# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_38 - 440 ATP-synt_ab PF00006.20 215 3.4e-77 251.5 0.0 1 1 5e-79 4.4e-77 251.1 0.0 2 215 149 358 148 358 0.99 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_14 - 341 HTH_IclR PF09339.5 52 2e-06 20.1 0.1 1 1 1.2e-07 5.3e-06 18.8 0.1 15 40 14 39 13 40 0.95 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 HTH_IclR PF09339.5 52 4.3e-05 15.8 0.0 1 1 2.8e-06 0.00013 14.4 0.0 11 37 151 177 150 181 0.89 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_13 - 260 ABC_tran PF00005.22 137 0.00013 15.0 0.3 1 1 2.4e-05 0.0011 12.1 0.0 8 30 99 121 93 136 0.86 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_38 - 440 ABC_tran PF00005.22 137 0.00028 13.9 0.1 1 1 1.7e-05 0.00075 12.6 0.1 6 35 157 186 155 210 0.91 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 3_16 - 89 HTH_22 PF13309.1 64 3e-05 16.5 0.0 1 1 2.5e-06 7.5e-05 15.2 0.0 45 61 24 40 4 41 0.81 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 3_19 - 184 HTH_22 PF13309.1 64 0.00053 12.5 1.1 1 1 5.8e-05 0.0017 10.9 0.1 45 63 161 179 143 180 0.87 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 HTH_22 PF13309.1 64 0.00058 12.4 0.0 1 1 4e-05 0.0012 11.4 0.0 46 64 21 39 10 39 0.89 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_14 - 341 HTH_AsnC-type PF13404.1 42 0.00052 12.3 0.0 1 1 1.5e-05 0.0013 11.0 0.0 18 36 18 36 15 40 0.91 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_10 - 162 rve_3 PF13683.1 67 8.6e-35 110.9 0.3 1 1 8.8e-36 1.3e-34 110.3 0.3 1 67 74 140 74 140 0.99 # 6360 # 6845 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_11 - 159 rve_3 PF13683.1 67 2.5e-32 103.1 0.1 1 1 3.2e-33 4.8e-32 102.1 0.1 2 67 80 145 79 145 0.98 # 8641 # 9117 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 3_15 - 252 rve_3 PF13683.1 67 1.9e-31 100.2 2.0 1 1 2.9e-32 4.3e-31 99.1 0.1 2 67 173 238 172 238 0.98 # 9627 # 10382 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 3_1 - 65 rve_3 PF13683.1 67 2.5e-11 35.8 0.0 1 1 2e-12 2.9e-11 35.5 0.0 5 55 2 53 1 54 0.96 # 82 # 276 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_6 - 65 rve_3 PF13683.1 67 1.4e-10 33.4 0.0 1 1 1.1e-11 1.6e-10 33.2 0.0 5 55 2 53 1 54 0.96 # 3659 # 3853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 3_12 - 391 rve_3 PF13683.1 67 1.5e-07 23.7 0.1 1 1 2.7e-08 4e-07 22.3 0.1 9 52 219 263 215 268 0.92 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_13 - 260 Sigma54_activat PF00158.21 168 0.00012 14.3 0.1 1 1 8.2e-06 0.00073 11.8 0.1 18 53 98 133 82 198 0.72 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_19 - 184 HTH_40 PF14493.1 91 2.7e-05 17.1 0.4 1 1 2.1e-06 9.4e-05 15.4 0.1 7 32 152 177 147 181 0.90 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 HTH_40 PF14493.1 91 0.00016 14.6 0.0 1 1 7.6e-06 0.00034 13.6 0.0 4 35 8 39 5 69 0.91 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 TIGR03010 TIGR03010 116 0.0006 12.2 0.1 1 2 0.057 5.1 -0.4 0.0 6 23 34 51 30 56 0.80 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 TIGR03010 TIGR03010 116 0.0006 12.2 0.1 2 2 5.3e-05 0.0048 9.4 0.1 15 42 69 97 66 99 0.92 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 HTH_38 PF13936.1 44 1.2e-11 36.8 0.5 1 1 1.5e-12 4.6e-11 34.9 0.2 6 41 3 38 2 40 0.94 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 HTH_38 PF13936.1 44 5.8e-10 31.4 0.2 1 1 2e-11 5.8e-10 31.4 0.2 10 41 148 179 147 181 0.94 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 HTH_38 PF13936.1 44 1.3e-06 20.7 0.1 1 1 1.1e-07 3.3e-06 19.4 0.1 5 42 2 39 2 39 0.94 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 3_16 - 89 DUF1492 PF07374.6 100 5.1e-05 16.1 0.0 1 1 1.2e-06 0.00011 15.1 0.0 73 94 23 44 9 47 0.91 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 3_19 - 184 MarR PF01047.17 59 0.00011 14.6 0.0 1 1 2.7e-06 0.00024 13.6 0.0 15 39 156 180 151 181 0.86 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 2_11 - 402 TBPIP PF07106.8 169 0.011 8.0 12.7 1 2 9.4e-05 0.0084 8.4 4.8 93 145 108 160 102 165 0.90 # 6076 # 7281 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.467 2_11 - 402 TBPIP PF07106.8 169 0.011 8.0 12.7 2 2 0.002 0.18 4.1 1.0 65 100 344 378 328 393 0.72 # 6076 # 7281 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.467 2_10 - 169 TIGR03302 TIGR03302 239 0.00016 13.6 0.2 1 1 3.6e-06 0.00032 12.6 0.2 26 59 29 62 13 95 0.79 # 5592 # 6098 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_3 - 389 HTH_8 PF02954.14 42 4.4e-05 15.8 0.1 1 1 4e-06 8.9e-05 14.8 0.1 18 36 39 57 37 58 0.94 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 4_2 - 91 HTH_8 PF02954.14 42 4.8e-05 15.7 1.9 1 2 1.6e-05 0.00036 12.8 0.0 8 42 3 36 2 36 0.94 # 640 # 912 # -1 # ID=4_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 4_2 - 91 HTH_8 PF02954.14 42 4.8e-05 15.7 1.9 2 2 0.036 0.8 2.1 0.4 4 13 68 77 65 78 0.88 # 640 # 912 # -1 # ID=4_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_22 - 57 HTH_8 PF02954.14 42 6.8e-05 15.2 0.0 1 1 3.7e-06 8.2e-05 14.9 0.0 8 42 18 51 13 51 0.93 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 HTH_8 PF02954.14 42 6.8e-05 15.2 0.0 1 1 3.7e-06 8.2e-05 14.9 0.0 8 42 18 51 13 51 0.93 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_16 - 89 TetR_N PF00440.18 47 0.00017 14.0 0.0 1 1 8.8e-06 0.00026 13.4 0.0 15 35 20 40 12 41 0.88 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 3_19 - 184 TetR_N PF00440.18 47 0.00028 13.3 0.0 1 1 4.8e-05 0.0014 11.0 0.0 9 34 154 176 151 177 0.89 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 TetR_N PF00440.18 47 0.00065 12.1 0.2 1 1 5.1e-05 0.0015 10.9 0.0 16 36 17 37 16 43 0.86 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_13 - 144 AAA_19 PF13245.1 76 9.3e-08 24.5 0.2 1 1 8.3e-09 3.7e-07 22.6 0.1 13 48 100 131 87 133 0.88 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 AAA_19 PF13245.1 76 0.00038 13.0 0.0 1 1 2.1e-05 0.00094 11.7 0.0 10 37 103 129 96 154 0.81 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_3 - 389 CbiA PF01656.18 195 5.8e-33 106.7 0.0 1 1 1.8e-34 7.9e-33 106.2 0.0 1 188 109 333 109 340 0.76 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 CbiA PF01656.18 195 3.1e-05 16.2 0.0 1 1 1.3e-06 6e-05 15.2 0.0 9 31 107 129 100 132 0.94 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_14 - 341 Sigma70_r4_2 PF08281.7 54 7.3e-08 24.6 0.0 1 1 3.7e-09 1.7e-07 23.4 0.0 25 48 16 39 12 40 0.94 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 Sigma70_r4_2 PF08281.7 54 5e-05 15.5 0.1 1 1 2.3e-06 0.0001 14.5 0.1 15 44 148 176 146 179 0.89 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_15 - 252 rve PF00665.21 120 3.8e-24 77.9 0.0 1 1 6.3e-25 7e-24 77.0 0.0 6 120 89 201 84 201 0.94 # 9627 # 10382 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_14 - 341 rve PF00665.21 120 1.3e-22 72.9 0.0 1 1 2.2e-23 2.5e-22 72.0 0.0 3 118 118 242 117 244 0.96 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 159 rve PF00665.21 120 3.6e-22 71.5 0.0 1 1 4.7e-23 5.2e-22 71.0 0.0 12 120 2 108 1 108 0.92 # 8641 # 9117 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 3_10 - 162 rve PF00665.21 120 5.5e-22 70.9 0.0 1 1 1.4e-22 1.5e-21 69.5 0.0 21 120 6 103 1 103 0.93 # 6360 # 6845 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 3_12 - 391 rve PF00665.21 120 5.3e-20 64.5 0.0 1 1 8.8e-21 9.8e-20 63.6 0.0 3 119 113 239 111 240 0.94 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 4_1 - 153 rve PF00665.21 120 2.4e-08 26.9 0.0 1 1 3.4e-09 3.8e-08 26.2 0.0 2 54 101 151 100 152 0.90 # 158 # 616 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.551 3_1 - 65 rve PF00665.21 120 0.0002 14.3 0.0 1 1 2.6e-05 0.00029 13.7 0.0 95 120 2 27 1 27 0.95 # 82 # 276 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_6 - 65 rve PF00665.21 120 0.00021 14.2 0.0 1 1 2.7e-05 0.0003 13.7 0.0 95 120 2 27 1 27 0.95 # 3659 # 3853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 1_13 - 260 AFG1_ATPase PF03969.11 362 6.4e-05 14.6 0.2 1 1 2.8e-06 0.00025 12.6 0.2 63 216 103 254 43 259 0.72 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_16 - 89 Terminase_5 PF06056.7 58 1.2e-05 17.5 0.0 1 1 6.6e-07 2.9e-05 16.3 0.0 15 46 23 54 20 61 0.85 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 1_14 - 341 Terminase_5 PF06056.7 58 0.00054 12.3 0.0 1 1 2.8e-05 0.0012 11.1 0.0 9 36 13 40 9 44 0.85 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_13 - 144 AAA_24 PF13479.1 213 0.00046 12.5 0.0 1 1 7.7e-06 0.00069 12.0 0.0 5 23 99 117 95 129 0.86 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_38 - 440 AAA_30 PF13604.1 196 0.00046 12.5 0.7 1 3 0.063 5.6 -0.8 0.0 47 72 61 86 53 96 0.91 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_38 - 440 AAA_30 PF13604.1 196 0.00046 12.5 0.7 2 3 0.00015 0.013 7.7 0.1 16 63 160 204 155 214 0.70 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_38 - 440 AAA_30 PF13604.1 196 0.00046 