# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 344 ABC_tran PF00005.22 137 2.1e-05 16.8 0.0 1 1 6.9e-07 3.5e-05 16.1 0.0 5 46 160 201 157 281 0.85 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_33 - 250 BSP PF04450.7 205 3.1e-05 15.4 0.0 1 1 7.5e-07 3.8e-05 15.1 0.0 66 112 63 103 23 147 0.80 # 26674 # 27423 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_2 - 344 Sigma54_activat PF00158.21 168 0.0002 12.8 0.0 1 1 8.9e-06 0.00045 11.7 0.0 8 51 152 195 146 213 0.82 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 FtsK_SpoIIIE PF01580.13 205 1.4e-06 19.9 0.0 1 1 9.4e-08 2.4e-06 19.1 0.0 27 60 153 188 130 192 0.72 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_10 - 820 FtsK_SpoIIIE PF01580.13 205 1.6e-05 16.4 0.0 1 1 1.2e-06 3.2e-05 15.4 0.0 27 73 452 499 429 499 0.71 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_31 - 406 HTH_38 PF13936.1 44 0.00015 13.3 0.0 1 1 7.8e-06 0.0004 11.9 0.0 3 35 148 181 146 184 0.88 # 24687 # 25904 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_2 - 344 MobB PF03205.9 140 0.0002 13.0 0.0 1 1 7.8e-06 0.0004 12.1 0.0 3 27 169 193 167 204 0.85 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_9 - 211 TBPIP PF07106.8 169 4.7e-05 14.9 4.5 1 2 8.2e-06 0.00042 11.9 0.1 72 112 28 68 24 84 0.84 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_9 - 211 TBPIP PF07106.8 169 4.7e-05 14.9 4.5 2 2 0.0024 0.12 3.8 1.7 83 153 124 197 111 207 0.79 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_27 - 332 DUF3584 PF12128.3 1201 5.1e-07 19.3 53.9 1 1 1.2e-08 6e-07 19.0 53.9 284 526 82 324 27 329 0.70 # 21846 # 22841 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.628 1_47 - 128 HTH_8 PF02954.14 42 0.00015 13.3 0.0 1 1 8.8e-06 0.00045 11.8 0.0 10 34 14 37 7 37 0.83 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_36 - 217 TetR_N PF00440.18 47 1.6e-20 64.5 0.1 1 2 6.4e-21 3.3e-19 60.3 0.0 2 47 10 55 9 55 0.97 # 29079 # 29729 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.637 1_36 - 217 TetR_N PF00440.18 47 1.6e-20 64.5 0.1 2 2 0.012 0.61 1.8 0.1 1 16 170 185 170 187 0.91 # 29079 # 29729 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.637 1_30 - 251 CbiA PF01656.18 195 2.3e-38 123.5 0.0 1 1 5.6e-40 2.9e-38 123.2 0.0 1 184 4 201 4 214 0.78 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_14 - 657 zf-ribbon_3 PF13248.1 26 2.7e-05 15.4 2.8 1 2 8.7e-05 0.0044 8.3 0.3 4 11 561 568 558 573 0.77 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 zf-ribbon_3 PF13248.1 26 2.7e-05 15.4 2.8 2 2 0.00029 0.015 6.6 0.1 5 12 612 619 609 626 0.77 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_30 - 251 YhjQ PF06564.7 244 6.1e-07 20.9 0.0 1 2 1.3e-06 6.6e-05 14.3 0.0 1 41 1 41 1 47 0.94 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_30 - 251 YhjQ PF06564.7 244 6.1e-07 20.9 0.0 2 2 0.0012 0.063 4.5 0.0 101 149 95 141 69 229 0.86 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 AAA_23 PF13476.1 202 0.0019 10.5 7.8 1 2 0.051 1.3 1.2 1.4 131 175 116 160 88 169 0.53 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_23 PF13476.1 202 