# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_58 - 185 HTH_AsnC-type PF13404.1 42 0.00039 12.5 0.1 1 1 1.2e-05 0.00088 11.4 0.1 18 35 4 21 2 22 0.86 # 32196 # 32750 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_54 - 204 PB1 PF00564.19 84 0.00015 14.0 0.0 1 1 3.3e-06 0.00025 13.2 0.0 39 60 153 174 126 181 0.88 # 28194 # 28805 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_17 - 215 CbiA PF01656.18 195 1.8e-15 49.3 0.4 1 1 6.1e-17 4.6e-15 48.0 0.4 1 169 5 156 5 180 0.67 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_34 - 174 zf-ribbon_3 PF13248.1 26 0.00031 12.5 0.1 1 1 1.5e-05 0.00058 11.6 0.1 2 20 148 168 147 169 0.89 # 18214 # 18735 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_32 - 269 zf-ribbon_3 PF13248.1 26 0.054 5.4 10.0 1 2 0.00093 0.035 6.0 5.1 4 24 13 57 11 58 0.87 # 17269 # 18075 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 269 zf-ribbon_3 PF13248.1 26 0.054 5.4 10.0 2 2 0.00016 0.0058 8.4 0.3 2 11 49 58 48 64 0.76 # 17269 # 18075 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_35 - 169 Methyltransf_26 PF13659.1 117 3.9e-08 25.9 0.0 1 2 0.021 1.6 1.4 0.0 2 11 11 20 10 25 0.86 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_35 - 169 Methyltransf_26 PF13659.1 117 3.9e-08 25.9 0.0 2 2 5.4e-09 4e-07 22.6 0.0 57 116 58 127 29 128 0.84 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 215 MipZ PF09140.6 261 2.4e-08 25.8 0.2 1 1 1.3e-09 9.5e-08 23.9 0.2 3 63 5 65 3 131 0.72 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_35 - 169 Methyltransf_25 PF13649.1 101 2.5e-15 49.2 0.0 1 1 4.3e-17 3.2e-15 48.9 0.0 1 101 13 120 13 120 0.96 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 215 Phage_CI_repr PF07022.8 66 0.00024 13.7 0.4 1 2 0.017 1.3 1.8 0.1 23 44 13 33 9 37 0.68 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 Phage_CI_repr PF07022.8 66 0.00024 13.7 0.4 2 2 6.3e-05 0.0047 9.6 0.1 18 36 35 52 27 57 0.88 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_19 - 212 HTH_25 PF13413.1 62 0.00013 14.1 0.0 1 1 2.9e-06 0.00022 13.4 0.0 1 33 15 47 15 70 0.93 # 11838 # 12473 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.475 1_19 - 212 HTH_3 PF01381.17 55 1.7e-12 39.6 0.1 1 1 1.3e-13 3.3e-12 38.7 0.1 1 55 16 70 16 70 0.97 # 11838 # 12473 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.475 1_12 - 122 HTH_3 PF01381.17 55 6.8e-08 24.8 0.0 1 1 3.9e-09 9.7e-08 24.3 0.0 2 53 66 116 65 118 0.93 # 8977 # 9342 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_58 - 185 HTH_3 PF01381.17 55 0.00033 13.0 0.0 1 1 3.2e-05 0.00079 11.8 0.0 11 36 5 30 2 30 0.90 # 32196 # 32750 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_17 - 215 HTH_7 PF02796.10 45 0.00049 12.5 0.0 1 1 0.00016 0.012 8.1 0.0 10 31 121 142 116 144 0.87 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_19 - 212 HTH_19 PF12844.2 64 9.1e-11 34.3 0.0 1 1 4.3e-12 1.6e-10 33.4 0.0 3 58 15 70 13 75 0.94 # 11838 # 12473 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.475 1_12 - 122 HTH_19 PF12844.2 64 2.6e-08 26.4 0.0 1 1 9.2e-10 3.5e-08 26.0 0.0 2 59 63 119 62 121 0.95 # 8977 # 9342 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_34 - 174 OrfB_Zn_ribbon PF07282.6 69 0.0022 10.2 2.4 1 2 0.0015 0.11 4.7 0.0 55 68 43 56 38 57 0.86 # 18214 # 18735 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 174 OrfB_Zn_ribbon PF07282.6 69 0.0022 10.2 2.4 2 2 0.0014 0.1 4.8 0.8 30 51 150 169 148 173 0.82 # 18214 # 18735 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_55 - 460 Methyltransf_31 PF13847.1 152 8e-06 18.0 0.0 1 2 0.02 1.5 0.9 0.0 3 22 238 257 236 269 0.82 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_55 - 460 Methyltransf_31 PF13847.1 152 8e-06 18.0 0.0 2 2 1.1e-06 8e-05 14.8 0.0 71 124 295 351 270 400 0.80 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_17 - 215 TIGR01968 TIGR01968 261 1.2e-07 23.4 1.1 1 2 7.2e-09 5.4e-07 21.3 0.8 5 105 6 107 3 113 0.80 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 TIGR01968 TIGR01968 261 1.2e-07 23.4 1.1 2 2 0.0033 0.25 2.8 0.1 110 150 80 117 63 138 0.76 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 HTH_psq PF05225.11 45 0.00048 12.2 0.4 1 1 1.7e-05 0.0013 10.8 0.2 17 41 3 27 2 30 0.86 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_55 - 460 Methyltransf_12 PF08242.7 99 4e-05 16.6 0.0 1 1 1.7e-06 