12.5 0.7 3 3 0.015 1.3 1.2 0.0 18 70 227 275 213 277 0.76 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 3_16 - 89 HTH_Tnp_1 PF01527.15 76 3.6e-22 70.9 0.1 1 1 2.9e-23 4.2e-22 70.7 0.1 1 75 1 71 1 72 0.96 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 1_16 - 89 HTH_Tnp_1 PF01527.15 76 3.6e-21 67.7 0.2 1 1 2.9e-22 4.3e-21 67.5 0.2 1 75 1 71 1 72 0.96 # 14379 # 14645 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.434 2_22 - 57 HTH_Tnp_1 PF01527.15 76 7.1e-18 57.2 0.5 1 1 5e-19 7.4e-18 57.1 0.5 2 49 6 53 5 57 0.93 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 HTH_Tnp_1 PF01527.15 76 7.1e-18 57.2 0.5 1 1 5e-19 7.4e-18 57.1 0.5 2 49 6 53 5 57 0.93 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 4_2 - 91 HTH_Tnp_1 PF01527.15 76 4e-15 48.3 0.6 1 1 3.9e-16 5.7e-15 47.9 0.6 12 76 1 66 1 66 0.95 # 640 # 912 # -1 # ID=4_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 1_7 - 37 HTH_Tnp_1 PF01527.15 76 5e-06 19.2 0.0 1 1 3.5e-07 5.2e-06 19.2 0.0 4 29 3 28 1 31 0.89 # 3877 # 3987 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.468 1_39 - 152 TIGR00464 TIGR00464 470 4.3e-05 14.9 0.3 1 1 5.3e-07 4.7e-05 14.8 0.3 350 425 39 116 17 133 0.82 # 32237 # 32692 # 1 # ID=1_39;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_14 - 341 GerE PF00196.14 58 1.6e-06 20.1 0.0 1 1 1.1e-07 3.2e-06 19.2 0.0 17 39 16 38 8 40 0.89 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 GerE PF00196.14 58 2.5e-05 16.3 0.1 1 1 1.7e-06 5.1e-05 15.3 0.1 10 35 150 175 148 181 0.91 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 GerE PF00196.14 58 0.00014 14.0 0.0 1 1 1.1e-05 0.00034 12.7 0.0 17 40 16 39 9 40 0.85 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_13 - 260 Bac_DnaA PF00308.13 219 9.5e-10 31.2 0.0 1 1 3.2e-11 1.4e-09 30.6 0.0 37 136 105 202 75 207 0.85 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 Bac_DnaA PF00308.13 219 0.00073 11.9 0.0 1 1 2.8e-05 0.0012 11.2 0.0 34 68 97 129 71 136 0.77 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_3 - 389 MipZ PF09140.6 261 1.7e-06 20.0 0.1 1 2 8.4e-08 7.5e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 MipZ PF09140.6 261 1.7e-06 20.0 0.1 2 2 0.043 3.9 -0.8 0.0 88 128 224 264 211 274 0.76 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_16 - 89 DivIC PF04977.10 80 3.1e-05 16.2 2.8 1 1 3.5e-07 3.1e-05 16.2 2.8 32 65 55 88 52 88 0.92 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 2_13 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00016 14.0 0.1 1 3 0.056 4.9 -0.7 0.1 125 187 93 150 78 163 0.64 # 8763 # 9971 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_13 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00016 14.0 0.1 2 3 0.00052 0.046 6.0 0.0 31 82 201 251 192 266 0.85 # 8763 # 9971 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_13 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00016 14.0 0.1 3 3 0.0016 0.15 4.3 0.1 161 232 277 348 251 355 0.59 # 8763 # 9971 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_14 - 341 Sigma70_r4 PF04545.11 50 0.00037 12.6 0.2 1 1 2e-05 0.0018 10.4 0.1 19 39 16 36 9 39 0.88 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_38 - 440 TIGR00962 TIGR00962 503 1.7e-52 171.1 0.0 1 1 2.3e-54 2.1e-52 170.8 0.0 64 414 65 410 18 433 0.87 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_14 - 341 DUF2316 PF10078.4 89 0.00047 12.9 0.0 1 1 1.1e-05 0.00099 11.9 0.0 20 82 14 85 5 91 0.82 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_13 - 260 AAA PF00004.24 132 1.7e-07 24.3 0.0 1 1 6.3e-09 2.8e-07 23.5 0.0 1 74 105 180 105 214 0.77 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA PF00004.24 132 6.6e-06 19.1 0.1 1 1 6.6e-07 2.9e-05 17.0 0.1 1 21 100 120 100 138 0.82 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_14 - 341 KorB PF08535.5 93 0.00062 12.7 0.0 1 1 2.9e-05 0.0025 10.7 0.0 2 30 16 44 15 108 0.78 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 159 rve_2 PF13333.1 52 8.1e-09 28.3 0.0 1 1 8.3e-10 1.5e-08 27.4 0.0 1 48 98 149 98 152 0.96 # 8641 # 9117 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 3_15 - 252 rve_2 PF13333.1 52 2.4e-07 23.6 0.0 1 1 2.8e-08 5e-07 22.5 0.0 1 48 191 242 191 245 0.87 # 9627 # 10382 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 3_10 - 162 rve_2 PF13333.1 52 3.8e-07 22.9 0.0 1 1 3.6e-08 6.4e-07 22.2 0.0 1 47 93 143 93 146 0.96 # 6360 # 6845 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 3_1 - 65 rve_2 PF13333.1 52 2.8e-06 20.1 0.0 1 1 2.2e-07 3.9e-06 19.7 0.0 1 35 17 52 17 54 0.93 # 82 # 276 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.497 1_6 - 65 rve_2 PF13333.1 52 3.3e-05 16.7 0.0 1 1 2.6e-06 4.6e-05 16.2 0.0 1 35 17 52 17 54 0.93 # 3659 # 3853 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 3_3 - 389 MerR_1 PF13411.1 69 2.2e-09 29.8 0.0 1 1 2.9e-10 6.5e-09 28.3 0.0 2 43 41 87 40 97 0.77 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_22 - 57 MerR_1 PF13411.1 69 4.6e-05 15.9 0.1 1 1 7.4e-06 0.00017 14.2 0.0 5 25 32 52 28 56 0.90 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 MerR_1 PF13411.1 69 4.6e-05 15.9 0.1 1 1 7.4e-06 0.00017 14.2 0.0 5 25 32 52 28 56 0.90 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 4_2 - 91 MerR_1 PF13411.1 69 0.00015 14.3 0.4 1 1 1.7e-05 0.00037 13.0 0.0 5 25 17 37 13 46 0.90 # 640 # 912 # -1 # ID=4_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 3_13 - 144 AAA_16 PF13191.1 185 4e-07 22.9 0.1 1 2 0.0052 0.23 4.1 0.0 122 173 20 88 2 96 0.61 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_16 PF13191.1 185 4e-07 22.9 0.1 2 2 4.7e-07 2.1e-05 17.3 0.0 23 61 96 134 87 139 0.81 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 AAA_16 PF13191.1 185 5.8e-05 15.9 1.1 1 1 5.9e-06 0.00026 13.7 0.1 21 41 99 119 86 151 0.78 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_13 - 260 AAA_22 PF13401.1 131 1.4e-06 21.3 0.2 1 2 4.5e-05 0.002 11.0 0.0 5 21 103 119 99 131 0.83 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_13 - 260 AAA_22 PF13401.1 131 1.4e-06 21.3 0.2 2 2 0.00073 0.032 7.1 0.0 88 103 154 181 126 203 0.66 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA_22 PF13401.1 131 0.0003 13.7 0.0 1 1 1.5e-05 0.00068 12.5 0.0 6 24 99 117 94 138 0.83 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 TIGR00362 TIGR00362 437 5.4e-11 34.5 0.0 1 1 1.4e-12 6.4e-11 34.3 0.0 139 240 104 203 28 210 0.86 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 TIGR00362 TIGR00362 437 1.7e-05 16.4 0.0 1 1 3.8e-07 1.7e-05 16.4 0.0 136 172 96 130 6 135 0.74 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_29 - 272 HTH_AraC PF00165.18 42 1.6e-23 74.7 0.2 1 3 0.067 6 -0.3 0.0 7 24 134 152 133 153 0.84 # 23299 # 24114 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.414 1_29 - 272 HTH_AraC PF00165.18 42 1.6e-23 74.7 0.2 2 3 2.4e-11 2.1e-09 29.8 0.0 1 41 173 213 173 214 0.97 # 23299 # 24114 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.414 1_29 - 272 HTH_AraC PF00165.18 42 1.6e-23 74.7 0.2 3 3 7e-15 6.2e-13 41.0 0.1 6 41 227 263 225 264 0.93 # 23299 # 24114 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.414 1_14 - 341 NUMOD1 PF07453.8 37 0.00023 13.8 0.1 1 1 9.7e-06 0.00043 12.9 0.1 20 37 21 38 19 38 0.91 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 NUMOD1 PF07453.8 37 0.00046 12.8 0.1 1 1 2e-05 0.00088 11.9 0.1 20 37 162 179 160 179 0.93 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_13 - 260 AAA_29 PF13555.1 62 0.00066 12.0 0.0 1 1 1.4e-05 0.0013 11.1 0.0 19 59 98 139 89 141 0.72 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_12 - 391 HTH_Tnp_Tc3_1 PF11427.3 50 0.00063 12.2 0.0 1 1 1.7e-05 0.0015 11.0 0.0 12 44 9 41 2 43 0.92 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 3_16 - 89 HTH_Tnp_IS630 PF01710.11 120 5.6e-05 15.6 0.1 1 1 1.4e-06 6e-05 15.5 0.1 13 68 16 72 5 88 0.70 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 3_19 - 184 HTH_Tnp_IS630 PF01710.11 120 0.00018 14.0 0.1 1 1 1.1e-05 0.00049 12.5 0.0 8 40 148 180 145 183 0.90 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_13 - 144 AAA_28 PF13521.1 163 0.00017 14.3 0.0 1 2 0.098 4.4 -0.0 0.0 98 125 22 49 6 76 0.55 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_28 PF13521.1 163 0.00017 14.3 0.0 2 2 1.9e-05 0.00085 12.1 0.0 2 25 100 127 99 136 0.76 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 AAA_28 PF13521.1 163 0.0011 11.7 1.8 1 1 5.9e-05 0.0026 10.4 0.2 1 43 104 151 104 172 0.70 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_14 - 341 HTH_3 PF01381.17 55 8.1e-07 21.6 0.1 1 1 5.3e-08 1.6e-06 20.7 0.1 7 37 15 45 8 48 0.91 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_3 - 389 HTH_3 PF01381.17 55 1.9e-05 17.3 0.0 1 1 1.5e-06 4.4e-05 16.1 0.0 10 41 40 71 32 87 0.84 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_19 - 184 HTH_3 PF01381.17 55 0.00013 14.6 0.1 1 1 8.5e-06 0.00025 13.6 0.1 2 31 149 