# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_5 - 464 ATP-synt_ab PF00006.20 215 0.00026 13.5 0.0 1 1 9e-06 0.00049 12.6 0.0 15 70 49 105 45 165 0.81 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 ATP-synt_ab PF00006.20 215 0.00059 12.4 0.1 1 1 1.7e-05 0.00092 11.7 0.1 13 50 47 84 42 188 0.72 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_3 - 226 Cons_hypoth95 PF03602.10 183 9.7e-06 18.1 0.0 1 2 0.00022 0.024 7.1 0.0 112 156 18 64 2 82 0.65 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 226 Cons_hypoth95 PF03602.10 183 9.7e-06 18.1 0.0 2 2 5e-05 0.0054 9.1 0.0 41 62 162 183 145 213 0.80 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 2_22 - 359 KaiC PF06745.8 227 3.8e-05 15.9 0.0 1 1 1.2e-06 6.7e-05 15.1 0.0 13 46 41 78 20 98 0.76 # 22306 # 23382 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 3_5 - 464 KaiC PF06745.8 227 0.00014 14.1 0.0 1 1 5e-06 0.00027 13.1 0.0 19 143 49 188 46 193 0.69 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 2_22 - 359 RecA PF00154.16 323 1.7e-47 155.0 0.0 1 1 2.5e-49 2.7e-47 154.3 0.0 22 281 16 306 9 341 0.80 # 22306 # 23382 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 6_3 - 195 HTH_IclR PF09339.5 52 9.2e-07 21.5 0.1 1 1 8.3e-08 3e-06 19.8 0.1 15 40 14 39 13 40 0.95 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_IclR PF09339.5 52 0.00051 12.7 0.0 1 1 1.7e-05 0.00063 12.4 0.0 15 34 14 33 13 33 0.93 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_IclR PF09339.5 52 0.00051 12.7 0.0 1 1 1.7e-05 0.00063 12.4 0.0 15 34 14 33 13 33 0.93 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 2_14 - 1175 HHH_3 PF12836.2 65 0.00012 15.1 0.0 1 2 0.015 0.84 2.7 0.0 20 40 794 814 792 817 0.93 # 14351 # 17875 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 2_14 - 1175 HHH_3 PF12836.2 65 0.00012 15.1 0.0 2 2 0.00018 0.0097 8.9 0.0 19 48 900 930 895 932 0.82 # 14351 # 17875 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 3_15 - 341 HHH_3 PF12836.2 65 0.00017 14.6 0.0 1 1 7.7e-06 0.00042 13.3 0.0 14 57 212 255 210 257 0.95 # 14393 # 15415 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_28 - 213 ABC_tran PF00005.22 137 1.4e-14 47.6 0.1 1 1 1.1e-13 3.9e-12 39.7 0.1 1 134 39 152 39 155 0.83 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_4 - 639 ABC_tran PF00005.22 137 3.5e-07 23.6 3.5 1 2 0.00052 0.019 8.3 0.1 19 32 41 54 40 78 0.87 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_4 - 639 ABC_tran PF00005.22 137 3.5e-07 23.6 3.5 2 2 5.7e-06 0.00021 14.7 0.5 79 126 482 565 251 569 0.82 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_5 - 464 ABC_tran PF00005.22 137 0.0005 13.4 0.0 1 1 3.4e-05 0.0012 12.2 0.0 9 52 47 104 38 198 0.52 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 6_3 - 195 HTH_22 PF13309.1 64 0.00035 13.4 0.0 1 1 6.3e-06 0.00069 12.4 0.0 46 64 21 39 10 39 0.89 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_3 - 226 TIGR00095 TIGR00095 194 0.0003 13.2 0.0 1 2 0.001 0.11 4.8 0.0 123 138 19 34 7 79 0.75 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 226 TIGR00095 TIGR00095 194 0.0003 13.2 0.0 2 2 0.00032 0.035 6.4 0.0 53 83 164 196 154 209 0.76 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_5 - 464 DUF815 PF05673.8 250 5.4e-06 18.5 0.0 1 1 1.9e-07 1e-05 17.6 0.0 44 103 40 99 25 106 0.89 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 DUF815 PF05673.8 250 1.2e-05 17.4 0.0 1 1 3.3e-07 1.8e-05 16.8 0.0 32 103 30 99 7 106 0.83 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_3 - 195 HTH_AsnC-type PF13404.1 42 0.00031 13.4 0.0 1 1 6.9e-06 0.00075 12.1 0.0 18 36 18 36 13 40 0.91 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_15 - 341 HHH_5 PF14520.1 60 0.00016 14.9 0.0 1 1 4.5e-06 0.00049 13.3 0.0 6 49 213 253 210 257 0.91 # 14393 # 15415 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 3_5 - 464 Sigma54_activat PF00158.21 168 7.7e-05 15.2 0.0 1 1 2.7e-06 0.00015 14.3 0.0 11 67 37 96 33 100 0.79 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 Sigma54_activat PF00158.21 168 0.00014 14.4 0.1 1 2 1.9e-05 0.001 11.6 0.0 16 51 43 78 30 96 0.78 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 Sigma54_activat PF00158.21 168 0.00014 14.4 0.1 2 2 0.052 2.8 0.4 0.1 131 150 174 194 155 208 0.67 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_3 - 195 HTH_Tnp_Tc3_2 PF01498.13 72 0.00079 12.5 0.2 1 2 7e-05 0.0076 9.4 0.1 14 41 18 40 10 50 0.85 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 6_3 - 195 HTH_Tnp_Tc3_2 PF01498.13 72 0.00079 12.5 0.2 2 2 0.046 5 0.4 0.0 27 46 73 92 52 103 0.73 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_28 - 213 FtsK_SpoIIIE PF01580.13 205 0.00025 13.6 0.0 1 2 7.9e-06 0.00086 11.8 0.0 20 58 30 69 17 73 0.81 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 FtsK_SpoIIIE PF01580.13 205 0.00025 13.6 0.0 2 2 0.057 6.2 -0.8 0.0 175 200 159 184 90 197 0.72 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_3 - 195 HTH_40 PF14493.1 91 0.00011 15.5 0.0 1 1 1.5e-06 0.00017 14.9 0.0 4 35 8 39 5 72 0.90 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_31 - 520 Helicase_C PF00271.26 78 5.2e-14 45.0 0.0 1 1 1.5e-15 1.6e-13 43.4 0.0 2 78 387 463 386 463 0.97 # 30378 # 31937 