0.0019 10.5 7.8 2 2 3.2e-05 0.00082 11.7 3.4 9 39 154 186 147 189 0.72 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_9 - 211 AAA_23 PF13476.1 202 0.0024 10.1 4.3 1 2 0.00035 0.0089 8.3 1.1 170 202 30 62 26 62 0.89 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_9 - 211 AAA_23 PF13476.1 202 0.0024 10.1 4.3 2 2 0.013 0.33 3.1 0.1 137 177 120 166 83 200 0.64 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_33 - 250 Peptidase_MA_2 PF13485.1 128 0.00028 12.9 0.1 1 1 1.1e-05 0.00054 12.0 0.1 19 43 81 105 64 120 0.75 # 26674 # 27423 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_2 - 344 Zeta_toxin PF06414.7 201 0.00011 13.3 0.0 1 1 3.3e-06 0.00017 12.7 0.0 14 52 164 204 151 240 0.71 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_1 - 645 TraG-D_C PF12696.2 128 3.3e-29 93.4 0.0 1 1 1.1e-30 5.8e-29 92.5 0.0 2 125 395 511 394 514 0.89 # 3 # 1937 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 251 MipZ PF09140.6 261 1.9e-16 51.8 0.1 1 1 6.4e-18 3.3e-16 51.0 0.1 2 129 3 140 2 161 0.75 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_43 - 89 DDE_Tnp_1 PF01609.16 213 4.5e-09 28.1 2.2 1 1 1.1e-10 5.6e-09 27.7 2.2 136 213 15 82 1 82 0.76 # 34878 # 35144 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.476 1_9 - 211 DivIC PF04977.10 80 0.00016 13.2 4.4 1 3 7.3e-05 0.0037 8.8 0.0 12 41 33 62 19 67 0.70 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_9 - 211 DivIC PF04977.10 80 0.00016 13.2 4.4 2 3 0.0012 0.064 4.8 0.2 28 62 124 161 122 164 0.82 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_9 - 211 DivIC PF04977.10 80 0.00016 13.2 4.4 3 3 0.06 3.1 -0.6 0.2 29 44 169 184 160 204 0.57 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_43 - 89 DDE_Tnp_1_2 PF13586.1 88 9e-22 69.1 1.3 1 1 2e-23 1e-21 68.9 1.3 4 87 2 82 1 83 0.92 # 34878 # 35144 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.476 1_29 - 126 Trp_repressor PF01371.14 88 7.5e-05 14.6 1.5 1 1 3.2e-06 0.00016 13.5 1.4 35 80 42 88 22 91 0.87 # 23554 # 23931 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_45 - 175 Homeobox PF00046.24 57 6.9e-05 14.4 0.4 1 1 3.8e-06 0.0002 13.0 0.4 11 44 125 158 122 160 0.90 # 36524 # 37048 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_31 - 406 KorB PF08535.5 93 1.2e-27 87.9 0.0 1 1 4.7e-29 2.4e-27 87.0 0.0 1 92 164 254 164 255 0.96 # 24687 # 25904 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_24 - 104 HTH_37 PF13744.1 80 3.1e-05 15.8 0.0 1 1 1e-06 5.2e-05 15.0 0.0 25 61 17 52 16 63 0.86 # 18917 # 19228 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_14 - 657 zf-C4_Topoisom PF01396.14 39 3.1e-20 63.4 13.5 1 2 3e-14 1.5e-12 38.8 2.7 4 36 562 594 559 595 0.94 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 zf-C4_Topoisom PF01396.14 39 3.1e-20 63.4 13.5 2 2 2.1e-11 1.1e-09 29.7 3.2 4 31 612 644 609 649 0.84 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_35 - 400 TIGR01394 TIGR01394 594 0.00077 9.3 0.0 1 1 2.2e-05 0.0011 8.8 0.0 408 486 267 343 261 354 0.84 # 27774 # 28973 # -1 # ID=1_35;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.637 1_14 - 657 Ribosomal_L37ae PF01780.14 90 0.00026 12.8 0.2 1 2 0.00075 0.038 5.9 0.0 26 57 550 583 543 597 0.75 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 Ribosomal_L37ae PF01780.14 90 0.00026 12.8 0.2 2 2 0.0025 0.13 4.2 0.2 32 52 606 626 601 648 0.76 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_2 - 344 cobW PF02492.14 178 6e-05 14.5 0.0 1 1 2e-06 0.0001 13.8 0.0 3 35 169 201 167 208 0.87 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_16 PF13191.1 185 7.8e-06 17.9 0.0 1 1 5e-07 1.3e-05 17.2 0.0 8 80 151 223 150 290 0.78 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_10 - 820 AAA_16 PF13191.1 185 0.00026 13.0 0.0 1 1 2.5e-05 0.00065 11.7 0.0 9 40 450 481 443 497 0.76 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_2 - 344 AAA_22 PF13401.1 131 1.7e-05 17.0 0.0 1 1 6.4e-07 3.3e-05 16.0 0.0 3 37 165 213 161 309 0.76 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_29 PF13555.1 62 3.2e-05 15.4 0.0 1 1 2.5e-06 6.5e-05 14.4 0.0 17 43 161 186 153 195 0.77 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_10 - 820 AAA_29 PF13555.1 62 8.3e-05 14.1 0.1 1 1 6.8e-06 0.00017 13.1 0.1 23 38 466 480 453 496 0.78 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_49 - 510 DUF955 PF06114.8 122 0.00038 12.1 0.1 1 1 2.8e-05 0.0014 10.3 0.0 38 79 198 241 170 251 0.81 # 38980 # 40509 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_47 - 128 HTH_3 PF01381.17 55 1.6e-11 35.9 0.0 1 2 7.4e-05 0.0019 10.1 0.1 9 31 23 43 13 51 0.76 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_47 - 128 HTH_3 PF01381.17 55 1.6e-11 35.9 0.0 2 2 3.6e-09 9.1e-08 23.9 0.0 5 49 70 114 67 118 0.92 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_24 - 104 HTH_3 PF01381.17 55 1.8e-11 35.7 0.0 1 1 1.1e-12 2.8e-11 35.1 0.0 6 55 20 69 17 69 0.95 # 18917 # 19228 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_21 - 216 HTH_23 PF13384.1 50 8.4e-06 17.4 0.1 1 1 2.5e-06 3.2e-05 15.5 0.1 5 37 170 202 166 214 0.87 # 17124 # 17771 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.630 1_31 - 406 HTH_23 PF13384.1 50 2.7e-05 15.8 0.2 1 1 5.8e-06 7.4e-05 14.4 0.0 11 35 159 184 150 188 0.81 # 24687 # 25904 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_47 - 128 HTH_23 PF13384.1 50 0.00022 12.9 0.1 1 1 0.00045 0.0057 8.4 0.0 12 37 16 41 12 57 0.83 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_36 - 217 HTH_23 PF13384.1 50 0.00044 11.9 0.1 1 1 0.00019 0.0024 9.6 0.0 10 35 13 42 6 55 0.75 # 29079 # 29729 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.637 1_30 - 251 Fer4_NifH PF00142.13 273 2.2e-07 22.2 0.0 1 1 5.9e-09 3e-07 21.8 0.0 8 49 10 51 2 89 0.80 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_21 - 216 HTH_7 PF02796.10 45 1.5e-10 32.9 0.0 1 1 8.5e-12 4.4e-10 31.3 0.0 1 44 164 205 164 206 0.98 # 17124 # 17771 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.630 1_47 - 128 HTH_19 PF12844.2 64 1.8e-08 26.4 0.0 1 2 0.001 0.026 6.6 0.0 14 33 23 42 10 51 0.79 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_47 - 128 HTH_19 PF12844.2 64 1.8e-08 26.4 0.0 2 2 3.3e-07 8.5e-06 17.8 0.0 5 