180 149 183 0.88 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_16 - 89 HTH_23 PF13384.1 50 1.1e-09 30.6 0.1 1 1 2.7e-10 2.7e-09 29.3 0.0 13 45 14 47 5 54 0.79 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 1_14 - 341 HTH_23 PF13384.1 50 7.5e-09 27.9 0.0 1 1 2.3e-09 2.3e-08 26.3 0.0 9 40 9 40 2 43 0.89 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 HTH_23 PF13384.1 50 1.1e-07 24.2 1.1 1 1 3.6e-08 3.6e-07 22.5 0.1 2 39 143 180 142 182 0.91 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 2_22 - 57 HTH_23 PF13384.1 50 3.5e-07 22.6 0.0 1 1 4.3e-08 4.2e-07 22.3 0.0 7 43 16 53 12 57 0.85 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 HTH_23 PF13384.1 50 3.5e-07 22.6 0.0 1 1 4.3e-08 4.2e-07 22.3 0.0 7 43 16 53 12 57 0.85 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_12 - 391 HTH_23 PF13384.1 50 1e-06 21.1 0.1 1 1 2.6e-07 2.6e-06 19.8 0.1 10 39 10 39 8 40 0.92 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 4_2 - 91 HTH_23 PF13384.1 50 2e-06 20.2 2.1 1 1 2.1e-07 2e-06 20.1 0.1 8 45 2 39 1 44 0.80 # 640 # 912 # -1 # ID=4_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 1_16 - 89 HTH_23 PF13384.1 50 2.6e-06 19.8 0.0 1 1 5.3e-07 5.3e-06 18.8 0.0 8 47 12 49 7 52 0.82 # 14379 # 14645 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.434 3_3 - 389 HTH_23 PF13384.1 50 5.4e-05 15.6 0.2 1 1 1.6e-05 0.00016 14.1 0.2 17 37 39 59 32 61 0.87 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_19 - 184 HTH_7 PF02796.10 45 7.1e-15 47.4 1.3 1 1 6.5e-16 1.4e-14 46.4 0.4 1 44 141 181 141 182 0.97 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 HTH_7 PF02796.10 45 2.4e-11 36.1 0.3 1 1 2.7e-12 6e-11 34.9 0.3 13 44 9 40 5 41 0.93 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_12 - 391 HTH_7 PF02796.10 45 7.5e-06 18.5 0.3 1 1 6.6e-07 1.5e-05 17.6 0.3 7 42 3 38 1 40 0.91 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 3_16 - 89 HTH_7 PF02796.10 45 0.00014 14.5 0.6 1 1 9.3e-06 0.00021 13.9 0.1 5 39 5 39 2 44 0.90 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 1_14 - 341 HTH_19 PF12844.2 64 1.4e-05 17.9 0.0 1 1 2.7e-07 2.4e-05 17.1 0.0 7 52 12 58 11 70 0.82 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_13 - 144 Mg_chelatase PF01078.16 207 0.00024 13.1 0.0 1 1 3.9e-06 0.00035 12.5 0.0 24 42 99 117 84 127 0.90 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_16 - 89 HTH_29 PF13551.1 112 1.4e-08 27.7 0.1 1 1 1.3e-09 2e-08 27.2 0.1 4 48 14 56 10 86 0.78 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 3_19 - 184 HTH_29 PF13551.1 112 2.5e-07 23.6 0.3 1 1 1.2e-07 1.8e-06 20.9 0.0 1 35 148 181 148 183 0.95 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 HTH_29 PF13551.1 112 2.4e-06 20.4 0.3 1 1 4.8e-07 7.1e-06 18.9 0.0 6 35 12 40 8 102 0.73 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 4_2 - 91 HTH_29 PF13551.1 112 1.7e-05 17.7 0.2 1 1 1.8e-06 2.6e-05 17.1 0.2 14 67 14 61 2 81 0.71 # 640 # 912 # -1 # ID=4_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 2_22 - 57 HTH_29 PF13551.1 112 7.4e-05 15.7 0.1 1 1 8.6e-06 0.00013 14.9 0.1 14 39 29 54 16 56 0.82 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 HTH_29 PF13551.1 112 7.4e-05 15.7 0.1 1 1 8.6e-06 0.00013 14.9 0.1 14 39 29 54 16 56 0.82 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_13 - 260 Arch_ATPase PF01637.13 234 0.00083 11.8 0.1 1 1 6.9e-05 0.0031 9.9 0.0 8 37 90 119 87 140 0.79 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_38 - 440 Arch_ATPase PF01637.13 234 0.00086 11.7 0.0 1 1 3.2e-05 0.0014 11.1 0.0 30 131 172 265 150 273 0.79 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_13 - 260 PhoH PF02562.11 205 9.3e-08 24.2 0.1 1 1 7.1e-09 3.2e-07 22.5 0.0 11 48 94 131 83 159 0.83 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 PhoH PF02562.11 205 1.9e-06 20.0 0.0 1 1 6.2e-08 2.8e-06 19.4 0.0 16 47 94 125 80 141 0.85 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_5 PF07728.9 139 3.7e-06 19.5 0.1 1 2 0.089 4 -0.1 0.0 91 126 13 49 3 61 0.52 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_5 PF07728.9 139 3.7e-06 19.5 0.1 2 2 4.1e-07 1.8e-05 17.2 0.0 1 37 99 138 99 140 0.81 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 AAA_5 PF07728.9 139 2.6e-05 16.7 0.3 1 1 7.2e-06 0.00032 13.2 0.2 1 74 104 173 104 180 0.72 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 TIGR00763 TIGR00763 795 0.00053 10.9 0.0 1 1 7.7e-06 0.00069 10.5 0.0 356 372 100 116 