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 6_3 - 195 HTH_38 PF13936.1 44 5.3e-12 38.2 0.5 1 1 6.8e-13 2.5e-11 36.1 0.2 6 41 3 38 2 40 0.94 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_38 PF13936.1 44 4.5e-11 35.2 0.1 1 1 1.3e-12 4.8e-11 35.2 0.1 6 36 3 33 2 33 0.96 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_38 PF13936.1 44 4.5e-11 35.2 0.1 1 1 1.3e-12 4.8e-11 35.2 0.1 6 36 3 33 2 33 0.96 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 2_24 - 277 TIGR01932 TIGR01932 318 1.4e-09 29.9 1.8 1 1 1.7e-11 1.9e-09 29.5 1.8 145 268 116 240 86 245 0.84 # 23677 # 24507 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_24 - 277 TIGR01933 TIGR01933 261 1.7e-05 17.1 1.8 1 1 2e-07 2.2e-05 16.7 1.8 81 201 111 234 82 251 0.80 # 23677 # 24507 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_28 - 213 MobB PF03205.9 140 3.8e-06 19.7 0.0 1 1 1.6e-07 8.9e-06 18.5 0.0 2 37 51 86 50 102 0.89 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 MobB PF03205.9 140 0.00079 12.2 0.0 1 1 3.1e-05 0.0017 11.1 0.0 3 41 52 88 50 98 0.88 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_21 - 33 HTH_8 PF02954.14 42 0.00038 13.1 0.1 1 1 1.3e-05 0.00046 12.8 0.1 25 34 24 33 10 33 0.88 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_8 PF02954.14 42 0.00038 13.1 0.1 1 1 1.3e-05 0.00046 12.8 0.1 25 34 24 33 10 33 0.88 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 6_3 - 195 HTH_8 PF02954.14 42 0.00059 12.4 0.1 1 1 3.9e-05 0.0014 11.2 0.1 25 37 24 36 14 40 0.87 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 6_3 - 195 TetR_N PF00440.18 47 0.00028 13.6 0.1 1 1 2.4e-05 0.00089 12.0 0.0 16 36 17 37 16 43 0.86 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 TetR_N PF00440.18 47 0.00044 13.0 0.0 1 1 1.6e-05 0.00056 12.6 0.0 16 32 17 33 15 33 0.89 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 TetR_N PF00440.18 47 0.00044 13.0 0.0 1 1 1.6e-05 0.00056 12.6 0.0 16 32 17 33 15 33 0.89 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_23 - 419 AAA_19 PF13245.1 76 0.0008 12.2 0.0 1 1 1.5e-05 0.0016 11.2 0.0 22 58 36 70 20 94 0.79 # 24797 # 26053 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 3_7 - 412 CbiA PF01656.18 195 4.8e-23 74.6 0.0 1 1 8.2e-25 9e-23 73.7 0.0 1 158 122 329 122 361 0.69 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_28 - 213 PRK PF00485.13 194 4.2e-05 16.2 0.0 1 1 6.8e-07 7.4e-05 15.4 0.0 1 37 51 87 51 106 0.79 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 KTI12 PF08433.5 270 5e-07 22.2 0.1 1 2 1e-07 1.1e-05 17.7 0.0 4 41 52 89 50 103 0.89 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 KTI12 PF08433.5 270 5e-07 22.2 0.1 2 2 0.0043 0.47 2.6 0.0 187 218 149 180 136 209 0.65 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_3 - 226 MethyltransfD12 PF02086.10 260 0.00029 13.4 0.0 1 2 0.013 1.5 1.2 0.0 176 188 19 31 12 90 0.83 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 226 MethyltransfD12 PF02086.10 260 0.00029 13.4 0.0 2 2 2.8e-05 0.003 10.0 0.0 20 46 163 189 148 197 0.79 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 6_3 - 195 Sigma70_r4_2 PF08281.7 54 4.1e-08 25.7 0.0 1 1 2.6e-09 9.6e-08 24.5 0.0 25 48 16 39 12 40 0.94 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 Sigma70_r4_2 PF08281.7 54 1.3e-05 17.6 0.0 1 1 4.4e-07 1.6e-05 17.4 0.0 25 42 16 33 12 33 0.93 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 Sigma70_r4_2 PF08281.7 54 1.3e-05 17.6 0.0 1 1 4.4e-07 1.6e-05 17.4 0.0 25 42 16 33 12 33 0.93 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 2_31 - 355 Rep_3 PF01051.16 222 7.6e-40 129.8 0.1 1 1 9.8e-42 1.1e-39 129.4 0.1 3 222 27 285 25 285 0.95 # 27103 # 28167 # -1 # ID=2_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 6_3 - 195 rve PF00665.21 120 3.5e-13 42.8 0.0 1 1 6.5e-15 7.1e-13 41.8 0.0 3 79 118 190 117 194 0.94 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 6_3 - 195 Terminase_5 PF06056.7 58 0.00033 13.3 0.0 1 1 6.4e-06 0.0007 12.2 0.0 9 36 13 40 9 44 0.85 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 4_4 - 639 AAA_23 PF13476.1 202 6.7e-19 62.0 0.0 1 1 6.5e-20 7e-18 58.7 0.0 1 177 5 245 5 510 0.78 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_5 - 464 AAA_24 PF13479.1 213 6e-06 19.0 0.1 1 1 1.5e-07 1.7e-05 17.5 0.1 6 33 52 87 49 172 0.80 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_3 - 226 Methyltransf_26 PF13659.1 117 3.4e-13 42.7 0.1 1 2 1.9e-08 2.1e-06 20.8 0.0 53 114 3 71 2 74 0.77 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 226 Methyltransf_26 PF13659.1 117 3.4e-13 42.7 0.1 2 2 4e-08 4.4e-06 19.8 0.0 4 44 167 206 164 220 0.83 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_28 - 213 Zeta_toxin PF06414.7 201 7.8e-06 18.1 0.0 1 2 2.2e-07 2.4e-05 16.5 0.0 14 52 47 85 37 106 0.80 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 Zeta_toxin PF06414.7 201 7.8e-06 18.1 0.0 2 2 0.062 6.7 -1.3 0.0 170 185 155 170 122 201 0.61 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 AAA_30 PF13604.1 196 3.3e-05 16.5 0.0 1 1 2.6e-06 0.00014 14.5 0.0 4 53 35 84 34 181 0.65 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 AAA_30 PF13604.1 196 5.1e-05 15.9 0.8 1 1 3.9e-06 0.00021 13.9 0.7 17 50 48 81 42 183 0.83 