# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_62 - 389 KaiC PF06745.8 227 0.00025 12.6 0.0 1 1 6.2e-06 0.00045 11.8 0.0 13 43 151 182 133 203 0.65 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_62 - 389 ABC_tran PF00005.22 137 2.5e-05 17.1 0.0 1 1 1.2e-06 4.4e-05 16.3 0.0 12 33 158 179 147 206 0.83 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_70 - 498 ABC_tran PF00005.22 137 3.4e-05 16.6 1.0 1 1 2.8e-06 0.0001 15.1 0.1 13 39 224 250 219 326 0.81 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_62 - 389 FtsK_SpoIIIE PF01580.13 205 7.1e-05 14.8 0.0 1 1 2e-06 0.00015 13.7 0.0 40 58 159 177 141 184 0.83 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_62 - 389 MobB PF03205.9 140 0.00026 13.2 0.0 1 1 6.1e-06 0.00044 12.4 0.0 3 24 160 181 158 187 0.89 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_14 - 351 DUF3584 PF12128.3 1201 0.0037 7.0 50.2 1 2 0.003 0.22 1.1 0.4 706 755 55 105 46 111 0.63 # 9204 # 10256 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 1_14 - 351 DUF3584 PF12128.3 1201 0.0037 7.0 50.2 2 2 8.7e-05 0.0064 6.2 50.1 248 505 76 336 66 346 0.80 # 9204 # 10256 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.587 1_70 - 498 AAA_19 PF13245.1 76 4.2e-05 15.8 0.0 1 1 1.5e-06 0.00011 14.5 0.0 4 35 215 246 212 306 0.85 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_22 - 218 CbiA PF01656.18 195 1.1e-22 72.8 0.1 1 1 2.6e-24 1.9e-22 72.1 0.1 2 188 4 176 3 183 0.79 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_8 - 98 Sigma70_r4_2 PF08281.7 54 4.8e-11 34.5 0.0 1 1 9.9e-13 7.2e-11 33.9 0.0 3 54 9 59 7 59 0.93 # 4232 # 4525 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_32 - 133 zf-ribbon_3 PF13248.1 26 0.00034 12.3 1.9 1 2 0.0011 0.08 4.8 0.3 3 9 1 7 1 11 0.73 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_32 - 133 zf-ribbon_3 PF13248.1 26 0.00034 12.3 1.9 2 2 0.00025 0.018 6.8 0.1 4 13 36 46 34 52 0.73 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_62 - 389 AAA_23 PF13476.1 202 1.9e-08 27.3 0.0 1 1 9.2e-10 3.3e-08 26.5 0.0 13 41 149 179 142 198 0.85 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_70 - 498 AAA_23 PF13476.1 202 4.2e-06 19.6 0.2 1 2 0.043 1.6 1.5 0.1 154 177 58 81 15 130 0.61 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 AAA_23 PF13476.1 202 4.2e-06 19.6 0.2 2 2 1.8e-06 6.6e-05 15.7 0.0 20 37 223 240 217 272 0.90 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_32 - 133 zf-TFIIB PF13453.1 41 7.5e-06 17.6 0.3 1 1 2e-07 1.5e-05 16.7 0.3 1 25 2 40 2 41 0.85 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_50 - 1025 Zeta_toxin PF06414.7 201 0.00084 10.9 0.1 1 2 0.0014 0.051 5.1 0.0 19 38 505 524 494 534 0.79 # 36712 # 39786 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_50 - 1025 Zeta_toxin PF06414.7 201 0.00084 10.9 0.1 2 2 0.007 0.26 2.8 0.0 109 156 821 864 817 890 0.77 # 36712 # 39786 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_62 - 389 Zeta_toxin PF06414.7 201 0.00088 10.8 0.0 1 1 3.9e-05 0.0014 10.2 0.0 15 40 156 181 145 195 0.80 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_70 - 498 AAA_30 PF13604.1 196 1.3e-05 17.3 0.0 1 1 4e-07 2.9e-05 16.1 0.0 7 48 211 252 207 279 0.88 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_8 - 98 GerE PF00196.14 58 4.2e-07 21.7 0.0 1 1 1.4e-08 1e-06 20.5 0.0 2 44 15 57 14 65 0.90 # 4232 # 4525 