81 128 0.86 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 ResIII PF04851.10 184 0.00033 13.3 0.0 1 2 6.9e-05 0.0061 9.1 0.0 8 50 89 127 49 135 0.78 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_13 - 260 ResIII PF04851.10 184 0.00033 13.3 0.0 2 2 0.0088 0.78 2.3 0.0 112 163 131 181 127 202 0.72 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_3 - 389 TIGR01968 TIGR01968 261 5.9e-07 21.4 0.1 1 2 6e-06 0.00053 11.8 0.0 3 38 108 143 106 145 0.94 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 TIGR01968 TIGR01968 261 5.9e-07 21.4 0.1 2 2 0.00011 0.0099 7.6 0.0 102 143 225 265 214 316 0.86 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 AAA_18 PF13238.1 129 0.00013 15.0 0.1 1 1 3.6e-06 0.00032 13.8 0.0 1 19 100 118 100 139 0.79 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_14 - 341 HTH_Tnp_IS1 PF12759.2 46 0.00067 11.9 0.1 1 1 2.6e-05 0.0023 10.2 0.0 21 43 17 39 10 42 0.88 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_18 - 211 FliH PF02108.11 128 9.7e-20 63.5 3.7 1 1 1.1e-21 9.7e-20 63.5 3.7 8 128 74 195 67 195 0.89 # 15765 # 16397 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_13 - 260 DUF258 PF03193.11 161 1.2e-05 17.3 0.0 1 1 2e-07 1.7e-05 16.8 0.0 21 78 88 157 70 192 0.71 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_18 - 211 HrpE PF06188.7 191 7e-12 38.2 7.3 1 1 1e-13 8.9e-12 37.8 7.3 20 153 20 153 13 189 0.87 # 15765 # 16397 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_38 - 440 DUF87 PF01935.12 229 5.3e-05 15.8 0.2 1 1 1.3e-06 0.00012 14.7 0.2 24 47 163 186 162 193 0.91 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 3_16 - 89 HTH_28 PF13518.1 52 1.2e-10 34.0 0.0 1 1 1.9e-11 2.2e-10 33.2 0.0 5 46 14 55 10 68 0.92 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 2_22 - 57 HTH_28 PF13518.1 52 6.2e-10 31.7 0.3 1 1 7.4e-11 8.3e-10 31.3 0.3 1 39 15 54 15 55 0.97 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 HTH_28 PF13518.1 52 6.2e-10 31.7 0.3 1 1 7.4e-11 8.3e-10 31.3 0.3 1 39 15 54 15 55 0.97 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 4_2 - 91 HTH_28 PF13518.1 52 2e-09 30.1 0.0 1 1 3.4e-10 3.7e-09 29.2 0.0 2 44 1 43 1 48 0.90 # 640 # 912 # -1 # ID=4_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.498 1_14 - 341 HTH_28 PF13518.1 52 4.3e-08 25.9 0.1 1 1 9.7e-09 1.1e-07 24.6 0.1 7 34 12 39 8 40 0.89 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 HTH_28 PF13518.1 52 1.6e-07 24.0 0.0 1 1 4.1e-08 4.5e-07 22.6 0.0 2 34 148 180 147 183 0.93 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_16 - 89 HTH_28 PF13518.1 52 7.6e-06 18.7 0.1 1 1 9.8e-07 1.1e-05 18.2 0.1 3 37 12 46 10 60 0.91 # 14379 # 14645 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.434 3_3 - 389 HTH_28 PF13518.1 52 0.00089 12.1 0.1 1 1 0.00018 0.002 10.9 0.1 11 31 38 58 32 61 0.86 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_14 - 341 HTH_24 PF13412.1 48 4e-07 22.2 0.1 1 1 7.8e-09 6.9e-07 21.4 0.1 10 40 11 40 10 43 0.89 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_29 - 272 HTH_18 PF12833.2 81 1.4e-25 82.0 0.6 1 2 0.025 1.1 2.2 0.0 44 77 134 167 115 171 0.80 # 23299 # 24114 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.414 1_29 - 272 HTH_18 PF12833.2 81 1.4e-25 82.0 0.6 2 2 6.5e-26 2.9e-24 77.8 0.2 2 79 187 263 186 265 0.97 # 23299 # 24114 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.414 3_16 - 89 HTH_18 PF12833.2 81 0.00014 14.8 0.0 1 1 5.2e-06 0.00023 14.0 0.0 1 40 27 66 27 83 0.88 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 1_14 - 341 HTH_30 PF13556.1 59 7.9e-05 15.0 0.0 1 1 1.9e-06 0.00017 13.9 0.0 10 34 15 39 10 43 0.86 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 HTH_10 PF04967.7 53 0.00014 14.2 0.0 1 1 7.5e-06 0.00033 13.0 0.0 25 47 160 182 156 183 0.88 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 HTH_10 PF04967.7 53 0.00021 13.7 0.0 1 1 8.8e-06 0.00039 12.8 0.0 24 45 18 39 15 43 0.89 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_14 - 341 HTH_31 PF13560.1 64 2.4e-05 17.2 0.0 1 1 1.4e-06 6.1e-05 16.0 0.0 12 54 15 60 13 61 0.85 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_3 - 389 HTH_31 PF13560.1 64 3.7e-05 16.7 0.0 1 1 2.5e-06 0.00011 15.2 0.0 12 45 37 69 32 89 0.84 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_25 - 153 UvrD_C_2 PF13538.1 104 2.9e-05 16.9 0.0 1 1 4.8e-07 4.3e-05 16.4 0.0 2 80 58 140 57 152 0.71 # 17757 # 18215 # 1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 