# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_89 - 263 ATP-synt_ab PF00006.20 215 0.00065 12.3 0.0 1 1 7.2e-06 0.00081 12.0 0.0 6 63 22 79 17 214 0.80 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 KaiC PF06745.8 227 0.00039 12.6 0.0 1 1 7.1e-06 0.00079 11.6 0.0 2 40 16 50 15 57 0.91 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 ABC_tran PF00005.22 137 5.8e-33 107.2 0.0 1 1 7.5e-35 8.4e-33 106.6 0.0 3 136 21 167 19 168 0.96 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_104 - 69 rve_3 PF13683.1 67 1.7e-10 33.4 0.1 1 1 1.9e-12 2.1e-10 33.1 0.1 19 67 2 50 1 50 0.94 # 76638 # 76844 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.527 1_22 - 89 HTH_40 PF14493.1 91 5.8e-05 16.4 0.1 1 1 6.4e-07 7.2e-05 16.1 0.1 7 44 27 63 22 87 0.81 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_89 - 263 MobB PF03205.9 140 0.00049 12.9 0.0 1 1 9.8e-06 0.0011 11.8 0.0 4 32 33 61 30 78 0.86 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_99 - 702 HTH_34 PF13601.1 80 0.00069 12.8 0.1 1 1 3e-05 0.0034 10.5 0.0 40 72 259 291 248 294 0.89 # 71601 # 73706 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_63 - 99 TetR_N PF00440.18 47 0.00078 12.2 0.0 1 2 8.2e-05 0.0092 8.8 0.0 3 23 2 22 1 24 0.94 # 39640 # 39936 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_63 - 99 TetR_N PF00440.18 47 0.00078 12.2 0.0 2 2 0.022 2.5 1.0 0.0 20 30 82 92 76 93 0.86 # 39640 # 39936 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_52 - 185 AAA_19 PF13245.1 76 2.1e-08 26.9 0.4 1 1 6.7e-10 3.8e-08 26.1 0.4 3 76 25 95 23 95 0.79 # 33203 # 33757 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_89 - 263 AAA_19 PF13245.1 76 0.00017 14.5 0.0 1 1 8.4e-06 0.00047 13.0 0.0 10 51 29 65 22 68 0.82 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_5 - 239 CbiA PF01656.18 195 4.7e-05 15.9 2.0 1 2 0.00018 0.02 7.3 0.2 1 20 3 22 3 30 0.92 # 3389 # 4105 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_5 - 239 CbiA PF01656.18 195 4.7e-05 15.9 2.0 2 2 0.00017 0.018 7.4 0.1 118 170 97 147 91 175 0.83 # 3389 # 4105 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.324 1_72 - 243 Sigma70_r4_2 PF08281.7 54 6.3e-07 21.9 0.0 1 1 3.9e-08 1.1e-06 21.1 0.0 21 50 172 201 165 205 0.84 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_22 - 89 Sigma70_r4_2 PF08281.7 54 1e-06 21.2 0.1 1 1 5.5e-08 1.5e-06 20.7 0.1 8 51 16 58 11 60 0.86 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_21 - 204 Sigma70_r4_2 PF08281.7 54 0.00022 13.7 0.0 1 1 1.8e-05 0.00049 12.6 0.0 19 48 134 162 128 167 0.87 # 13294 # 13905 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_63 - 99 Sigma70_r4_2 PF08281.7 54 0.00054 12.5 0.1 1 1 3.1e-05 0.00086 11.9 0.1 4 39 57 91 54 93 0.91 # 39640 # 39936 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_103 - 137 rve PF00665.21 120 7.1e-18 58.0 0.0 1 1 8.2e-20 9.2e-18 57.6 0.0 2 98 37 131 36 136 0.94 # 76218 # 76628 # 1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.569 1_89 - 263 AAA_23 PF13476.1 202 3.2e-05 17.4 0.0 1 1 5.5e-07 6.2e-05 16.4 0.0 11 39 20 49 11 56 0.78 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 Zeta_toxin PF06414.7 201 0.0001 