0.00012 15.0 0.0 54 98 282 334 260 335 0.70 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_59 - 617 Terminase_GpA PF05876.7 557 6.4e-179 588.3 0.0 1 1 1e-180 7.8e-179 588.0 0.0 4 552 34 585 31 590 0.96 # 32753 # 34603 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.508 1_19 - 212 HTH_31 PF13560.1 64 7.1e-08 25.1 0.1 1 1 3.5e-09 1.3e-07 24.3 0.1 2 59 12 68 11 82 0.93 # 11838 # 12473 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.475 1_58 - 185 HTH_31 PF13560.1 64 0.00038 13.2 0.1 1 1 2.2e-05 0.00082 12.1 0.1 14 43 3 32 2 54 0.82 # 32196 # 32750 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_34 - 174 ASCH PF04266.9 105 8.8e-12 37.9 0.0 1 1 1.8e-13 1.4e-11 37.3 0.0 1 58 5 87 5 94 0.94 # 18214 # 18735 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 215 AAA_25 PF13481.1 194 5e-05 15.2 0.2 1 1 1.8e-06 0.00013 13.9 0.2 35 156 5 95 2 110 0.77 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_16 - 82 Ribosomal_S8 PF00410.14 129 0.00047 12.5 0.6 1 1 8.1e-06 0.00061 12.2 0.1 89 125 6 42 1 45 0.85 # 10280 # 10525 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.463 1_55 - 460 Methyltransf_23 PF13489.1 161 2.5e-20 65.3 0.0 1 1 5.5e-22 4.1e-20 64.6 0.0 14 160 230 402 216 403 0.78 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_46 - 354 Mor PF08765.6 108 0.00036 12.9 0.0 1 1 1.5e-05 0.0011 11.3 0.0 59 97 132 173 126 176 0.84 # 23600 # 24661 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_19 - 212 HTH_26 PF13443.1 63 0.00036 13.3 0.0 1 1 1.7e-05 0.00065 12.4 0.0 7 57 21 70 14 75 0.78 # 11838 # 12473 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.475 1_58 - 185 HTH_26 PF13443.1 63 0.00071 12.3 0.0 1 1 3.9e-05 0.0015 11.3 0.0 11 32 4 25 2 33 0.88 # 32196 # 32750 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_58 - 185 HTH_17 PF12728.2 51 7.6e-05 15.5 0.0 1 1 4.4e-06 0.00033 13.4 0.0 4 31 6 32 4 37 0.86 # 32196 # 32750 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_32 - 269 Prim_Zn_Ribbon PF08273.7 40 0.033 6.8 7.2 1 2 0.00086 0.064 5.9 2.2 5 12 13 20 12 21 0.89 # 17269 # 18075 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_32 - 269 Prim_Zn_Ribbon PF08273.7 40 0.033 6.8 7.2 2 2 0.013 0.99 2.1 0.2 28 38 51 61 47 62 0.80 # 17269 # 18075 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_59 - 617 Zn_Tnp_IS1595 PF12760.2 46 0.00013 14.2 3.2 1 1 4.2e-06 0.00031 13.1 3.2 21 44 235 272 218 274 0.90 # 32753 # 34603 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.508 1_55 - 460 Methyltransf_18 PF12847.2 112 3.7e-05 16.8 0.1 1 1 4.7e-06 0.00035 13.7 0.1 5 109 242 337 238 339 0.79 # 28802 # 30181 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_35 - 169 Methyltransf_11 PF08241.7 95 3.8e-06 19.9 0.1 1 2 0.00052 0.039 7.0 0.0 21 66 31 75 14 77 0.61 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_35 - 169 Methyltransf_11 PF08241.7 95 3.8e-06 19.9 0.1 2 2 3.2e-05 0.0024 10.9 0.0 74 95 103 124 98 124 0.87 # 18735 # 19241 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_17 - 215 ArsA_ATPase PF02374.10 305 4.1e-07 21.7 1.5 1 2 1e-07 7.6e-06 17.6 0.6 3 33 5 35 3 40 0.89 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 ArsA_ATPase PF02374.10 305 4.1e-07 21.7 1.5 2 2 0.0033 0.25 2.7 0.0 118 136 73 91 37 162 0.61 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 AAA_31 PF13614.1 157 0.00021 13.7 0.2 1 2 1.2e-05 0.00089 11.7 0.0 3 38 5 40 4 59 0.86 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_17 - 215 AAA_31 PF13614.1 157 0.00021 13.7 0.2 2 2 0.088 6.6 -0.9 0.0 116 149 79 112 73 119 0.80 # 10538 # 11182 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_73 - 815 HHH_8 PF14716.1 68 3.1e-05 16.7 0.7 1 2 9.8e-05 0.0073 9.1 0.0 26 61 22 60 20 64 0.86 # 43149 # 45593 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.501 1_73 - 815 HHH_8 PF14716.1 68 3.1e-05 16.7 0.7 2 2 0.0016 0.12 5.2 0.1 25 45 62 82 60 91 0.84 # 43149 # 45593 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.501 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/59b51b6a-db29-4237-af8c-e1bbbbe2e86b # Target file: checkm_output/bins/pm1545/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1545/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/59b51b6a-db29-4237-af8c-e1bbbbe2e86b checkm_output/bins/pm1545/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:45:56 2017 # [ok]