3_13 - 144 NACHT PF05729.7 166 0.00019 13.9 0.0 1 1 4.8e-06 0.00043 12.7 0.0 3 27 100 124 98 137 0.84 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_17 PF13207.1 121 1.2e-05 18.9 0.0 1 2 0.025 2.2 1.9 0.0 20 53 8 46 4 91 0.62 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_17 PF13207.1 121 1.2e-05 18.9 0.0 2 2 1.8e-06 0.00016 15.3 0.0 2 20 100 118 99 136 0.80 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_13 - 403 Transposase_mut PF00872.13 381 4.6e-121 396.6 0.1 1 1 1.2e-122 5.2e-121 396.4 0.1 9 379 10 377 1 379 0.97 # 8763 # 9971 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 2_16 - 72 Transposase_mut PF00872.13 381 3.7e-11 34.8 0.0 1 1 9.4e-13 4.2e-11 34.7 0.0 337 379 2 44 1 46 0.97 # 12544 # 12759 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.412 3_13 - 144 TIGR03346 TIGR03346 853 0.00034 11.4 0.0 1 1 5.3e-06 0.00048 10.9 0.0 581 622 84 124 79 137 0.78 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_25 PF13481.1 194 2.7e-07 22.9 0.0 1 1 1.3e-08 3.7e-07 22.4 0.0 22 64 81 129 57 138 0.76 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 AAA_25 PF13481.1 194 2.2e-05 16.6 0.0 1 1 1.2e-06 3.7e-05 15.9 0.0 22 58 90 127 71 183 0.79 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_38 - 440 AAA_25 PF13481.1 194 4.9e-05 15.5 0.2 1 1 3.8e-06 0.00011 14.3 0.1 24 156 151 266 135 281 0.64 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_18 - 211 NolV PF06635.7 207 2.6e-13 42.3 2.4 1 1 3.6e-15 3.2e-13 42.0 2.4 35 196 35 197 17 206 0.91 # 15765 # 16397 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 3_13 - 144 RuvB_N PF05496.7 234 6.6e-05 14.7 0.0 1 1 1.9e-06 8.6e-05 14.4 0.0 48 70 95 117 68 137 0.85 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 RuvB_N PF05496.7 234 0.00033 12.5 0.0 1 1 1.3e-05 0.00058 11.7 0.0 50 119 102 182 92 190 0.65 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_13 - 260 AAA_14 PF13173.1 128 1.1e-06 21.4 0.0 1 1 2.3e-08 2e-06 20.5 0.0 2 96 102 203 101 221 0.67 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_16 - 89 Mga PF05043.8 87 0.00015 14.8 0.0 1 2 1.6e-05 0.0014 11.7 0.0 29 53 20 44 5 47 0.82 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 3_16 - 89 Mga PF05043.8 87 0.00015 14.8 0.0 2 2 0.033 2.9 1.1 0.0 26 52 59 85 53 86 0.73 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 3_3 - 389 VirC1 PF07015.6 231 8.8e-06 17.6 0.1 1 2 2.5e-05 0.0022 9.8 0.0 4 42 109 147 107 153 0.91 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 VirC1 PF07015.6 231 8.8e-06 17.6 0.1 2 2 0.00054 0.048 5.4 0.0 100 139 251 290 218 321 0.72 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_22 - 57 HTH_Tnp_ISL3 PF13542.1 52 1.3e-05 17.1 0.0 1 1 7.1e-07 1.6e-05 16.8 0.0 9 51 8 51 7 52 0.96 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 HTH_Tnp_ISL3 PF13542.1 52 1.3e-05 17.1 0.0 1 1 7.1e-07 1.6e-05 16.8 0.0 9 51 8 51 7 52 0.96 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_14 - 341 HTH_Tnp_ISL3 PF13542.1 52 1.8e-05 16.6 0.1 1 1 3.1e-06 6.9e-05 14.8 0.0 21 49 11 39 2 40 0.82 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_12 - 391 HTH_Tnp_ISL3 PF13542.1 52 0.00036 12.5 0.0 1 1 4.1e-05 0.00091 11.2 0.0 32 49 22 39 20 40 0.92 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 3_3 - 389 MerR PF00376.18 38 3.4e-12 38.6 0.1 1 1 2.7e-13 1.2e-11 36.8 0.0 1 30 41 69 41 71 0.89 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_12 - 391 MerR PF00376.18 38 0.0013 11.1 1.7 1 2 0.00041 0.018 7.4 0.1 4 21 22 39 19 48 0.86 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 3_12 - 391 MerR PF00376.18 38 0.0013 11.1 1.7 2 2 0.019 0.82 2.1 0.3 14 21 90 97 89 110 0.71 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 3_13 - 144 AAA_33 PF13671.1 143 0.00022 13.8 0.3 1 2 0.07 6.3 -0.6 0.0 44 44 39 39 4 77 0.46 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 AAA_33 PF13671.1 143 0.00022 13.8 0.3 2 2 8.7e-06 0.00077 12.1 0.1 2 19 100 117 100 129 0.85 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_19 - 184 CENP-B_N PF04218.8 53 2.5e-05 16.4 0.4 1 1 3.5e-06 6.2e-05 15.2 0.0 19 45 155 181 150 183 0.87 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 CENP-B_N PF04218.8 53 6.2e-05 15.2 0.1 1 1 6.6e-06 0.00012 14.3 0.1 20 47 15 42 2 43 0.83 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_16 - 89 CENP-B_N PF04218.8 53 9.4e-05 14.6 0.1 1 1 1.3e-05 0.00023 13.3 0.0 17 45 16 44 7 45 0.90 