# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_35 - 342 ABC_tran PF00005.22 137 7.6e-05 14.6 0.0 1 1 6.8e-06 0.00013 13.8 0.0 7 35 156 184 153 225 0.89 # 28814 # 29839 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_27 - 915 ABC_tran PF00005.22 137 0.00023 13.1 0.0 1 1 2.8e-05 0.00054 11.9 0.0 13 37 536 560 526 584 0.87 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_10 - 186 HTH_22 PF13309.1 64 7.4e-05 14.1 0.0 1 1 1.3e-05 0.00053 11.4 0.0 47 61 163 177 161 179 0.91 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_10 - 186 TetR_N PF00440.18 47 9e-05 13.7 0.0 1 2 0.083 3.2 -0.9 0.0 13 21 4 12 3 12 0.91 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_10 - 186 TetR_N PF00440.18 47 9e-05 13.7 0.0 2 2 1.5e-05 0.0006 11.1 0.0 20 37 162 179 149 182 0.91 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_6 - 216 CbiA PF01656.18 195 5.2e-16 50.2 0.0 1 1 8.6e-17 3.4e-15 47.5 0.0 1 189 5 173 5 185 0.73 # 4430 # 5077 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.528 1_27 - 915 AAA_23 PF13476.1 202 1.4e-05 17.0 0.1 1 2 0.034 1.3 0.8 0.0 143 175 209 260 147 287 0.64 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_27 - 915 AAA_23 PF13476.1 202 1.4e-05 17.0 0.1 2 2 4e-06 0.00016 13.6 0.0 18 40 533 555 521 629 0.88 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 416 Methyltransf_26 PF13659.1 117 4e-06 18.5 0.0 1 1 1.9e-07 7.4e-06 17.6 0.0 5 91 19 107 15 164 0.76 # 6436 # 7683 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_27 - 915 SMC_N PF02463.14 220 0.00044 11.1 0.0 1 1 2.5e-05 0.00099 9.9 0.0 15 41 525 551 517 559 0.81 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_10 - 186 HTH_Tnp_1 PF01527.15 76 4.2e-05 15.1 0.0 1 1 2.9e-06 0.00011 13.7 0.0 13 44 148 179 143 183 0.85 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_1 - 579 TraG-D_C PF12696.2 128 4.8e-10 31.0 0.0 1 1 2.1e-11 8.1e-10 30.3 0.0 2 99 399 498 398 525 0.74 # 711 # 2447 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 216 MipZ PF09140.6 261 2e-07 21.9 0.2 1 2 4.3e-08 1.7e-06 18.8 0.0 2 51 4 53 3 78 0.90 # 4430 # 5077 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.528 1_6 - 216 MipZ PF09140.6 261 2e-07 21.9 0.2 2 2 0.01 0.4 1.2 0.1 93 135 75 118 62 135 0.77 # 4430 # 5077 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.528 1_27 - 915 AAA_21 PF13304.1 303 2.8e-05 15.7 0.1 1 2 7.5e-06 0.00029 12.4 0.0 2 48 537 568 536 650 0.66 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_27 - 915 AAA_21 PF13304.1 303 2.8e-05 15.7 0.1 2 2 0.031 1.2 0.5 0.1 30 89 685 745 669 787 0.73 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_21 - 119 HTH_25 PF13413.1 62 2e-05 15.8 0.3 1 1 2.6e-06 0.0001 13.5 0.2 1 19 5 23 5 29 0.90 # 18303 # 18659 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.462 1_27 - 915 AAA_16 PF13191.1 185 0.00014 13.4 0.0 1 1 1.9e-05 0.00073 11.1 0.0 18 52 528 563 518 582 0.79 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_27 - 915 AAA_22 PF13401.1 131 2.5e-05 16.0 0.0 1 2 6.8e-06 0.00027 12.7 0.0 6 37 536 573 531 598 0.75 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_27 - 915 AAA_22 PF13401.1 131 2.5e-05 16.0 0.0 2 2 0.051 2 0.2 0.0 78 125 742 791 737 797 0.76 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_21 - 119 HTH_3 PF01381.17 55 1.8e-15 48.2 0.0 1 1 1.1e-16 4.2e-15 47.0 0.0 1 55 6 64 6 64 0.97 # 18303 # 18659 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.462 1_10 - 186 HTH_23 PF13384.1 50 9.6e-09 26.4 0.0 1 1 1.5e-09 5.9e-08 23.9 0.0 10 38 151 179 147 181 0.92 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_10 - 186 HTH_7 PF02796.10 45 1e-10 33.0 0.0 1 1 1.1e-11 4.3e-10 31.0 0.0 1 44 138 181 138 182 0.95 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_21 - 119 HTH_19 PF12844.2 64 6.9e-16 49.7 0.0 1 1 3e-17 1.2e-15 49.0 0.0 2 59 4 65 3 69 0.91 # 18303 # 18659 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.462 1_10 - 186 HTH_29 PF13551.1 112 1.5e-05 16.8 0.0 1 1 1.5e-06 5.8e-05 14.8 0.0 6 33 153 179 149 183 0.93 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_28 - 235 ABC_tran_2 PF12848.2 85 0.0041 8.6 12.4 1 2 0.0013 0.051 