53 67 118 65 121 0.89 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_24 - 104 HTH_19 PF12844.2 64 4.6e-05 15.5 0.0 1 1 2.9e-06 7.3e-05 14.8 0.0 12 61 23 72 22 74 0.95 # 18917 # 19228 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_2 - 344 Mg_chelatase PF01078.16 207 6.8e-08 23.8 0.0 1 1 2.7e-09 1.4e-07 22.8 0.0 5 65 149 209 145 249 0.83 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_47 - 128 HTH_29 PF13551.1 112 0.00026 13.1 0.1 1 1 2.5e-05 0.00063 11.9 0.1 8 75 17 78 11 118 0.75 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_45 - 175 HTH_29 PF13551.1 112 0.0011 11.1 4.4 1 2 6.1e-05 0.0016 10.6 0.3 42 91 47 95 29 110 0.77 # 36524 # 37048 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_45 - 175 HTH_29 PF13551.1 112 0.0011 11.1 4.4 2 2 0.043 1.1 1.5 0.2 42 67 137 159 101 171 0.48 # 36524 # 37048 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_33 - 250 SprT-like PF10263.4 157 1.9e-33 107.3 0.0 1 1 5.1e-35 2.6e-33 106.8 0.0 1 150 23 226 23 243 0.92 # 26674 # 27423 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_1 - 645 TrwB_AAD_bind PF10412.4 386 4e-27 86.7 0.0 1 1 5e-28 8.6e-27 85.6 0.0 15 377 138 524 134 530 0.75 # 3 # 1937 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_10 - 820 TrwB_AAD_bind PF10412.4 386 3.4e-08 24.4 0.0 1 2 8.4e-06 0.00014 12.4 0.0 12 52 462 502 451 508 0.85 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_10 - 820 TrwB_AAD_bind PF10412.4 386 3.4e-08 24.4 0.0 2 2 6.5e-05 0.0011 9.5 0.0 243 340 658 757 645 773 0.83 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_2 - 344 TrwB_AAD_bind PF10412.4 386 2e-05 15.3 0.0 1 1 2.3e-06 3.8e-05 14.3 0.0 14 39 165 190 161 199 0.88 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 TIGR01968 TIGR01968 261 1.2e-12 39.3 0.0 1 2 1.3e-08 6.5e-07 20.5 0.0 2 39 2 39 1 43 0.96 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_30 - 251 TIGR01968 TIGR01968 261 1.2e-12 39.3 0.0 2 2 1.8e-07 9.1e-06 16.8 0.0 101 228 99 231 85 245 0.76 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_43 - 89 DDE_Tnp_4 PF13359.1 158 3.2e-05 15.5 0.1 1 1 7.1e-07 3.6e-05 15.4 0.1 96 156 16 79 1 80 0.76 # 34878 # 35144 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.476 1_2 - 344 AAA_18 PF13238.1 129 2.6e-06 19.7 0.0 1 1 1.1e-07 5.5e-06 18.7 0.0 1 42 169 214 169 259 0.90 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 DUF87 PF01935.12 229 0.00014 13.6 0.0 1 1 9e-06 0.00046 12.0 0.0 26 46 169 189 148 199 0.84 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_21 - 216 HTH_28 PF13518.1 52 7.8e-05 14.7 0.2 1 1 8.3e-06 0.00021 13.3 0.2 3 34 173 204 172 210 0.89 # 17124 # 17771 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.630 1_47 - 128 HTH_28 PF13518.1 52 0.00031 12.7 0.1 1 2 0.00018 0.0046 9.0 0.0 9 35 18 44 12 54 0.84 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_47 - 128 HTH_28 PF13518.1 52 0.00031 12.7 0.1 2 2 0.078 2 0.6 0.0 26 41 103 118 101 123 0.87 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_36 - 217 HTH_Tnp_1_2 PF13022.1 142 0.00048 11.9 0.0 1 1 1.4e-05 0.0007 11.4 0.0 23 77 16 64 2 70 