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_22 - 218 MipZ PF09140.6 261 1e-12 40.1 1.1 1 2 4.9e-10 3.6e-08 25.2 0.1 2 45 2 45 1 59 0.86 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_22 - 218 MipZ PF09140.6 261 1e-12 40.1 1.1 2 2 2.5e-06 0.00018 13.1 0.1 89 128 71 110 66 166 0.82 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_62 - 389 AAA_21 PF13304.1 303 0.00054 12.4 0.0 1 1 1.2e-05 0.00089 11.7 0.0 2 37 160 197 159 216 0.67 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_32 - 133 HTH_37 PF13744.1 80 0.0005 12.4 0.0 1 1 8.9e-06 0.00065 12.0 0.0 22 68 73 120 49 123 0.81 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_32 - 133 zf-C4_Topoisom PF01396.14 39 0.00011 14.2 0.5 1 2 0.001 0.076 5.1 0.1 3 11 2 11 1 14 0.81 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_32 - 133 zf-C4_Topoisom PF01396.14 39 0.00011 14.2 0.5 2 2 0.00021 0.016 7.3 0.0 3 15 36 48 34 51 0.86 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_22 - 218 cobW PF02492.14 178 1.4e-05 17.0 0.0 1 1 4.1e-07 3e-05 16.0 0.0 10 159 11 155 4 171 0.70 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_70 - 498 AAA_16 PF13191.1 185 3.1e-06 19.7 0.0 1 1 1.5e-07 5.3e-06 19.0 0.0 11 63 213 261 208 368 0.68 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_62 - 389 AAA_16 PF13191.1 185 6e-05 15.5 0.6 1 1 5.4e-06 0.0002 13.8 0.1 25 48 158 181 144 194 0.85 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_70 - 498 AAA_22 PF13401.1 131 5.5e-07 22.3 0.0 1 1 4.4e-08 1.6e-06 20.8 0.0 4 76 222 289 218 333 0.63 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_62 - 389 AAA_22 PF13401.1 131 8.8e-06 18.4 0.0 1 1 5.1e-07 1.9e-05 17.3 0.0 3 26 156 179 151 236 0.78 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_30 - 290 Methyltransf_27 PF13708.1 194 9.2e-72 233.1 0.1 1 1 1.7e-73 1.2e-71 232.7 0.1 2 194 92 285 91 285 0.97 # 18761 # 19630 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.441 1_62 - 389 AAA_29 PF13555.1 62 3.1e-06 19.2 0.0 1 1 2.5e-07 9.2e-06 17.7 0.0 22 43 157 177 147 192 0.85 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_70 - 498 AAA_29 PF13555.1 62 1.6e-05 16.9 0.0 1 1 1.3e-06 4.6e-05 15.4 0.0 20 40 220 239 213 250 0.84 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 AAA_28 PF13521.1 163 0.0006 12.2 0.2 1 2 0.016 1.2 1.6 0.1 27 81 27 82 5 101 0.68 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 AAA_28 PF13521.1 163 0.0006 12.2 0.2 2 2 0.00015 0.011 8.2 0.0 2 22 225 245 224 263 0.84 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_32 - 133 HTH_3 PF01381.17 55 9.3e-06 18.0 0.0 1 1 2.5e-07 1.8e-05 17.0 0.0 1 46 74 118 74 127 0.87 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_70 - 498 Rad17 PF03215.10 519 5.8e-05 14.3 0.0 1 1 1.5e-06 0.00011 13.4 0.0 39 86 217 263 209 279 0.78 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_22 - 218 Fer4_NifH PF00142.13 273 0.00039 12.1 0.1 1 1 1e-05 0.00075 11.1 0.1 8 42 9 43 4 56 0.85 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_32 - 133 HTH_19 PF12844.2 64 4.5e-06 19.2 0.0 1 1 1.1e-07 7.9e-06 18.4 0.0 4 48 74 117 73 123 0.89 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_70 - 498 G-alpha PF00503.15 389 0.00015 13.0 0.1 1 1 3.6e-06 0.00027 12.1 0.1 60 87 224 251 209 261 0.80 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 Arch_ATPase PF01637.13 234 0.00031 12.9 0.4 1 2 0.039 2.8 -0.0 0.2 51 119 38 110 