# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 520 HMGL-like PF00682.14 237 3e-91 294.4 0.3 1 1 5.9e-92 4.2e-91 293.9 0.3 1 236 13 251 13 252 0.99 # 3192 # 4751 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_5 - 282 Homeobox PF00046.24 57 2.4e-05 13.2 0.0 1 2 2.7e-05 0.00019 10.3 0.0 4 40 102 138 99 141 0.81 # 4891 # 5736 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.239 1_5 - 282 Homeobox PF00046.24 57 2.4e-05 13.2 0.0 2 2 0.041 0.29 0.1 0.0 18 42 189 213 175 214 0.77 # 4891 # 5736 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.239 1_4 - 520 Trp_syntA PF00290.15 259 1.7e-05 12.5 0.0 1 1 5.1e-06 3.6e-05 11.5 0.0 23 50 25 52 20 64 0.90 # 3192 # 4751 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.296 1_1 - 204 FAD_syn PF06574.7 158 5.8e-05 11.9 0.0 1 1 1.2e-05 8.5e-05 11.4 0.0 84 144 47 102 15 110 0.75 # 3 # 614 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.227 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/a2659f7e-8911-4ef3-8c22-ab1180a54837 # Target file: checkm_output/bins/pm1501/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1501/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a2659f7e-8911-4ef3-8c22-ab1180a54837 checkm_output/bins/pm1501/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:44:43 2017 # [ok]