# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 601 HTH_IclR PF09339.5 52 1.9e-07 20.0 0.1 1 1 1.2e-07 9.5e-07 17.8 0.1 15 40 14 39 13 40 0.95 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 ABC_tran PF00005.22 137 5.1e-05 13.0 0.2 1 1 3.6e-05 0.00029 10.5 0.0 8 30 440 462 434 474 0.86 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_40 PF14493.1 91 2.9e-05 13.7 0.0 1 1 8.8e-06 7e-05 12.4 0.0 4 35 8 39 5 49 0.89 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_38 PF13936.1 44 3e-12 35.4 1.3 1 1 1.1e-12 8.6e-12 33.9 0.2 6 41 3 38 2 40 0.94 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 MarR PF01047.17 59 2.6e-05 13.3 0.0 1 1 6.3e-06 5.1e-05 12.4 0.0 9 37 32 60 30 64 0.85 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 Sigma70_r4_2 PF08281.7 54 9.7e-09 24.1 0.0 1 1 7.4e-09 3e-08 22.5 0.0 25 48 16 39 12 40 0.94 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 Sigma70_r4_2 PF08281.7 54 3.2e-07 19.2 0.0 1 1 2.5e-07 9.9e-07 17.6 0.0 20 45 34 59 34 64 0.89 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 rve PF00665.21 120 2.9e-23 71.7 0.0 1 1 8.2e-24 6.6e-23 70.5 0.0 3 118 118 242 117 244 0.96 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 GerE PF00196.14 58 2.8e-07 19.2 0.0 1 1 7.1e-08 5.7e-07 18.2 0.0 17 39 16 38 8 40 0.89 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 Bac_DnaA PF00308.13 219 3.4e-10 29.2 0.0 1 1 7.8e-11 6.3e-10 28.3 0.0 37 134 446 542 416 548 0.86 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 Sigma70_r4 PF04545.11 50 3.9e-06 15.6 0.1 1 1 1.1e-06 8.6e-06 14.5 0.1 20 44 40 64 32 66 0.87 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 DUF2316 PF10078.4 89 4.1e-06 16.2 0.1 1 2 2.9e-05 0.00023 10.6 0.0 20 82 14 85 6 91 0.82 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 DUF2316 PF10078.4 89 4.1e-06 16.2 0.1 2 2 0.01 0.08 2.4 0.0 28 69 352 392 341 410 0.82 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA PF00004.24 132 6e-08 22.3 0.0 1 1 1.4e-08 1.1e-07 21.4 0.0 1 74 446 521 446 553 0.78 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 HTH_37 PF13744.1 80 7.4e-18 53.6 1.3 1 1 1.1e-18 8.5e-18 53.4 1.3 3 79 9 87 7 88 0.93 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_3 - 100 HTH_25 PF13413.1 62 3.2e-07 19.4 0.2 1 1 7.6e-08 6.1e-07 18.5 0.2 2 34 32 64 31 88 0.79 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 65 cobW PF02492.14 178 2.5e-05 13.1 0.4 1 1 3.4e-06 2.7e-05 13.0 0.4 128 175 3 49 1 53 0.84 # 8438 # 8632 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 1_1 - 601 AAA_16 PF13191.1 185 2.6e-06 16.8 0.5 1 2 0.024 0.19 1.0 0.0 39 90 55 112 54 128 0.77 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_16 PF13191.1 185 2.6e-06 16.8 0.5 2 2 7.4e-06 5.9e-05 12.4 0.0 21 41 440 460 426 520 0.81 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_22 PF13401.1 131 9.6e-07 18.4 0.1 1 2 6.1e-05 0.00049 9.6 0.0 5 21 444 460 440 473 0.83 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_22 PF13401.1 131 9.6e-07 18.4 0.1 2 2 0.0015 0.012 5.1 0.0 88 103 496 522 474 543 0.66 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 TIGR00362 TIGR00362 437 2.2e-11 32.4 0.0 1 1 4.2e-12 3.4e-11 31.8 0.0 139 240 445 544 369 550 0.87 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 NUMOD1 PF07453.8 37 4.3e-05 12.8 0.1 1 1 9.5e-06 7.6e-05 12.0 0.1 20 37 21 38 19 38 0.91 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 HTH_3 PF01381.17 55 1.2e-12 37.0 0.5 1 1 5e-13 2e-12 36.2 0.5 2 52 33 83 32 85 0.93 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 HTH_3 PF01381.17 55 1.4e-07 20.7 0.7 1 1 7.3e-08 2.9e-07 19.7 0.1 7 37 15 45 8 48 0.91 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_23 PF13384.1 50 1.2e-09 27.0 0.0 1 1 1.1e-09 4.2e-09 25.3 0.0 9 40 9 40 2 43 0.89 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 HTH_23 PF13384.1 50 1.8e-05 13.7 0.0 1 1 1.2e-05 4.7e-05 12.5 0.0 12 37 33 60 30 65 0.82 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 HTH_7 PF02796.10 45 4.4e-12 35.1 0.3 1 1 1.4e-12 1.1e-11 33.9 0.3 13 44 9 40 5 41 0.93 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 HTH_19 PF12844.2 64 1.1e-08 24.5 0.1 1 1 4.4e-09 1.7e-08 23.8 0.1 7 54 35 82 32 89 0.90 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 HTH_19 PF12844.2 64 2.1e-06 17.1 0.0 1 1 1.2e-06 4.7e-06 16.0 0.0 7 52 12 58 11 70 0.82 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_29 PF13551.1 112 4.3e-07 19.5 0.0 1 1 1.9e-07 1.5e-06 17.7 0.0 6 35 12 40 8 98 0.75 