24 139 0.69 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 Arch_ATPase PF01637.13 234 0.00031 12.9 0.4 2 2 2.3e-05 0.0017 10.5 0.0 11 44 214 246 209 267 0.83 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 AAA_5 PF07728.9 139 0.00022 13.4 0.0 1 1 5.7e-06 0.00041 12.5 0.0 2 64 225 294 224 325 0.77 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_43 - 728 TrwB_AAD_bind PF10412.4 386 0.00014 13.0 0.0 1 2 0.00022 0.016 6.2 0.0 12 35 136 159 127 177 0.84 # 27426 # 29609 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_43 - 728 TrwB_AAD_bind PF10412.4 386 0.00014 13.0 0.0 2 2 0.00085 0.062 4.3 0.0 93 152 241 301 233 321 0.79 # 27426 # 29609 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 218 TIGR01968 TIGR01968 261 1.2e-07 23.4 5.1 1 2 9e-09 6.5e-07 21.0 0.9 3 39 2 38 1 43 0.94 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_22 - 218 TIGR01968 TIGR01968 261 1.2e-07 23.4 5.1 2 2 0.0012 0.084 4.3 0.1 105 198 74 171 68 213 0.75 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_70 - 498 AAA_18 PF13238.1 129 7e-05 15.6 0.0 1 1 2.8e-06 0.0002 14.1 0.0 1 32 225 253 225 346 0.72 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_46 - 212 APG12 PF04110.8 87 0.00028 13.6 0.0 1 2 0.0059 0.43 3.4 0.0 49 74 85 112 66 121 0.67 # 32014 # 32649 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.381 1_46 - 212 APG12 PF04110.8 87 0.00028 13.6 0.0 2 2 0.00022 0.016 7.9 0.0 37 58 139 160 124 178 0.84 # 32014 # 32649 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.381 1_62 - 389 DUF87 PF01935.12 229 0.00043 12.6 0.0 1 1 1e-05 0.00075 11.8 0.0 27 45 161 179 156 195 0.90 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_64 - 152 LptC PF06835.8 176 0.00036 12.4 0.0 1 1 7e-06 0.00051 11.9 0.0 84 131 28 74 17 80 0.79 # 51952 # 52407 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.487 1_62 - 389 Miro PF08477.8 119 0.00024 14.1 0.0 1 1 1.4e-05 0.001 12.0 0.0 2 20 160 178 159 202 0.85 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_32 - 133 HTH_31 PF13560.1 64 4.4e-07 22.6 0.0 1 1 1e-08 7.3e-07 21.8 0.0 5 48 73 115 72 130 0.87 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_70 - 498 T2SE PF00437.15 272 2.6e-47 153.4 0.1 1 1 1.1e-48 4.2e-47 152.7 0.1 11 270 94 370 85 372 0.87 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_62 - 389 T2SE PF00437.15 272 2.1e-35 114.3 0.0 1 1 9.6e-37 3.5e-35 113.6 0.0 8 270 26 307 20 309 0.75 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_62 - 389 NACHT PF05729.7 166 8.6e-05 14.7 0.0 1 1 4.8e-06 0.00018 13.7 0.0 2 23 159 180 158 193 0.85 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_70 - 498 NACHT PF05729.7 166 0.00046 12.3 0.1 1 2 0.0001 0.0038 9.3 0.0 3 28 225 250 223 259 0.84 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 NACHT PF05729.7 166 0.00046 12.3 0.1 2 2 0.073 2.7 0.1 0.0 107 147 362 401 341 413 0.69 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 AAA_17 PF13207.1 121 3.6e-05 17.1 0.1 1 1 2.5e-06 0.00018 14.8 0.0 1 21 224 244 224 306 0.83 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_62 - 389 AAA_25 PF13481.1 194 1.2e-05 17.3 0.1 1 1 1.8e-06 4.4e-05 15.4 0.1 28 53 152 177 123 181 0.89 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_22 - 218 AAA_25 PF13481.1 194 4e-05 15.5 0.1 1 1 4.5e-06 0.00011 14.1 0.0 42 80 10 52 3 60 0.83 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_70 - 498 AAA_25 PF13481.1 194 0.00049 12.0 0.7 1 1 0.00011 0.0026 9.6 0.0 20 50 208 239 196 244 0.84 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 498 AAA_14 PF13173.1 128 0.00013 14.3 0.1 1 1 5.4e-06 0.00039 12.8 0.0 3 29 223 249 221 283 0.80 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_62 - 389 AAA_33 PF13671.1 143 0.0001 14.7 0.0 1 1 1.7e-05 0.00061 12.2 0.0 1 22 159 180 159 218 0.89 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_70 - 498 AAA_33 PF13671.1 143 0.00025 13.4 0.1 1 1 2.2e-05 0.00081 11.7 0.0 1 46 224 266 224 321 0.72 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_43 - 728 T4SS-DNA_transf PF02534.9 469 3.4e-06 18.3 0.0 1 1 1.1e-07 8.4e-06 17.0 0.0 36 180 130 289 104 307 0.71 # 27426 # 29609 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_62 - 389 ATP_bind_1 PF03029.12 238 0.00055 11.9 0.0 1 1 1.1e-05 0.00082 11.4 0.0 1 21 162 182 162 194 0.89 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_32 - 133 TF_Zn_Ribbon PF08271.7 43 4.5e-05 15.2 0.5 1 2 1.3e-05 0.00098 11.0 0.0 1 14 1 14 1 21 0.83 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_32 - 133 TF_Zn_Ribbon PF08271.7 43 4.5e-05 15.2 0.5 2 2 0.0057 0.41 2.6 0.1 21 28 36 44 24 50 0.72 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_32 - 133 Prim_Zn_Ribbon PF08273.7 40 0.0022 10.6 3.0 1 1 1.8e-05 0.0013 11.3 0.5 6 33 3 41 1 50 0.79 # 20031 # 20429 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.466 1_8 - 98 HTH_11 PF08279.7 55 0.00018 13.6 0.1 1 1 3.6e-06 0.00026 13.1 0.1 20 43 36 59 34 71 0.87 # 4232 # 4525 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_8 - 98 HTH_Crp_2 PF13545.1 76 0.00022 13.5 0.0 1 1 3.8e-06 0.00028 13.2 0.0 26 59 29 62 18 77 0.83 # 4232 # 4525 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.340 1_50 - 1025 AAA_10 PF12846.2 304 4e-40 130.5 0.0 1 1 4.3e-41 6.2e-40 129.9 0.0 7 304 508 906 503 906 0.93 # 36712 # 39786 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.498 1_43 - 728 AAA_10 PF12846.2 304 2e-06 19.9 0.1 1 1 2.7e-07 3.9e-06 18.9 0.1 3 289 141 506 140 517 0.66 # 27426 # 29609 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.483 1_62 - 389 AAA_10 PF12846.2 304 1.8e-05 16.7 0.0 1 1 2.5e-06 3.7e-05 15.7 0.0 3 36 159 195 157 199 0.78 # 49996 # 51162 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.488 1_70 - 498 AAA_10 PF12846.2 304 0.00015 13.7 0.0 1 1 1.6e-05 0.00023 13.1 0.0 4 47 225 273 222 350 0.79 # 56860 # 58353 # -1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_22 - 218 AAA_10 PF12846.2 304 0.00045 12.1 0.0 1 1 4.5e-05 0.00066 11.6 0.0 11 45 11 47 5 111 0.89 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_22 - 218 ArsA_ATPase PF02374.10 305 9.7e-05 13.9 1.0 1 1 2.1e-06 0.00015 13.3 0.4 8 38 8 38 1 43 0.87 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 1_22 - 218 AAA_31 PF13614.1 157 8.6e-06 18.2 0.0 1 1 5.2e-07 3.8e-05 16.1 0.0 4 44 4 44 2 58 0.87 # 14314 # 14967 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.430 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f5385269-27d3-4d58-856a-172f586df3a6 # Target file: checkm_output/bins/pm1532/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1532/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f5385269-27d3-4d58-856a-172f586df3a6 checkm_output/bins/pm1532/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:45:39 2017 # [ok]