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_4 - 639 SMC_N PF02463.14 220 4e-15 48.6 0.4 1 1 1.3e-16 6.9e-15 47.8 0.4 32 200 41 618 3 635 0.91 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_28 - 213 SMC_N PF02463.14 220 3.1e-05 16.3 0.6 1 2 0.00081 0.044 6.0 0.1 25 41 50 66 37 73 0.81 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 SMC_N PF02463.14 220 3.1e-05 16.3 0.6 2 2 9.8e-05 0.0053 9.0 0.0 135 204 117 192 67 208 0.64 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_3 - 195 GerE PF00196.14 58 1e-06 21.1 0.0 1 1 5e-08 1.8e-06 20.3 0.0 17 39 16 38 8 40 0.89 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 GerE PF00196.14 58 1.3e-05 17.5 0.1 1 1 3.8e-07 1.4e-05 17.4 0.1 17 34 16 33 6 33 0.86 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 GerE PF00196.14 58 1.3e-05 17.5 0.1 1 1 3.8e-07 1.4e-05 17.4 0.1 17 34 16 33 6 33 0.86 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 3_5 - 464 Bac_DnaA PF00308.13 219 2.1e-05 17.2 0.0 1 2 7.2e-06 0.00079 12.1 0.0 37 82 52 97 40 113 0.75 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 Bac_DnaA PF00308.13 219 2.1e-05 17.2 0.0 2 2 0.0062 0.67 2.5 0.0 79 131 141 193 118 260 0.68 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_7 - 412 MipZ PF09140.6 261 6.5e-06 18.4 0.4 1 2 3.3e-05 0.0036 9.4 0.1 1 50 120 174 120 200 0.75 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 3_7 - 412 MipZ PF09140.6 261 6.5e-06 18.4 0.4 2 2 0.00022 0.024 6.7 0.0 90 135 247 292 237 297 0.89 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 3_3 - 226 UPF0020 PF01170.13 180 1.9e-06 20.5 0.0 1 2 8.8e-05 0.0096 8.5 0.0 102 122 16 36 3 88 0.72 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 226 UPF0020 PF01170.13 180 1.9e-06 20.5 0.0 2 2 2.9e-05 0.0032 10.1 0.0 27 54 162 188 158 216 0.72 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 2_5 - 254 GyrI-like PF06445.10 155 1.1e-12 41.2 1.0 1 1 2.9e-14 3.1e-12 39.8 1.0 3 154 80 221 78 222 0.80 # 2515 # 3276 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.339 3_16 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00019 14.0 0.1 1 3 0.056 6.1 -0.7 0.1 125 187 93 150 78 163 0.64 # 15884 # 17092 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 3_16 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00019 14.0 0.1 2 3 0.00052 0.057 6.0 0.0 31 82 201 251 192 266 0.85 # 15884 # 17092 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 3_16 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00019 14.0 0.1 3 3 0.0016 0.18 4.3 0.1 161 232 277 348 251 355 0.59 # 15884 # 17092 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 4_4 - 639 AAA_21 PF13304.1 303 2.8e-05 17.2 0.0 1 2 0.00046 0.051 6.5 0.0 8 22 42 56 41 97 0.88 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_4 - 639 AAA_21 PF13304.1 303 2.8e-05 17.2 0.0 2 2 0.00011 0.012 8.5 0.0 204 297 539 615 441 616 0.82 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 6_3 - 195 Sigma70_r4 PF04545.11 50 0.00022 13.6 0.2 1 2 9.3e-06 0.001 11.5 0.1 19 39 16 36 7 39 0.89 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 6_3 - 195 Sigma70_r4 PF04545.11 50 0.00022 13.6 0.2 2 2 0.094 10 -1.4 0.0 34 44 61 71 53 71 0.71 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_10 - 1526 RRF PF01765.14 165 0.031 6.8 13.0 1 2 0.0045 0.49 2.9 0.0 98 151 270 323 265 327 0.94 # 11892 # 16469 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 1_10 - 1526 RRF PF01765.14 165 0.031 6.8 13.0 2 2 4.9e-05 0.0054 9.2 2.2 108 152 748 793 723 804 0.71 # 11892 # 16469 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 6_3 - 195 DUF2316 PF10078.4 89 0.00019 14.5 0.0 1 1 3.7e-06 0.00041 13.4 0.0 20 82 14 85 5 91 0.82 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_5 - 464 AAA PF00004.24 132 3.2e-08 26.9 0.0 1 1 1.2e-09 1.3e-07 25.0 0.0 2 114 53 208 52 226 0.67 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 6_3 - 195 KorB PF08535.5 93 0.00022 14.4 0.0 1 1 1e-05 0.0011 12.1 0.0 2 30 16 44 15 108 0.74 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_25 - 89 LexA_DNA_bind PF01726.11 65 0.00065 12.3 0.2 1 1 2.1e-05 0.0023 10.6 0.2 3 64 2 63 1 64 0.84 # 26893 # 27159 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.528 3_3 - 226 N6_N4_Mtase PF01555.13 231 3.2e-37 121.2 0.0 1 1 3.1e-37 3.4e-35 114.6 0.0 1 228 21 200 21 203 0.91 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 1_28 - 213 cobW PF02492.14 178 0.00044 12.7 0.1 1 1 6.9e-06 0.00075 12.0 0.1 2 47 51 95 50 114 0.77 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 AAA_16 PF13191.1 185 4.1e-17 55.8 0.0 1 1 1.3e-18 7.1e-17 55.0 0.0 1 179 30 190 30 198 0.80 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 AAA_16 PF13191.1 185 2e-08 27.4 0.0 1 1 5.1e-10 2.8e-08 27.0 0.0 12 87 38 107 29 182 0.76 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 AAA_22 PF13401.1 131 6.2e-09 29.1 0.1 1 1 4e-10 2.2e-08 27.4 0.1 5 123 50 201 46 209 0.74 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 AAA_22 PF13401.1 131 2.9e-07 23.7 0.0 1 1 1.3e-08 7.2e-07 22.5 0.0 3 86 48 176 42 195 0.73 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 TIGR00362 TIGR00362 437 0.00067 11.4 0.0 1 1 1.5e-05 0.0016 10.2 0.0 140 165 52 77 39 106 0.80 