0.77 # 29079 # 29729 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.637 1_47 - 128 DUF2089 PF09862.4 113 0.00011 14.0 0.0 1 1 4.2e-06 0.00021 13.0 0.0 49 69 21 41 11 61 0.85 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_9 - 211 MerR-DNA-bind PF09278.6 65 0.00037 12.9 1.8 1 3 0.0012 0.062 5.8 0.1 41 64 33 56 20 57 0.87 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_9 - 211 MerR-DNA-bind PF09278.6 65 0.00037 12.9 1.8 2 3 0.0028 0.14 4.6 0.0 25 61 109 145 105 148 0.90 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_9 - 211 MerR-DNA-bind PF09278.6 65 0.00037 12.9 1.8 3 3 0.089 4.5 -0.2 0.3 48 61 169 182 150 205 0.65 # 7393 # 8025 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_33 - 250 WLM PF08325.5 186 3.1e-05 15.8 0.0 1 1 9.5e-07 4.8e-05 15.2 0.0 77 97 82 102 74 146 0.88 # 26674 # 27423 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_24 - 104 HTH_24 PF13412.1 48 6e-05 14.4 0.0 1 1 2.1e-06 0.0001 13.6 0.0 17 38 23 44 20 45 0.88 # 18917 # 19228 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_2 - 344 Sigma54_activ_2 PF14532.1 138 9.9e-05 14.4 0.0 1 1 4e-06 0.0002 13.4 0.0 7 47 152 192 150 239 0.76 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_47 - 128 HTH_10 PF04967.7 53 2.9e-05 15.6 0.1 1 2 1.2e-05 0.00063 11.3 0.0 24 41 22 39 17 41 0.85 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_47 - 128 HTH_10 PF04967.7 53 2.9e-05 15.6 0.1 2 2 0.014 0.7 1.6 0.0 20 32 100 112 99 114 0.80 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_2 - 344 DEAD PF00270.24 169 8.4e-06 17.3 0.0 1 1 6.3e-07 3.2e-05 15.4 0.0 10 56 161 205 154 256 0.71 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_47 - 128 HTH_31 PF13560.1 64 6.8e-09 27.9 0.2 1 2 0.035 0.9 1.8 0.0 18 34 25 41 13 52 0.86 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_47 - 128 HTH_31 PF13560.1 64 6.8e-09 27.9 0.2 2 2 3.9e-09 1e-07 24.1 0.0 3 54 63 113 62 115 0.93 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_24 - 104 HTH_31 PF13560.1 64 2.7e-07 22.7 0.0 1 1 1.4e-08 3.5e-07 22.4 0.0 15 63 24 71 11 74 0.92 # 18917 # 19228 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_2 - 344 T2SE PF00437.15 272 2.4e-73 238.3 0.0 1 1 5.4e-75 2.7e-73 238.1 0.0 4 270 19 321 16 323 0.97 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 Methyltransf_24 PF13578.1 106 0.00015 14.5 0.0 1 1 9.5e-06 0.00048 12.9 0.0 7 81 13 121 11 138 0.63 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 NACHT PF05729.7 166 0.00023 12.8 0.0 1 1 8.8e-06 0.00045 11.9 0.0 3 23 169 189 167 196 0.87 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 UPF0079 PF02367.12 123 0.00012 13.6 0.0 1 1 4.5e-06 0.00023 12.8 0.0 14 41 165 192 151 200 0.76 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_17 PF13207.1 121 8.5e-05 15.4 0.0 1 1 4.3e-06 0.00022 14.0 0.0 2 21 169 188 168 257 0.78 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_45 - 175 Myb_DNA-bind_6 PF13921.1 60 0.0001 14.4 1.3 1 2 0.0019 0.097 4.9 0.0 2 23 63 88 63 98 0.80 # 36524 # 37048 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_45 - 175 Myb_DNA-bind_6 PF13921.1 