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 PhoH PF02562.11 205 3.5e-08 22.2 0.0 1 1 1.4e-08 1.1e-07 20.6 0.0 11 47 435 471 425 483 0.80 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_5 PF07728.9 139 1.6e-05 14.0 0.2 1 1 1.3e-05 0.00011 11.3 0.1 1 74 445 514 445 521 0.71 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 DUF258 PF03193.11 161 4e-06 15.4 0.0 1 1 8.6e-07 6.9e-06 14.7 0.0 21 75 429 495 411 525 0.69 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_28 PF13518.1 52 7.3e-09 25.0 0.1 1 1 2.5e-09 2e-08 23.6 0.1 7 34 12 39 8 40 0.89 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_24 PF13412.1 48 7.7e-08 21.1 1.2 1 1 3.2e-08 1.3e-07 20.4 0.1 10 40 11 40 10 43 0.89 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 HTH_24 PF13412.1 48 1.3e-05 13.9 0.3 1 1 1.2e-05 4.7e-05 12.2 0.0 18 36 41 59 34 60 0.93 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 HTH_30 PF13556.1 59 1.3e-05 14.2 0.0 1 1 3.9e-06 3.1e-05 13.0 0.0 10 34 15 39 10 43 0.86 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_10 PF04967.7 53 2.6e-05 13.2 0.0 1 1 8.7e-06 7e-05 11.8 0.0 24 45 18 39 15 43 0.89 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 HTH_31 PF13560.1 64 3.9e-13 38.9 0.0 1 1 1.5e-13 5.8e-13 38.3 0.0 6 56 32 81 31 90 0.92 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 HTH_31 PF13560.1 64 2.9e-06 16.9 0.0 1 1 2.9e-06 1.2e-05 14.9 0.0 12 54 15 60 13 61 0.84 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 HTH_6 PF01418.12 77 2.3e-06 16.7 0.1 1 1 3.9e-07 3.1e-06 16.3 0.1 17 56 23 62 6 73 0.89 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 AAA_25 PF13481.1 194 6.5e-06 15.0 0.0 1 1 1.7e-06 1.3e-05 14.0 0.0 25 58 434 468 413 514 0.80 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_14 PF13173.1 128 3.5e-07 19.6 0.0 1 1 1.1e-07 9.1e-07 18.2 0.0 2 95 443 543 442 560 0.67 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_Tnp_ISL3 PF13542.1 52 3.9e-06 15.4 0.1 1 1 1.6e-06 1.3e-05 13.8 0.0 21 49 11 39 2 40 0.82 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 CENP-B_N PF04218.8 53 9e-06 14.5 0.1 1 1 2.7e-06 2.2e-05 13.3 0.1 20 47 15 42 2 43 0.83 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 NTPase_1 PF03266.10 168 0.00015 10.9 0.9 1 2 0.0048 0.039 3.0 0.1 2 30 446 474 445 493 0.83 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 NTPase_1 PF03266.10 168 0.00015 10.9 0.9 2 2 0.00077 0.0062 5.6 0.0 88 112 498 522 484 544 0.73 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 GcrA PF07750.6 162 1.7e-05 14.4 0.0 1 1 5.3e-06 4.2e-05 13.1 0.0 6 36 5 34 2 42 0.92 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_26 PF13443.1 63 2.5e-07 20.3 0.0 1 1 1.4e-07 5.7e-07 19.1 0.0 4 41 11 48 10 58 0.90 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 HTH_26 PF13443.1 63 1.7e-06 17.6 0.1 1 1 7.9e-07 3.1e-06 16.7 0.1 4 45 34 74 32 81 0.81 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 HTH_11 PF08279.7 55 2.2e-07 19.9 0.1 1 1 7.2e-08 5.8e-07 18.5 0.1 8 37 12 39 5 40 0.80 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_3 - 100 MarR_2 PF12802.2 62 1.2e-05 14.3 0.1 1 1 5.2e-06 4.2e-05 12.6 0.1 21 41 40 60 2 63 0.85 # 3468 # 3767 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_1 - 601 TrmB PF01978.14 68 2.3e-05 13.5 0.4 1 1 1.1e-05 9.1e-05 11.6 0.0 16 44 11 39 10 40 0.93 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_10 PF12846.2 304 3e-06 16.1 0.6 1 2 0.047 0.37 -0.6 0.0 126 168 370 422 249 434 0.69 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 AAA_10 PF12846.2 304 3e-06 16.1 0.6 2 2 2.9e-06 2.3e-05 13.2 0.0 1 33 443 475 443 513 0.88 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 HTH_20 PF12840.2 61 4.4e-05 12.7 0.0 1 1 1.6e-05 0.00013 11.2 0.0 19 46 13 39 10 40 0.89 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_1 - 601 IstB_IS21 PF01695.12 178 3.2e-73 234.2 0.1 1 1 7.6e-74 6.1e-73 233.3 0.1 1 178 397 576 397 576 0.98 # 58 # 1860 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.517 1_8 - 65 Phe_tRNA-synt_N PF02912.13 73 2.3e-05 13.5 0.1 1 1 4.4e-06 3.5e-05 12.9 0.1 26 61 22 57 21 61 0.94 # 8438 # 8632 # -1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/13af7052-8e45-49c6-958c-cb439646a5fc # Target file: checkm_output/bins/pm1488/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1488/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/13af7052-8e45-49c6-958c-cb439646a5fc checkm_output/bins/pm1488/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:44:20 2017 # [ok]