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 2_5 - 254 HTH_AraC PF00165.18 42 4.4e-13 41.8 0.4 1 1 7e-15 7.6e-13 41.0 0.4 2 41 20 57 19 58 0.95 # 2515 # 3276 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.339 6_3 - 195 NUMOD1 PF07453.8 37 0.00015 14.7 0.1 1 1 2.4e-06 0.00026 13.9 0.1 20 37 21 38 19 38 0.91 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_28 - 213 AAA_29 PF13555.1 62 9.3e-08 24.6 0.0 1 1 4.1e-09 2.3e-07 23.4 0.0 8 40 35 66 32 71 0.91 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_4 - 639 AAA_29 PF13555.1 62 8.4e-05 15.1 0.1 1 1 9.4e-06 0.00051 12.6 0.0 31 51 41 61 4 66 0.81 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 6_3 - 195 HTH_3 PF01381.17 55 4.5e-07 22.7 0.1 1 1 3.1e-08 8.5e-07 21.8 0.1 7 37 15 45 8 48 0.91 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_3 PF01381.17 55 9.1e-05 15.3 0.0 1 1 3.5e-06 9.6e-05 15.3 0.0 7 25 15 33 7 33 0.87 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_3 PF01381.17 55 9.1e-05 15.3 0.0 1 1 3.5e-06 9.6e-05 15.3 0.0 7 25 15 33 7 33 0.87 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 3_10 - 207 HTH_3 PF01381.17 55 0.00014 14.7 2.2 1 1 6.7e-06 0.00018 14.4 0.1 1 28 172 199 172 202 0.93 # 7324 # 7944 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 6_3 - 195 HTH_23 PF13384.1 50 4.5e-09 28.8 0.3 1 1 5.6e-10 1.2e-08 27.5 0.0 9 40 9 40 2 43 0.90 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_23 PF13384.1 50 1.9e-07 23.7 0.0 1 1 8.7e-09 1.9e-07 23.7 0.0 8 33 8 33 1 33 0.89 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_23 PF13384.1 50 1.9e-07 23.7 0.0 1 1 8.7e-09 1.9e-07 23.7 0.0 8 33 8 33 1 33 0.89 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 3_10 - 207 HTH_23 PF13384.1 50 9.7e-06 18.2 0.3 1 1 1.1e-06 2.4e-05 17.0 0.3 10 40 174 203 162 206 0.76 # 7324 # 7944 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 5_5 - 670 HTH_23 PF13384.1 50 0.00051 12.8 0.0 1 1 0.00013 0.0028 10.4 0.0 13 40 150 177 144 183 0.89 # 2879 # 4888 # 1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 3_7 - 412 Fer4_NifH PF00142.13 273 6.9e-06 18.4 0.0 1 1 1.2e-07 1.3e-05 17.5 0.0 7 71 127 196 122 205 0.79 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 6_3 - 195 HTH_7 PF02796.10 45 1.2e-11 37.4 0.3 1 1 9e-13 3.3e-11 36.0 0.3 13 44 9 40 5 41 0.93 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_7 PF02796.10 45 1.2e-08 27.8 0.1 1 1 3.5e-10 1.3e-08 27.7 0.1 13 37 9 33 4 33 0.93 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_7 PF02796.10 45 1.2e-08 27.8 0.1 1 1 3.5e-10 1.3e-08 27.7 0.1 13 37 9 33 4 33 0.93 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 6_3 - 195 HTH_19 PF12844.2 64 7.4e-06 19.0 0.0 1 1 2.1e-07 1.2e-05 18.4 0.0 7 52 12 58 11 70 0.83 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_10 - 129 HTH_19 PF12844.2 64 9.5e-05 15.5 0.0 1 1 3.1e-06 0.00017 14.7 0.0 14 62 27 76 21 78 0.91 # 9501 # 9887 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 3_5 - 464 NB-ARC PF00931.17 287 0.00044 12.2 0.0 1 1 8.9e-06 0.00097 11.0 0.0 20 160 50 226 34 287 0.66 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 6_3 - 195 HTH_29 PF13551.1 112 1.8e-06 21.1 0.2 1 1 9.1e-08 3.3e-06 20.3 0.2 6 35 12 40 8 103 0.70 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_29 PF13551.1 112 0.00014 15.1 0.1 1 1 4.2e-06 0.00015 14.9 0.1 5 28 11 33 8 33 0.89 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_29 PF13551.1 112 0.00014 15.1 0.1 1 1 4.2e-06 0.00015 14.9 0.1 5 28 11 33 8 33 0.89 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 2_20 - 315 TIGR00593 TIGR00593 890 7.1e-37 119.8 0.0 1 1 7.5e-39 8.2e-37 119.6 0.0 3 267 5 276 3 306 0.82 # 21093 # 22037 # 1 # ID=2_20;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_5 - 464 Arch_ATPase PF01637.13 234 1.5e-12 40.7 0.0 1 1 3.9e-14 2.1e-12 40.2 0.0 1 230 31 266 31 270 0.63 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 Arch_ATPase PF01637.13 234 0.00027 13.7 0.0 1 1 6.1e-06 0.00033 13.4 0.0 18 68 47 97 41 177 0.84 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_23 - 419 PhoH PF02562.11 205 0.00033 12.9 0.0 1 2 2.7e-05 0.003 9.8 0.0 31 138 36 136 12 146 0.65 # 24797 # 26053 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_23 - 419 PhoH PF02562.11 205 0.00033 12.9 0.0 2 2 0.039 4.3 -0.5 0.0 65 106 351 392 340 396 0.78 # 24797 # 26053 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 2_13 - 412 AAA_5 PF07728.9 139 1.4e-17 56.8 0.0 1 1 4.5e-19 2.4e-17 56.0 0.0 4 126 173 293 172 309 0.92 # 12935 # 14170 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.527 3_5 - 464 AAA_5 PF07728.9 139 3.8e-06 19.7 0.0 1 1 6.2e-07 3.4e-05 16.6 0.0 1 47 51 100 51 194 0.73 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_31 - 520 ResIII PF04851.10 184 9.3e-18 57.7 0.0 1 1 1.6e-19 1.7e-17 56.8 0.0 26 183 112 268 97 269 0.82 # 30378 # 31937 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 1_31 - 520 SNF2_N PF00176.18 299 2.3e-05 16.3 0.0 1 1 3.5e-07 3.8e-05 15.6 0.0 106 182 186 277 169 285 0.81 # 30378 # 31937 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 1_28 - 213 AAA_18 PF13238.1 129 2.2e-06 21.1 0.0 1 1 3.6e-08 3.9e-06 20.2 0.0 1 39 52 90 52 106 0.77 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 AAA_32 PF13654.1 