5.1 1.1 23 72 41 90 33 97 0.77 # 23645 # 24349 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_28 - 235 ABC_tran_2 PF12848.2 85 0.0041 8.6 12.4 2 2 0.0022 0.085 4.4 4.3 13 68 127 182 125 232 0.86 # 23645 # 24349 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.496 1_1 - 579 TrwB_AAD_bind PF10412.4 386 7.5e-13 39.3 0.0 1 2 8.2e-06 0.00032 10.9 0.0 11 52 185 226 180 234 0.88 # 711 # 2447 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_1 - 579 TrwB_AAD_bind PF10412.4 386 7.5e-13 39.3 0.0 2 2 1.9e-10 7.5e-09 26.1 0.0 222 378 378 536 332 542 0.71 # 711 # 2447 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 216 TIGR01968 TIGR01968 261 2.7e-05 14.8 0.6 1 2 1.7e-06 6.5e-05 13.6 0.1 2 40 3 41 2 46 0.94 # 4430 # 5077 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.528 1_6 - 216 TIGR01968 TIGR01968 261 2.7e-05 14.8 0.6 2 2 0.056 2.2 -1.3 0.0 111 141 81 111 70 145 0.58 # 4430 # 5077 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.528 1_8 - 416 Methyltransf_15 PF09445.5 164 9.7e-05 13.5 0.0 1 1 4.2e-06 0.00016 12.8 0.0 3 84 17 99 15 106 0.82 # 6436 # 7683 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_1 - 579 DUF87 PF01935.12 229 3.3e-06 18.6 0.0 1 1 1.8e-07 6.9e-06 17.5 0.0 6 62 173 227 168 407 0.88 # 711 # 2447 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_10 - 186 HTH_28 PF13518.1 52 1.9e-06 19.4 0.0 1 1 1.2e-07 4.6e-06 18.2 0.0 7 33 153 179 147 181 0.87 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_21 - 119 HTH_31 PF13560.1 64 2.5e-14 44.9 0.0 1 1 1.2e-15 4.7e-14 44.0 0.0 5 57 5 60 4 73 0.94 # 18303 # 18659 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.462 1_35 - 342 T2SE PF00437.15 272 4.3e-50 161.6 0.0 1 1 1.3e-51 5.1e-50 161.4 0.0 6 240 17 279 12 312 0.95 # 28814 # 29839 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_1 - 579 T4SS-DNA_transf PF02534.9 469 4.2e-13 40.2 0.1 1 3 0.0068 0.26 1.2 0.0 96 124 143 170 128 177 0.73 # 711 # 2447 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_1 - 579 T4SS-DNA_transf PF02534.9 469 4.2e-13 40.2 0.1 2 3 1.7e-05 0.00065 9.8 0.0 43 84 186 231 167 238 0.84 # 711 # 2447 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_1 - 579 T4SS-DNA_transf PF02534.9 469 4.2e-13 40.2 0.1 3 3 3.3e-10 1.3e-08 25.3 0.0 242 436 338 535 333 559 0.80 # 711 # 2447 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_8 - 416 DNA_methylase PF00145.12 335 1e-70 230.0 0.0 1 1 3.2e-72 1.2e-70 229.7 0.0 2 334 17 399 16 400 0.81 # 6436 # 7683 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_10 - 186 HTH_17 PF12728.2 51 8.8e-05 14.4 0.0 1 1 6.1e-06 0.00024 13.0 0.0 5 22 162 179 160 182 0.94 # 8498 # 9055 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_22 - 150 TIGR00922 TIGR00922 172 4.3e-07 21.2 0.0 1 1 1.6e-08 6.2e-07 20.7 0.0 26 101 20 97 4 112 0.78 # 18907 # 19356 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.471 1_27 - 915 AAA_10 PF12846.2 304 1e-34 111.9 0.0 1 1 1.1e-35 2.2e-34 110.8 0.0 2 292 535 822 534 829 0.87 # 20885 # 23629 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_1 - 579 AAA_10 PF12846.2 304 9.6e-10 29.9 0.0 1 1 1.6e-09 3.2e-08 24.9 0.0 6 297 194 477 189 481 0.71 # 711 # 2447 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_6 - 216 ArsA_ATPase PF02374.10 305 1.2e-06 19.3 0.2 1 2 1.4e-06 5.4e-05 13.9 0.1 5 35 7 37 3 41 0.86 # 4430 # 5077 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.528 1_6 - 216 ArsA_ATPase PF02374.10 305 1.2e-06 19.3 0.2 2 2 0.0019 0.072 3.6 0.0 117 152 72 106 63 161 0.65 # 4430 # 5077 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.528 1_6 - 216 AAA_31 PF13614.1 157 0.00016 13.2 0.0 1 1 1.2e-05 0.00045 11.7 0.0 2 79 4 91 3 117 0.76 # 4430 # 5077 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.528 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/d09d77e4-8561-4065-a4a0-65cc167105aa # Target file: checkm_output/bins/pm1547/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1547/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d09d77e4-8561-4065-a4a0-65cc167105aa checkm_output/bins/pm1547/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:45:57 2017 # [ok]