # 1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.530 1_11 - 237 Methyltransf_18 PF12847.2 112 5.2e-10 31.5 0.0 1 1 3.1e-11 1.2e-09 30.3 0.0 4 107 52 152 50 156 0.83 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_11 - 237 Methyltransf_11 PF08241.7 95 8.9e-13 40.2 0.0 1 1 4.9e-14 1.8e-12 39.2 0.0 1 93 54 152 54 153 0.92 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_11 - 237 Methyltransf_9 PF08003.6 315 0.00026 11.2 0.0 1 1 8.4e-06 0.00031 10.9 0.0 95 133 30 67 11 164 0.74 # 11685 # 12395 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.397 1_16 - 322 Semialdhyde_dh PF01118.19 121 0.00035 12.4 0.3 1 2 4.7e-05 0.0017 10.2 0.0 1 100 25 124 25 142 0.84 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 1_16 - 322 Semialdhyde_dh PF01118.19 121 0.00035 12.4 0.3 2 2 0.099 3.7 -0.6 0.2 3 12 145 154 143 156 0.87 # 15927 # 16892 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.634 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/d1c386e8-7faa-4875-bbf1-ace5b59a4186 # Target file: checkm_output/bins/pm1556/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1556/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d1c386e8-7faa-4875-bbf1-ace5b59a4186 checkm_output/bins/pm1556/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:46:08 2017 # [ok]