509 0.00027 12.7 0.0 1 1 4.1e-06 0.00045 11.9 0.0 8 56 29 75 23 82 0.82 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_3 - 226 Methyltransf_15 PF09445.5 164 0.0012 11.5 0.0 1 2 0.035 3.8 0.1 0.0 53 79 4 29 2 33 0.90 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 226 Methyltransf_15 PF09445.5 164 0.0012 11.5 0.0 2 2 7.1e-05 0.0077 8.8 0.0 3 31 166 194 164 207 0.86 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 6_3 - 195 HTH_Tnp_IS1 PF12759.2 46 0.00066 12.2 0.0 1 1 1.2e-05 0.0013 11.3 0.0 21 43 17 39 9 42 0.88 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_28 - 213 DUF258 PF03193.11 161 1.2e-05 17.6 0.0 1 1 1.9e-07 2.1e-05 16.8 0.0 25 85 38 111 13 119 0.76 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 AAA_35 PF14516.1 331 9.3e-08 24.0 0.0 1 2 7.5e-06 0.00082 11.0 0.0 22 141 40 174 31 192 0.63 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 AAA_35 PF14516.1 331 9.3e-08 24.0 0.0 2 2 1.7e-05 0.0018 9.9 0.0 214 292 245 346 230 358 0.84 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 6_3 - 195 HTH_28 PF13518.1 52 2.8e-08 26.7 0.1 1 1 2.2e-09 6e-08 25.7 0.1 7 34 12 39 8 40 0.89 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_28 PF13518.1 52 9e-07 21.9 0.1 1 1 3.5e-08 9.4e-07 21.8 0.1 7 28 12 33 8 33 0.88 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_28 PF13518.1 52 9e-07 21.9 0.1 1 1 3.5e-08 9.4e-07 21.8 0.1 7 28 12 33 8 33 0.88 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 3_10 - 207 HTH_28 PF13518.1 52 2.9e-05 17.1 0.1 1 1 2.8e-06 7.7e-05 15.7 0.1 8 37 176 205 167 206 0.88 # 7324 # 7944 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 3_6 - 324 Ribosomal_S18 PF01084.15 54 0.0072 9.3 5.1 1 3 0.061 6.7 -0.2 0.0 26 46 62 82 58 85 0.87 # 4096 # 5067 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_6 - 324 Ribosomal_S18 PF01084.15 54 0.0072 9.3 5.1 2 3 0.0021 0.23 4.5 0.1 39 53 132 146 127 147 0.91 # 4096 # 5067 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 3_6 - 324 Ribosomal_S18 PF01084.15 54 0.0072 9.3 5.1 3 3 0.002 0.21 4.6 0.0 32 47 298 313 295 313 0.90 # 4096 # 5067 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 6_3 - 195 HTH_24 PF13412.1 48 2.2e-07 23.2 0.1 1 1 1.1e-08 3.9e-07 22.5 0.1 10 40 11 40 10 43 0.89 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_24 PF13412.1 48 2.5e-05 16.7 0.1 1 1 7.8e-07 2.9e-05 16.5 0.1 10 33 11 33 10 33 0.87 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_24 PF13412.1 48 2.5e-05 16.7 0.1 1 1 7.8e-07 2.9e-05 16.5 0.1 10 33 11 33 10 33 0.87 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_28 - 213 Sigma54_activ_2 PF14532.1 138 1.6e-05 18.0 0.0 1 1 2.3e-07 2.6e-05 17.4 0.0 10 95 38 143 33 192 0.72 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_5 - 254 HTH_18 PF12833.2 81 1.1e-14 47.4 0.8 1 1 2e-16 2.1e-14 46.5 0.6 22 79 1 57 1 58 0.96 # 2515 # 3276 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.339 6_3 - 195 HTH_30 PF13556.1 59 4.1e-05 16.2 0.0 1 1 2.7e-06 9.8e-05 15.0 0.0 10 34 15 39 10 43 0.86 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_30 PF13556.1 59 0.00017 14.2 0.0 1 1 4.7e-06 0.00017 14.2 0.0 10 28 15 33 5 33 0.91 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_30 PF13556.1 59 0.00017 14.2 0.0 1 1 4.7e-06 0.00017 14.2 0.0 10 28 15 33 5 33 0.91 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_23 - 419 Terminase_GpA PF05876.7 557 2.9e-05 15.5 0.0 1 1 4.5e-07 4.9e-05 14.8 0.0 34 149 25 132 10 136 0.78 # 24797 # 26053 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 6_3 - 195 HTH_10 PF04967.7 53 0.00012 14.7 0.0 1 1 2.1e-06 0.00023 13.8 0.0 24 45 18 39 15 43 0.89 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_22 - 359 Rad51 PF08423.6 256 4.5e-05 15.4 0.0 1 2 5.7e-06 0.00062 11.7 0.0 32 84 45 91 27 135 0.86 # 22306 # 23382 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 2_22 - 359 Rad51 PF08423.6 256 4.5e-05 15.4 0.0 2 2 0.0078 0.85 1.4 0.0 169 207 195 230 161 262 0.78 # 22306 # 23382 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_31 - 520 DEAD PF00270.24 169 1.8e-13 43.3 0.1 1 2 3.1e-13 1.1e-11 37.5 0.0 2 163 99 268 98 275 0.73 # 30378 # 31937 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 1_31 - 520 DEAD PF00270.24 169 1.8e-13 43.3 0.1 2 2 0.014 0.52 2.8 0.0 64 102 384 425 376 428 0.75 # 30378 # 31937 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.515 3_5 - 464 DEAD PF00270.24 169 2.8e-06 19.9 0.1 1 1 2.7e-07 9.8e-06 18.2 0.1 2 157 35 198 34 201 0.65 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_23 - 419 DEAD PF00270.24 169 0.00023 13.7 0.0 1 1 2.2e-05 0.00081 11.9 0.0 25 132 35 130 14 154 0.76 # 24797 # 26053 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 3_5 - 464 Miro PF08477.8 119 8.8e-05 16.1 0.2 1 1 2.5e-06 0.00028 14.5 0.1 1 26 51 87 51 181 0.59 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_10 - 207 HTH_31 PF13560.1 64 1.1e-05 18.6 0.5 1 1 3.2e-07 1.1e-05 18.6 0.5 5 38 171 204 170 206 0.92 # 7324 # 7944 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 6_3 - 195 HTH_31 PF13560.1 64 1.2e-05 18.5 0.0 1 1 8.5e-07 3.1e-05 17.2 0.0 12 54 15 60 13 61 0.85 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_10 - 129 HTH_31 PF13560.1 64 0.0002 14.6 0.0 