14.5 0.0 1 1 1.8e-06 0.0002 13.5 0.0 17 52 30 66 23 74 0.91 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_52 - 185 AAA_30 PF13604.1 196 5.1e-40 130.2 0.3 1 1 1e-41 5.7e-40 130.0 0.3 2 162 17 182 16 184 0.96 # 33203 # 33757 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_89 - 263 AAA_30 PF13604.1 196 0.00013 14.6 0.2 1 1 7.3e-06 0.00041 13.0 0.0 16 51 27 62 20 81 0.87 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 SMC_N PF02463.14 220 5.8e-10 31.8 0.1 1 1 4.2e-10 4.7e-08 25.5 0.1 24 212 29 214 15 220 0.64 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_102 - 108 HTH_Tnp_1 PF01527.15 76 7.7e-11 34.9 1.0 1 1 2.7e-12 3e-10 33.1 1.0 1 74 1 86 1 87 0.87 # 75628 # 75951 # 1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_72 - 243 GerE PF00196.14 58 6.3e-15 47.4 0.0 1 1 2.9e-16 1.1e-14 46.6 0.0 2 54 161 213 160 217 0.95 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_22 - 89 GerE PF00196.14 58 5.3e-13 41.2 0.2 1 1 1.7e-14 6.2e-13 41.0 0.2 2 54 17 69 16 73 0.93 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_21 - 204 GerE PF00196.14 58 1.3e-10 33.6 0.0 1 1 5.4e-12 2e-10 33.0 0.0 2 54 124 176 123 179 0.94 # 13294 # 13905 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.408 1_73 - 139 DDE_Tnp_1 PF01609.16 213 1.3e-10 34.2 0.1 1 1 2.5e-12 1.4e-10 34.1 0.1 42 149 4 113 1 125 0.86 # 45996 # 46412 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.516 1_107 - 193 DDE_Tnp_1 PF01609.16 213 2.3e-06 20.3 0.0 1 1 6.1e-08 3.4e-06 19.8 0.0 3 64 114 176 112 186 0.90 # 77809 # 78387 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_97 - 402 Ala_racemase_N PF01168.15 218 4.1e-14 45.7 1.2 1 1 1.6e-15 1.8e-13 43.6 1.2 2 172 29 210 28 237 0.80 # 68581 # 69786 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.591 1_89 - 263 AAA_21 PF13304.1 303 3e-14 46.7 0.0 1 2 4e-09 4.5e-07 23.1 0.0 1 24 31 54 31 83 0.83 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_21 PF13304.1 303 3e-14 46.7 0.0 2 2 1.1e-08 1.2e-06 21.7 0.0 232 301 135 202 115 203 0.91 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_22 - 89 Sigma70_r4 PF04545.11 50 3.7e-05 16.1 0.1 1 1 1e-06 5.6e-05 15.5 0.1 4 47 18 60 15 60 0.90 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_72 - 243 Sigma70_r4 PF04545.11 50 0.0005 12.5 0.0 1 1 1.5e-05 0.00082 11.8 0.0 18 48 175 205 163 206 0.89 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_89 - 263 AAA PF00004.24 132 2.2e-05 17.8 0.1 1 1 8.4e-07 9.4e-05 15.7 0.1 2 38 33 84 32 203 0.75 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 TIGR00064 TIGR00064 279 0.0002 13.4 0.0 1 1 3.1e-06 0.00035 12.6 0.0 79 117 29 67 8 75 0.88 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_104 - 69 rve_2 PF13333.1 52 2.5e-09 30.2 0.1 1 1 2.7e-11 3e-09 30.0 0.1 1 40 3 42 3 62 0.82 # 76638 # 76844 # 1 # ID=1_104;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.527 1_89 - 263 cobW PF02492.14 178 0.00015 14.3 0.0 1 1 2.9e-06 0.00033 13.2 0.0 2 36 31 64 30 79 0.89 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_16 PF13191.1 185 1.1e-08 28.3 1.5 1 1 3.4e-10 3.8e-08 26.6 1.5 2 160 12 201 11 221 0.61 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_87 - 212 NodS PF05401.6 201 0.00068 12.1 0.3 1 2 0.00019 0.021 7.3 0.0 133 160 70 97 62 111 0.79 # 57634 # 58269 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_87 - 212 NodS PF05401.6 201 0.00068 12.1 0.3 2 2 0.0035 0.39 3.1 0.1 54 79 111 136 103 154 0.81 # 57634 # 58269 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.546 1_89 - 263 AAA_22 PF13401.1 131 8.7e-07 22.2 0.5 1 1 4e-08 4.5e-06 19.9 0.5 6 123 31 197 26 205 0.70 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_29 PF13555.1 62 8.1e-08 24.8 0.0 1 1 2.6e-09 1.5e-07 24.0 0.0 21 51 27 57 18 65 0.86 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_41 - 316 AAA_29 PF13555.1 62 0.0013 11.3 0.4 1 1 5.1e-05 0.0028 10.3 0.4 12 38 153 176 148 179 0.84 # 23921 # 24868 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_97 - 402 Orn_Arg_deC_N PF02784.11 251 6e-34 110.4 0.0 1 1 6.6e-36 7.4e-34 110.0 0.0 5 250 33 279 29 280 0.87 # 68581 # 69786 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.591 1_89 - 263 SRP54 PF00448.17 196 2.6e-05 16.8 0.0 1 1 4e-07 4.5e-05 16.0 0.0 2 41 30 69 29 79 0.92 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_28 PF13521.1 163 0.00017 14.6 0.2 1 1 3.5e-06 0.0004 13.4 0.0 3 22 33 52 31 99 0.81 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 Rad17 PF03215.10 519 0.0013 10.5 0.3 1 1 2e-05 0.0022 9.7 0.0 41 74 27 58 18 78 0.77 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_22 - 89 HTH_23 PF13384.1 50 2.8e-06 20.0 0.0 1 1 7.1e-08 4e-06 19.5 0.0 8 37 24 53 18 66 0.88 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_72 - 243 HTH_23 PF13384.1 50 9.1e-05 15.2 0.0 1 1 2.9e-06 0.00016 14.4 0.0 13 39 173 200 166 208 0.79 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_89 - 263 Mg_chelatase PF01078.16 207 0.00018 13.7 0.1 1 2 1.3e-05 0.0014 10.8 0.0 26 61 33 68 16 101 0.86 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 Mg_chelatase PF01078.16 207 0.00018 13.7 0.1 2 2 0.014 1.6 0.9 0.0 90 134 140 190 117 230 0.68 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_52 - 185 Reprolysin_4 PF13583.1 206 0.00043 12.9 0.0 1 1 6.2e-06 0.00069 12.2 0.0 111 190 70 159 40 165 0.76 # 33203 # 33757 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_89 - 263 G-alpha PF00503.15 389 6.5e-05 14.7 0.0 1 1 1e-06 0.00011 14.0 0.0 62 85 33 56 27 72 0.92 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_99 - 702 Plug PF07715.10 108 3.3e-17 55.9 1.0 1 1 1.2e-18 1.4e-16 53.9 1.0 2 108 42 146 41 146 0.93 # 71601 # 73706 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_100 - 459 TIGR00508 TIGR00508 419 1.2e-67 221.0 0.0 1 1 1.4e-69 1.6e-67 220.6 0.0 13 415 37 446 29 450 0.89 # 73810 # 75186 # -1 # ID=1_100;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.562 1_89 - 263 Arch_ATPase PF01637.13 234 1.9e-05 17.5 0.0 1 2 7.1e-07 7.9e-05 15.5 0.0 4 46 15 55 13 74 0.81 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 Arch_ATPase PF01637.13 234 1.9e-05 17.5 0.0 2 2 0.057 6.3 -0.6 0.0 106 123 178 196 130 212 0.73 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_52 - 185 PhoH PF02562.11 205 0.0004 12.7 0.0 1 2 1.6e-05 0.0018 10.6 0.1 6 61 18 77 15 102 0.84 # 33203 # 33757 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_52 - 185 PhoH PF02562.11 205 0.0004 12.7 0.0 2 2 0.037 4.1 -0.4 0.0 122 158 115 152 111 159 0.80 # 33203 # 33757 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_89 - 263 AAA_5 PF07728.9 139 6.2e-06 19.1 0.4 1 2 7.6e-07 8.5e-05 15.4 0.0 3 30 33 62 32 79 0.81 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_5 PF07728.9 139 6.2e-06 19.1 0.4 2 2 0.017 1.9 1.3 0.1 59 123 151 224 134 234 0.54 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_43 - 368 Peptidase_M64 PF09471.5 264 2e-79 260.0 0.0 1 1 2.1e-81 2.4e-79 259.7 0.0 2 264 35 287 34 287 0.98 # 25547 # 26650 # -1 # ID=1_43;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.329 1_89 - 263 DUF258 PF03193.11 161 1.1e-06 21.0 0.0 1 1 1.5e-08 1.7e-06 20.3 0.0 14 60 7 54 1 78 0.82 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_72 - 243 HTH_28 PF13518.1 52 0.0002 14.4 0.0 1 1 3.3e-06 0.00037 13.6 0.0 9 44 174 210 168 214 0.82 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_72 - 243 DUF2089 PF09862.4 113 5e-06 19.4 0.0 1 1 9.9e-08 1.1e-05 18.3 0.0 53 81 181 209 163 217 0.82 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_72 - 243 HTH_24 PF13412.1 48 0.00043 12.8 0.1 1 1 7.7e-06 0.00086 11.8 0.1 17 39 177 199 174 201 0.92 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_9 - 137 RPA PF10134.4 229 6.3e-34 110.2 0.1 1 1 8.4e-36 9.4e-34 109.7 0.1 141 228 2 87 1 88 0.98 # 8202 # 8612 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.380 1_72 - 243 HTH_10 PF04967.7 53 3.9e-05 16.3 0.1 1 1 1.6e-06 8.8e-05 15.2 0.1 24 51 178 205 163 206 0.94 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_22 - 89 HTH_10 PF04967.7 53 0.00034 13.3 0.0 1 1 1.1e-05 0.00062 12.4 0.0 26 50 36 60 32 61 0.91 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_52 - 185 DEAD PF00270.24 169 3.1e-05 16.6 0.1 1 1 3.3e-07 3.7e-05 16.3 0.1 1 54 18 75 18 146 0.82 # 33203 # 33757 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_76 - 159 Dala_Dala_lig_C PF07478.8 203 0.00083 11.8 0.0 1 1 1e-05 0.0011 11.4 0.0 62 114 51 100 42 113 0.82 # 50824 # 51300 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.308 1_89 - 263 Miro PF08477.8 119 0.00014 15.4 0.0 1 1 2.9e-06 0.00033 14.2 0.0 3 25 33 55 30 124 0.85 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_50 - 141 UvrD_C_2 PF13538.1 104 5e-09 29.4 0.3 1 1 6.4e-11 7.1e-09 28.9 0.3 55 103 1 50 1 51 0.89 # 32233 # 32655 # -1 # ID=1_50;partial=00;start_type=TTG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.648 1_46 - 299 HTH_36 PF13730.1 55 0.00021 14.5 0.0 1 1 7.1e-06 0.0008 12.7 0.0 12 55 93 145 90 145 0.75 # 29806 # 30702 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_41 - 316 T2SE PF00437.15 272 1.2e-49 161.7 0.0 1 1 1.5e-51 1.7e-49 161.2 0.0 6 240 18 278 14 286 0.95 # 23921 # 24868 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_89 - 263 NACHT PF05729.7 166 6.1e-06 19.0 1.6 1 2 3.5e-07 2e-05 17.4 0.1 2 27 31 56 30 62 0.89 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 NACHT PF05729.7 166 6.1e-06 19.0 1.6 2 2 0.056 3.2 0.5 0.2 110 155 147 190 92 200 0.63 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_28 - 487 NACHT PF05729.7 166 3.1e-05 16.7 0.2 1 1 3.4e-06 0.00019 14.2 0.0 5 36 178 206 176 218 0.79 # 17057 # 18517 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 1_89 - 263 UPF0079 PF02367.12 123 0.00055 12.7 0.0 1 1 9.8e-06 0.0011 11.7 0.0 10 42 24 56 16 64 0.84 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_17 PF13207.1 121 0.0004 14.3 0.1 1 1 1.1e-05 0.0013 12.7 0.1 4 35 34 68 31 254 0.82 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 TIGR02211 TIGR02211 221 1.5e-28 92.6 0.2 1 2 4e-11 4.4e-09 28.9 0.0 17 70 15 68 6 80 0.91 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 TIGR02211 TIGR02211 221 1.5e-28 92.6 0.2 2 2 3.4e-21 3.8e-19 61.8 0.1 118 213 116 211 107 239 0.89 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_25 PF13481.1 194 2.1e-06 20.3 0.6 1 2 2.5e-07 1.4e-05 17.6 0.0 28 55 21 51 12 82 0.78 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_25 PF13481.1 194 2.1e-06 20.3 0.6 2 2 0.04 2.2 0.7 0.2 135 188 152 198 106 199 0.56 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_28 - 487 AAA_25 PF13481.1 194 0.00049 12.6 0.1 1 1 2.6e-05 0.0015 11.0 0.0 37 93 177 233 171 292 0.77 # 17057 # 18517 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 1_89 - 263 Viral_helicase1 PF01443.13 234 0.00063 12.3 0.1 1 1 1.3e-05 0.0015 11.2 0.0 5 25 36 53 32 77 0.80 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_15 PF13175.1 415 8.1e-10 31.3 0.2 1 2 4.2e-06 0.00047 12.3 0.0 22 42 28 49 12 67 0.80 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_15 PF13175.1 415 8.1e-10 31.3 0.2 2 2 1.4e-07 1.6e-05 17.1 0.1 371 410 158 198 149 209 0.88 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_41 - 316 Pox_A32 PF04665.7 241 2.1e-06 20.2 0.0 1 1 2.8e-08 3.1e-06 19.7 0.0 17 78 165 223 154 238 0.84 # 23921 # 24868 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.513 1_89 - 263 AAA_14 PF13173.1 128 1.3e-05 18.2 0.0 1 2 6.4e-07 7.1e-05 15.8 0.0 2 36 29 63 28 84 0.81 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_14 PF13173.1 128 1.3e-05 18.2 0.0 2 2 0.054 6 -0.1 0.0 62 85 158 187 133 215 0.60 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_22 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00025 13.3 0.1 1 1 5.9e-06 0.00033 12.9 0.1 21 51 27 57 21 58 0.83 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_72 - 243 HTH_Tnp_ISL3 PF13542.1 52 0.00033 12.9 0.0 1 1 1e-05 0.00059 12.1 0.0 24 50 175 200 174 202 0.86 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_89 - 263 AAA_33 PF13671.1 143 3.2e-05 16.9 0.1 1 1 6.3e-07 7e-05 15.8 0.1 3 78 33 136 31 204 0.54 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 ABC_ATPase PF09818.4 448 0.00013 13.7 0.1 1 2 9.3e-05 0.01 7.4 0.0 242 264 26 49 10 53 0.90 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 ABC_ATPase PF09818.4 448 0.00013 13.7 0.1 2 2 0.00093 0.1 4.1 0.0 324 355 141 172 134 218 0.81 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 SbcCD_C PF13558.1 90 5.7e-05 16.1 0.2 1 1 9.5e-06 0.0011 12.0 0.2 18 89 125 183 110 184 0.77 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 RNA_helicase PF00910.17 107 0.00039 13.7 0.0 1 1 7.2e-06 0.00081 12.7 