60 0.0001 14.4 1.3 2 2 0.00018 0.0092 8.1 0.3 2 49 101 153 101 169 0.84 # 36524 # 37048 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.587 1_2 - 344 Viral_helicase1 PF01443.13 234 0.00036 12.0 0.0 1 1 1.4e-05 0.00071 11.1 0.0 1 21 169 189 169 215 0.85 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 Pox_A32 PF04665.7 241 0.00021 12.6 0.0 1 1 7.6e-06 0.00039 11.7 0.0 15 36 168 189 155 197 0.84 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_14 PF13173.1 128 0.00031 12.6 1.5 1 2 0.0023 0.12 4.3 0.6 31 97 114 174 105 174 0.63 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 AAA_14 PF13173.1 128 0.00031 12.6 1.5 2 2 2.9e-05 0.0015 10.4 0.0 2 40 166 205 165 235 0.74 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 VirC1 PF07015.6 231 1.6e-05 16.0 0.0 1 2 3e-06 0.00015 12.8 0.0 1 41 1 41 1 59 0.89 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_30 - 251 VirC1 PF07015.6 231 1.6e-05 16.0 0.0 2 2 0.017 0.86 0.5 0.0 81 121 107 147 88 167 0.67 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_2 - 344 AAA_33 PF13671.1 143 3.6e-05 15.6 0.0 1 1 1.2e-06 6.1e-05 14.9 0.0 2 27 169 195 169 271 0.71 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 ArgK PF03308.11 267 0.00016 12.4 0.0 1 1 4.8e-06 0.00025 11.8 0.0 38 71 11 44 2 47 0.90 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_1 - 645 T4SS-DNA_transf PF02534.9 469 5.9e-115 376.3 0.0 1 1 1.5e-116 7.8e-115 375.9 0.0 1 462 99 550 99 554 0.93 # 3 # 1937 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_14 - 657 Auto_anti-p27 PF06677.7 41 5.8e-05 14.8 1.6 1 2 7.4e-05 0.0038 9.0 0.2 19 34 561 576 559 579 0.85 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 Auto_anti-p27 PF06677.7 41 5.8e-05 14.8 1.6 2 2 0.0024 0.12 4.2 0.1 17 29 609 621 606 627 0.81 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 DUF1610 PF07754.6 24 0.016 7.4 14.5 1 2 7.2e-05 0.0037 9.4 2.3 16 24 559 567 557 567 0.89 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 DUF1610 PF07754.6 24 0.016 7.4 14.5 2 2 0.0087 0.44 2.8 4.7 18 24 611 617 611 617 0.91 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_29 - 126 Mor PF08765.6 108 0.00012 13.8 0.3 1 1 4.3e-06 0.00022 13.0 0.1 52 106 39 91 32 92 0.80 # 23554 # 23931 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_2 - 344 ATP_bind_1 PF03029.12 238 8.5e-05 14.1 0.0 1 1 6.8e-06 0.00017 13.1 0.0 1 33 171 203 171 210 0.92 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_30 - 251 ATP_bind_1 PF03029.12 238 0.00011 13.7 0.1 1 1 1.3e-05 0.00032 12.2 0.1 6 99 12 118 10 121 0.63 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_24 - 104 HTH_26 PF13443.1 63 2e-07 23.2 0.0 1 1 1.1e-08 2.7e-07 22.7 0.0 4 61 17 73 16 75 0.91 # 18917 # 19228 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_47 - 128 HTH_26 PF13443.1 63 1.5e-05 17.2 0.0 1 2 0.00014 0.0037 9.5 0.0 12 34 23 45 17 51 0.86 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_47 - 128 HTH_26 PF13443.1 63 1.5e-05 17.2 0.0 2 2 0.0022 0.055 5.7 0.0 10 51 74 114 68 115 0.87 # 38093 # 38476 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_14 - 