1 1 1.1e-05 0.00041 13.6 0.0 16 59 27 70 25 81 0.89 # 9501 # 9887 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 3_5 - 464 DUF2075 PF09848.4 352 3.2e-05 16.0 0.0 1 1 1.7e-06 9.2e-05 14.5 0.0 3 133 51 208 49 245 0.67 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 DUF2075 PF09848.4 352 6.7e-05 15.0 0.2 1 1 3e-06 0.00016 13.7 0.0 3 28 51 76 49 109 0.80 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_23 - 419 Terminase_6 PF03237.10 384 1.2e-20 66.5 0.0 1 1 1.3e-22 1.4e-20 66.3 0.0 4 382 31 403 28 405 0.89 # 24797 # 26053 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_28 - 213 T2SE PF00437.15 272 0.00018 13.5 0.1 1 1 2.9e-06 0.00031 12.7 0.1 116 164 37 85 4 109 0.79 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_10 - 207 HTH_6 PF01418.12 77 0.00015 14.6 0.0 1 1 3e-06 0.00033 13.5 0.0 34 57 180 203 170 205 0.88 # 7324 # 7944 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 3_7 - 412 Methyltransf_24 PF13578.1 106 0.0003 14.7 0.1 1 1 1.9e-05 0.0021 12.0 0.1 4 79 130 265 127 281 0.63 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 3_5 - 464 NACHT PF05729.7 166 1.2e-05 18.0 0.0 1 2 8.6e-06 0.00047 12.9 0.0 1 28 50 77 50 103 0.88 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 NACHT PF05729.7 166 1.2e-05 18.0 0.0 2 2 0.011 0.6 2.8 0.0 79 112 158 188 123 220 0.79 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 NACHT PF05729.7 166 2.7e-05 16.9 0.0 1 1 1.1e-06 6.1e-05 15.8 0.0 2 38 51 88 50 112 0.79 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 UPF0079 PF02367.12 123 3.6e-06 19.7 0.0 1 1 6.3e-08 6.9e-06 18.8 0.0 9 47 43 82 36 96 0.85 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 AAA_17 PF13207.1 121 5.7e-07 23.4 0.0 1 1 8.1e-09 8.8e-07 22.8 0.0 1 33 51 86 51 178 0.81 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_16 - 403 Transposase_mut PF00872.13 381 5.6e-121 396.6 0.1 1 1 5.8e-123 6.3e-121 396.4 0.1 9 379 10 377 1 379 0.97 # 15884 # 17092 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_28 - 213 TIGR02211 TIGR02211 221 3.3e-16 52.2 0.3 1 2 2e-09 1.1e-07 24.3 0.0 15 51 33 69 18 91 0.89 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 TIGR02211 TIGR02211 221 3.3e-16 52.2 0.3 2 2 4.8e-10 2.6e-08 26.3 0.1 119 215 102 200 92 204 0.86 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_4 - 639 TIGR02211 TIGR02211 221 0.00042 12.6 0.2 1 1 4.7e-05 0.0025 10.0 0.0 139 217 545 633 518 636 0.79 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_22 - 359 AAA_25 PF13481.1 194 4.4e-07 22.5 0.0 1 1 7.4e-08 2e-06 20.3 0.0 13 157 27 157 18 216 0.68 # 22306 # 23382 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 4_4 - 639 AAA_25 PF13481.1 194 6.2e-05 15.5 0.3 1 1 1.3e-05 0.00034 13.1 0.0 39 139 39 137 29 143 0.71 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_28 - 213 AAA_25 PF13481.1 194 0.00021 13.8 0.1 1 2 0.0001 0.0027 10.1 0.0 18 50 30 66 15 88 0.76 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 AAA_25 PF13481.1 194 0.00021 13.8 0.1 2 2 0.046 1.3 1.4 0.1 165 185 162 182 144 186 0.80 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 AAA_25 PF13481.1 194 0.00069 12.0 0.1 1 1 0.00014 0.0037 9.7 0.1 31 59 47 74 24 188 0.73 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 AAA_15 PF13175.1 415 6.6e-05 15.1 0.0 1 1 7.1e-07 7.8e-05 14.8 0.0 14 56 41 97 10 143 0.79 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 RuvB_N PF05496.7 234 7.6e-05 14.8 0.0 1 3 2.1e-05 0.0023 10.0 0.0 51 75 50 74 32 104 0.85 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 RuvB_N PF05496.7 234 7.6e-05 14.8 0.0 2 3 0.096 10 -2.0 0.0 184 215 233 264 217 274 0.84 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 RuvB_N PF05496.7 234 7.6e-05 14.8 0.0 3 3 0.0092 1 1.3 0.0 33 61 305 333 293 366 0.78 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 AAA_14 PF13173.1 128 1.5e-07 24.4 0.0 1 2 4.9e-06 0.00027 13.9 0.0 3 48 50 96 48 117 0.75 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 AAA_14 PF13173.1 128 1.5e-07 24.4 0.0 2 2 0.00032 0.018 8.0 0.0 50 97 150 202 127 222 0.80 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 AAA_14 PF13173.1 128 0.00047 13.1 0.0 1 1 2.3e-05 0.0013 11.7 0.0 2 44 49 90 48 122 0.74 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_7 - 412 VirC1 PF07015.6 231 0.00079 11.5 0.0 1 2 0.015 1.7 0.7 0.0 4 26 122 144 120 151 0.83 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 3_7 - 412 VirC1 PF07015.6 231 0.00079 11.5 0.0 2 2 8.4e-05 0.0092 8.1 0.0 84 154 256 332 243 370 0.69 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 3_15 - 341 Transposase_20 PF02371.11 87 1.8e-30 98.0 0.2 1 1 3.2e-32 3.5e-30 97.1 0.2 2 80 212 291 211 298 0.92 # 14393 # 15415 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.517 6_3 - 195 HTH_Tnp_ISL3 PF13542.1 52 7.6e-06 18.1 0.2 1 1 1.4e-06 3.8e-05 15.9 0.0 20 49 10 39 2 40 0.82 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_10 - 207 HTH_Tnp_ISL3 PF13542.1 52 0.00033 12.9 0.1 1 1 3.1e-05 0.00085 11.6 0.1 22 48 176 201 174 204 0.83 # 7324 # 7944 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 3_21 - 33 HTH_Tnp_ISL3 PF13542.1 52 0.00037 12.7 0.0 1 1 1.4e-05 0.00038 12.7 0.0 18 43 8 33 2 33 0.79 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_Tnp_ISL3 