0.0 2 23 33 54 32 77 0.76 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_72 - 243 HTH_11 PF08279.7 55 3.5e-06 19.7 0.0 1 1 1.1e-07 5.9e-06 19.0 0.0 13 42 176 204 166 212 0.80 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_22 - 89 HTH_11 PF08279.7 55 1.2e-05 18.0 0.6 1 1 3.6e-07 2e-05 17.3 0.6 6 36 24 54 20 57 0.80 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_107 - 193 DDE_Tnp_1_5 PF13737.1 112 2.2e-44 143.3 0.0 1 1 3.3e-46 3.6e-44 142.6 0.0 1 112 19 130 19 130 0.96 # 77809 # 78387 # 1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_72 - 243 Sigma70_ECF PF07638.6 185 0.0001 15.1 0.0 1 1 3e-06 0.00017 14.4 0.0 148 179 174 205 164 210 0.84 # 44414 # 45142 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_22 - 89 Sigma70_ECF PF07638.6 185 0.00084 12.1 0.0 1 1 1.6e-05 0.0009 12.0 0.0 141 178 21 60 6 67 0.73 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_22 - 89 HTH_5 PF01022.15 47 0.00025 13.8 0.2 1 1 3.5e-06 0.00039 13.2 0.2 8 37 26 55 20 56 0.87 # 13963 # 14229 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.288 1_89 - 263 DUF2813 PF11398.3 373 5e-05 15.5 0.0 1 1 1.4e-06 8e-05 14.8 0.0 23 71 30 78 19 85 0.85 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_4 - 103 DUF2813 PF11398.3 373 0.00038 12.6 0.1 1 1 7.5e-06 0.00042 12.5 0.1 210 289 8 84 1 91 0.83 # 3079 # 3387 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.346 1_94 - 259 LptE PF04390.7 155 0.00026 13.8 0.0 1 1 3.8e-06 0.00042 13.1 0.0 3 51 102 151 102 181 0.69 # 64598 # 65374 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.580 1_28 - 487 AAA_10 PF12846.2 304 7.4e-31 100.7 0.0 1 1 9.6e-33 1.1e-30 100.2 0.0 4 302 176 471 174 473 0.87 # 17057 # 18517 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 1_89 - 263 AAA_13 PF13166.1 712 6.4e-05 14.6 0.0 1 2 6.6e-06 0.00074 11.1 0.0 16 39 29 52 16 73 0.85 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 263 AAA_13 PF13166.1 712 6.4e-05 14.6 0.0 2 2 0.0056 0.62 1.4 0.0 527 572 157 201 151 211 0.86 # 59033 # 59821 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_81 - 309 Yae1_N PF09811.4 39 1.8e-05 17.3 2.2 1 1 5.8e-07 3.3e-05 16.5 2.2 10 31 251 272 251 277 0.90 # 53697 # 54623 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_19 - 74 Yae1_N PF09811.4 39 0.00023 13.8 6.2 1 1 7.4e-06 0.00042 13.0 6.2 7 34 9 36 8 41 0.81 # 12209 # 12430 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.486 1_52 - 185 AAA_11 PF13086.1 236 8.8e-09 28.3 0.0 1 2 1.9e-07 2.1e-05 17.2 0.0 2 70 17 82 16 99 0.84 # 33203 # 33757 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 1_52 - 185 AAA_11 PF13086.1 236 8.8e-09 28.3 0.0 2 2 5.3e-05 0.0059 9.2 0.0 195 232 115 155 98 158 0.78 # 33203 # 33757 # -1 # ID=1_52;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.616 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/f313e804-3c82-4a1d-9693-894c2c66f94c # Target file: checkm_output/bins/pm1516/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1516/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f313e804-3c82-4a1d-9693-894c2c66f94c checkm_output/bins/pm1516/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:45:04 2017 # [ok]