657 Zn-ribbon_8 PF09723.5 42 6.4e-06 18.1 2.5 1 2 0.00011 0.0057 8.6 0.1 20 39 553 572 549 573 0.82 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 Zn-ribbon_8 PF09723.5 42 6.4e-06 18.1 2.5 2 2 0.00012 0.0059 8.6 0.5 26 39 609 622 602 624 0.82 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_21 - 216 Sigma70_ECF PF07638.6 185 4.7e-05 15.0 0.3 1 1 1.7e-06 8.6e-05 14.2 0.3 108 176 135 207 118 214 0.74 # 17124 # 17771 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.630 1_29 - 126 MarR_2 PF12802.2 62 0.00014 13.6 0.8 1 1 7.6e-06 0.00039 12.1 0.8 23 48 59 84 24 85 0.89 # 23554 # 23931 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.577 1_14 - 657 zinc_ribbon_2 PF13240.1 23 2.4e-05 15.8 3.1 1 2 0.00047 0.024 6.2 0.6 16 21 562 567 557 569 0.66 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 zinc_ribbon_2 PF13240.1 23 2.4e-05 15.8 3.1 2 2 5.8e-05 0.003 9.1 0.1 2 9 612 619 605 620 0.74 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_24 - 104 HTH_Crp_2 PF13545.1 76 5.7e-05 14.9 0.0 1 1 1.9e-06 9.5e-05 14.2 0.0 25 50 20 45 10 46 0.88 # 18917 # 19228 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_10 - 820 AAA_10 PF12846.2 304 2.8e-41 133.8 0.0 1 1 8.1e-43 4.1e-41 133.2 0.0 2 303 466 741 465 742 0.90 # 8022 # 10481 # -1 # ID=1_10;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_36 - 217 HTH_20 PF12840.2 61 0.00011 14.0 0.1 1 1 1.7e-05 0.00085 11.1 0.0 21 46 21 46 9 55 0.86 # 29079 # 29729 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.637 1_30 - 251 ArsA_ATPase PF02374.10 305 3.9e-11 34.4 0.4 1 1 5.7e-11 2.9e-09 28.3 0.3 2 136 2 119 1 190 0.68 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_30 - 251 AAA_31 PF13614.1 157 8.6e-12 37.2 0.0 1 1 1.3e-12 6.6e-11 34.3 0.0 2 154 3 145 2 147 0.80 # 23935 # 24687 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_40 - 272 Pterin_bind PF00809.17 210 1.4e-60 196.1 0.0 1 1 3.4e-62 1.7e-60 195.9 0.0 1 209 10 216 10 217 0.98 # 32100 # 32915 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.609 1_2 - 344 IstB_IS21 PF01695.12 178 0.00017 13.0 0.0 1 2 3.2e-05 0.0016 9.8 0.0 38 63 158 182 130 190 0.71 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_2 - 344 IstB_IS21 PF01695.12 178 0.00017 13.0 0.0 2 2 0.021 1.1 0.6 0.0 114 132 202 220 193 223 0.91 # 1903 # 2934 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.557 1_14 - 657 Zn_ribbon_recom PF13408.1 58 1.7e-06 20.2 10.8 1 2 9.6e-06 0.00049 12.4 1.5 8 40 562 589 562 595 0.81 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 1_14 - 657 Zn_ribbon_recom PF13408.1 58 1.7e-06 20.2 10.8 2 2 1e-05 0.00052 12.3 2.3 8 42 612 646 611 651 0.78 # 11546 # 13516 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.600 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/6a60a702-04c3-419d-b0cc-c4c0af3a4e81 # Target file: checkm_output/bins/pm1540/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1540/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6a60a702-04c3-419d-b0cc-c4c0af3a4e81 checkm_output/bins/pm1540/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:45:52 2017 # [ok]