PF13542.1 52 0.00037 12.7 0.0 1 1 1.4e-05 0.00038 12.7 0.0 18 43 8 33 2 33 0.79 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_32 - 93 GrpE PF01025.14 166 0.00075 12.1 3.3 1 1 7.9e-06 0.00086 11.9 3.3 34 108 12 90 2 92 0.77 # 31940 # 32218 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 1_28 - 213 AAA_33 PF13671.1 143 0.00028 13.8 0.1 1 1 4.3e-06 0.00046 13.1 0.1 1 33 51 94 51 208 0.70 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_3 - 195 CENP-B_N PF04218.8 53 3.4e-05 16.3 0.1 1 1 1.7e-06 6.3e-05 15.4 0.1 20 47 15 42 2 43 0.83 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 CENP-B_N PF04218.8 53 0.00036 13.0 0.1 1 1 1e-05 0.00036 13.0 0.1 14 38 9 33 1 33 0.75 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 CENP-B_N PF04218.8 53 0.00036 13.0 0.1 1 1 1e-05 0.00036 13.0 0.1 14 38 9 33 1 33 0.75 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_28 - 213 ArgK PF03308.11 267 1.7e-05 16.7 0.0 1 1 2.7e-07 2.9e-05 15.9 0.0 26 63 46 83 15 85 0.87 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_4 - 639 SbcCD_C PF13558.1 90 1.2e-07 24.7 0.1 1 1 2.6e-09 2.8e-07 23.5 0.1 12 89 532 601 524 602 0.86 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_14 - 1175 HHH_6 PF14579.1 90 2.9e-16 52.4 0.0 1 1 9.6e-18 1e-15 50.6 0.0 1 84 866 958 866 961 0.92 # 14351 # 17875 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 3_5 - 464 RNA_helicase PF00910.17 107 4.4e-05 16.7 0.0 1 2 5e-05 0.0027 10.9 0.0 1 26 52 76 52 106 0.80 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 RNA_helicase PF00910.17 107 4.4e-05 16.7 0.0 2 2 0.016 0.86 2.9 0.0 45 65 156 176 137 195 0.82 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 RNA_helicase PF00910.17 107 7.9e-05 15.9 0.1 1 1 8.1e-06 0.00044 13.5 0.1 1 26 52 77 52 107 0.76 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_3 - 72 HTH_45 PF14947.1 77 0.00011 15.1 0.2 1 1 2.2e-06 0.00023 14.0 0.0 43 71 33 66 28 71 0.73 # 1334 # 1549 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.481 3_5 - 464 AAA_2 PF07724.9 171 0.00023 14.1 0.0 1 1 1.1e-05 0.0011 11.9 0.0 7 83 53 175 48 193 0.84 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 APS_kinase PF01583.15 157 2.8e-07 23.3 0.0 1 1 5.1e-09 5.6e-07 22.4 0.0 1 40 48 87 48 105 0.84 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_5 - 464 NTPase_1 PF03266.10 168 1.7e-05 17.6 0.1 1 2 7.3e-05 0.004 9.9 0.0 1 26 51 76 51 84 0.91 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 464 NTPase_1 PF03266.10 168 1.7e-05 17.6 0.1 2 2 0.0018 0.098 5.4 0.0 62 103 129 168 114 197 0.82 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_28 - 213 NTPase_1 PF03266.10 168 4.4e-05 16.3 0.1 1 2 4.7e-06 0.00026 13.8 0.0 2 31 52 81 51 102 0.95 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 NTPase_1 PF03266.10 168 4.4e-05 16.3 0.1 2 2 0.077 4.2 0.1 0.0 94 136 143 189 124 210 0.55 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_21 - 33 GcrA PF07750.6 162 1.5e-05 18.3 0.0 1 1 4.3e-07 1.5e-05 18.2 0.0 6 34 5 32 2 33 0.92 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 GcrA PF07750.6 162 1.5e-05 18.3 0.0 1 1 4.3e-07 1.5e-05 18.2 0.0 6 34 5 32 2 33 0.92 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 6_3 - 195 GcrA PF07750.6 162 6.4e-05 16.2 0.0 1 1 2.5e-06 9.1e-05 15.7 0.0 6 36 5 34 2 86 0.93 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 6_3 - 195 HTH_26 PF13443.1 63 8.1e-07 22.3 0.0 1 1 4.2e-08 1.5e-06 21.4 0.0 4 41 11 48 10 58 0.90 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_26 PF13443.1 63 0.00013 15.2 0.1 1 1 4.5e-06 0.00016 14.9 0.1 4 26 11 33 10 33 0.95 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_26 PF13443.1 63 0.00013 15.2 0.1 1 1 4.5e-06 0.00016 14.9 0.1 4 26 11 33 10 33 0.95 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_28 - 213 KAP_NTPase PF07693.9 325 2.4e-07 23.0 0.0 1 1 2.7e-09 2.9e-07 22.7 0.0 17 115 46 142 37 202 0.69 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_3 - 195 HTH_17 PF12728.2 51 0.00045 13.5 0.1 1 1 2.2e-05 0.0012 12.2 0.1 6 26 22 43 18 87 0.88 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_16 - 188 HTH_17 PF12728.2 51 0.00093 12.5 0.0 1 1 3.1e-05 0.0017 11.7 0.0 5 50 83 135 80 136 0.82 # 18345 # 18908 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 6_3 - 195 HTH_11 PF08279.7 55 6.2e-07 22.1 0.1 1 1 4.8e-08 1.7e-06 20.6 0.1 7 37 11 39 5 40 0.80 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_21 - 33 HTH_11 PF08279.7 55 3.1e-05 16.6 0.1 1 1 9.3e-07 3.4e-05 16.5 0.1 7 31 11 33 5 33 0.76 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_11 PF08279.7 55 3.1e-05 16.6 0.1 1 1 9.3e-07 3.4e-05 16.5 0.1 7 31 11 33 5 33 0.76 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 1_25 - 89 MarR_2 PF12802.2 62 0.00033 13.4 0.0 1 1 5.4e-06 0.00059 12.6 0.0 34 54 38 58 36 72 0.80 # 26893 # 27159 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.528 1_28 - 213 PIF1 PF05970.9 364 4.3e-05 15.6 0.0 1 1 6.3e-07 6.9e-05 14.9 0.0 18 55 45 82 31 85 0.86 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_3 - 195 TrmB PF01978.14 68 0.00013 14.7 0.0 1 1 2.6e-06 0.00028 13.6 0.0 16 44 11 39 10 40 0.93 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_5 - 464 Helicase_RecD PF05127.9 177 4.5e-05 16.2 0.0 1 1 7.2e-07 7.9e-05 15.4 0.0 2 98 54 168 53 175 0.69 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_10 - 207 LacI PF00356.16 46 1.7e-06 20.7 0.0 1 1 4.7e-08 5.2e-06 19.1 0.0 2 22 183 203 182 206 0.87 # 7324 # 7944 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 6_3 - 195 DUF1670 PF07900.6 220 0.00053 12.2 0.1 1 1 8e-06 0.00088 11.5 0.1 189 219 9 39 4 40 0.92 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_28 - 213 AAA_10 PF12846.2 304 2.5e-06 20.1 0.4 1 2 2.1e-06 0.00011 14.7 0.0 6 47 54 97 51 107 0.82 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_28 - 213 AAA_10 PF12846.2 304 2.5e-06 20.1 0.4 2 2 0.0038 0.21 4.0 0.1 216 260 140 184 95 192 0.78 # 28312 # 28950 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 4_4 - 639 AAA_10 PF12846.2 304 0.01 8.2 6.5 1 2 0.00084 0.046 6.1 1.3 9 24 41 59 39 281 0.88 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 4_4 - 639 AAA_10 PF12846.2 304 0.01 8.2 6.5 2 2 0.0027 0.15 4.4 0.3 97 262 465 617 380 629 0.75 # 3039 # 4955 # 1 # ID=4_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 6_3 - 195 HTH_20 PF12840.2 61 0.00019 14.3 0.0 1 1 1.5e-05 0.00041 13.2 0.0 19 46 13 39 10 40 0.89 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_24 - 214 HTH_20 PF12840.2 61 0.00057 12.7 0.0 1 1 8.7e-05 0.0024 10.8 0.0 21 47 25 51 11 58 0.89 # 26056 # 26697 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 3_21 - 33 HTH_20 PF12840.2 61 0.0007 12.5 0.0 1 1 2.9e-05 0.0008 12.3 0.0 19 40 13 33 10 33 0.90 # 19855 # 19953 # 1 # ID=3_21;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 5_6 - 33 HTH_20 PF12840.2 61 0.0007 12.5 0.0 1 1 2.9e-05 0.0008 12.3 0.0 19 40 13 33 10 33 0.90 # 5012 # 5110 # 1 # ID=5_6;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.485 3_3 - 226 Methyltransf_11 PF08241.7 95 0.00063 13.3 0.0 1 3 0.045 4.9 0.8 0.0 46 65 4 25 2 28 0.77 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 226 Methyltransf_11 PF08241.7 95 0.00063 13.3 0.0 2 3 0.0023 0.25 5.0 0.0 78 93 53 68 46 70 0.85 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 226 Methyltransf_11 PF08241.7 95 0.00063 13.3 0.0 3 3 0.0066 0.72 3.5 0.0 5 41 172 207 168 223 0.74 # 780 # 1457 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.581 3_7 - 412 ArsA_ATPase PF02374.10 305 0.00034 12.7 0.0 1 1 7.9e-06 0.00086 11.4 0.0 4 136 123 265 120 267 0.70 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 3_7 - 412 AAA_31 PF13614.1 157 1.3e-07 24.7 0.0 1 2 1.6e-05 0.0018 11.3 0.0 2 90 121 214 120 229 0.80 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 3_7 - 412 AAA_31 PF13614.1 157 1.3e-07 24.7 0.0 2 2 2.7e-05 0.003 10.5 0.0 109 148 247 285 231 290 0.87 # 5064 # 6299 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 3_5 - 464 TIGR02397 TIGR02397 355 0.00032 12.7 0.0 1 1 8.5e-06 0.00093 11.2 0.0 16 64 31 77 24 96 0.72 # 2320 # 3711 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 3_11 - 314 Yae1_N PF09811.4 39 0.00013 14.6 4.8 1 1 2.1e-06 0.00023 13.7 4.8 8 35 254 281 253 282 0.81 # 8010 # 8951 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.514 2_22 - 359 TIGR02012 TIGR02012 321 1.5e-47 155.2 0.0 1 1 2.5e-49 2.7e-47 154.3 0.0 49 284 45 307 11 329 0.78 # 22306 # 23382 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_23 - 419 Terminase_3 PF04466.8 387 8.3e-08 24.6 0.0 1 2 2.1e-09 2.2e-07 23.2 0.0 2 123 24 143 23 161 0.91 # 24797 # 26053 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 1_23 - 419 Terminase_3 PF04466.8 387 8.3e-08 24.6 0.0 2 2 0.08 8.7 -1.8 0.0 343 385 363 402 340 404 0.64 # 24797 # 26053 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.541 3_16 - 403 MULE PF10551.4 93 8e-15 47.9 0.0 1 1 2.4e-16 2.6e-14 46.3 0.0 16 91 185 260 170 262 0.86 # 15884 # 17092 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 6_1 - 98 IstB_IS21 PF01695.12 178 9.7e-31 99.5 0.0 1 1 2.1e-32 1.1e-30 99.3 0.0 109 178 3 73 1 73 0.96 # 67 # 360 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.497 2_22 - 359 IstB_IS21 PF01695.12 178 0.00018 14.0 0.0 1 1 7e-06 0.00038 12.9 0.0 52 81 56 85 51 100 0.83 # 22306 # 23382 # 1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 3_11 - 314 Glyco_trans_4_3 PF12000.3 171 0.0009 11.9 0.1 1 2 0.058 6.3 -0.6 0.0 19 83 117 181 79 187 0.71 # 8010 # 8951 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.514 3_11 - 314 Glyco_trans_4_3 PF12000.3 171 0.0009 11.9 0.1 2 2 3.7e-05 0.0041 9.8 0.0 10 65 200 256 193 259 0.86 # 8010 # 8951 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.514 6_3 - 195 BrkDBD PF09607.5 58 0.00082 12.0 0.0 1 1 1.4e-05 0.0016 11.1 0.0 28 50 20 42 16 45 0.92 # 1287 # 1871 # -1 # ID=6_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_16 - 188 Phage_AlpA PF05930.7 51 0.0002 14.1 0.0 1 1 3.2e-06 0.00034 13.4 0.0 4 51 80 132 77 132 0.85 # 18345 # 18908 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/049f5b00-08b7-4fcc-9a5e-4f2ba07e53d0 # Target file: checkm_output/bins/pm1489/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1489/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/049f5b00-08b7-4fcc-9a5e-4f2ba07e53d0 checkm_output/bins/pm1489/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:44:26 2017 # [ok]