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 2_22 - 57 CENP-B_N PF04218.8 53 0.00041 12.5 0.1 1 1 2.6e-05 0.00045 12.4 0.1 10 44 14 49 5 54 0.85 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 CENP-B_N PF04218.8 53 0.00041 12.5 0.1 1 1 2.6e-05 0.00045 12.4 0.1 10 44 14 49 5 54 0.85 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_13 - 144 ArgK PF03308.11 267 0.00013 13.5 0.0 1 1 2.2e-06 0.0002 12.9 0.0 28 60 96 128 80 133 0.86 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 1_13 - 260 NTPase_1 PF03266.10 168 0.00021 13.8 0.1 1 2 0.0016 0.14 4.5 0.1 2 30 105 133 104 153 0.83 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_13 - 260 NTPase_1 PF03266.10 168 0.00021 13.8 0.1 2 2 0.00025 0.022 7.2 0.0 88 112 157 181 144 204 0.72 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_14 - 341 GcrA PF07750.6 162 9.7e-05 15.3 0.0 1 1 2.4e-06 0.00021 14.2 0.0 6 36 5 34 2 51 0.93 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_38 - 440 TIGR01039 TIGR01039 462 3.6e-57 186.5 0.0 1 1 5.1e-59 4.6e-57 186.2 0.0 2 410 24 424 23 434 0.91 # 30720 # 32039 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_11 - 159 DDE_Tnp_IS240 PF13610.1 140 1.7e-08 27.3 0.0 1 1 8.9e-10 2e-08 27.1 0.0 23 139 19 137 9 138 0.88 # 8641 # 9117 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 3_15 - 252 DDE_Tnp_IS240 PF13610.1 140 7.5e-08 25.2 0.0 1 1 5.1e-09 1.1e-07 24.6 0.0 21 139 110 230 89 231 0.88 # 9627 # 10382 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 3_10 - 162 DDE_Tnp_IS240 PF13610.1 140 2.8e-05 16.9 0.0 1 1 1.5e-06 3.4e-05 16.6 0.0 59 139 51 132 34 133 0.77 # 6360 # 6845 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 4_1 - 153 DDE_Tnp_IS240 PF13610.1 140 3.9e-05 16.4 0.0 1 1 2.7e-06 6e-05 15.8 0.0 10 41 114 146 107 152 0.90 # 158 # 616 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.551 1_14 - 341 HTH_26 PF13443.1 63 1.5e-06 21.1 0.0 1 1 1e-07 3e-06 20.2 0.0 4 41 11 48 10 58 0.90 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_16 - 89 HTH_26 PF13443.1 63 6.2e-05 16.0 0.0 1 1 5.8e-06 0.00017 14.5 0.0 8 33 19 44 14 56 0.80 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 3_19 - 184 HTH_26 PF13443.1 63 0.00049 13.1 0.2 1 1 4.8e-05 0.0014 11.6 0.2 6 33 154 181 142 183 0.91 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_3 - 389 HTH_17 PF12728.2 51 3.6e-07 23.2 0.0 1 1 1.6e-07 3.5e-06 20.0 0.0 4 30 42 68 39 76 0.85 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_19 - 184 HTH_17 PF12728.2 51 3.1e-06 20.2 0.7 1 2 0.00022 0.0049 9.9 0.3 26 46 134 154 121 158 0.87 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 HTH_17 PF12728.2 51 3.1e-06 20.2 0.7 2 2 0.00072 0.016 8.3 0.0 5 23 162 180 159 182 0.88 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_16 - 89 HTH_17 PF12728.2 51 1.9e-05 17.7 0.0 1 1 1.9e-06 4.3e-05 16.5 0.0 4 26 24 44 23 58 0.82 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 1_14 - 341 HTH_17 PF12728.2 51 0.0011 12.1 0.9 1 1 0.0001 0.0022 11.0 0.1 6 26 22 43 18 86 0.88 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_18 - 211 ATP-synt_B PF00430.13 132 5.9e-05 15.7 6.6 1 2 6.6e-07 5.9e-05 15.7 6.6 57 132 33 108 21 108 0.94 # 15765 # 16397 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_18 - 211 ATP-synt_B PF00430.13 132 5.9e-05 15.7 6.6 2 2 0.028 2.5 0.7 0.0 93 127 166 200 122 204 0.78 # 15765 # 16397 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_14 - 341 HTH_11 PF08279.7 55 1.3e-06 20.8 0.1 1 1 1.1e-07 3.2e-06 19.5 0.1 8 37 12 39 5 40 0.80 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_19 - 184 HTH_11 PF08279.7 55 3.9e-06 19.3 0.5 1 1 1.5e-06 4.4e-05 15.9 0.1 9 37 151 180 142 181 0.83 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 HTH_11 PF08279.7 55 0.00024 13.5 0.0 1 1 2.1e-05 0.00061 12.2 0.0 20 37 22 39 7 40 0.87 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 3_19 - 184 TrmB PF01978.14 68 5.7e-06 18.8 0.0 1 1 2.4e-07 1e-05 17.9 0.0 19 44 155 180 149 181 0.88 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 TrmB PF01978.14 68 0.00024 13.6 0.0 1 1 1.1e-05 0.0005 12.5 0.0 16 44 11 39 10 40 0.93 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 3_12 - 391 LacI PF00356.16 46 4.9e-05 15.7 0.0 1 1 3.9e-06 0.00035 13.0 0.0 2 34 20 52 19 61 0.91 # 7107 # 8279 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.546 1_24 - 88 FtsA PF14450.1 120 0.00011 14.7 0.0 1 1 1.5e-06 0.00013 14.5 0.0 37 91 8 84 2 87 0.86 # 18937 # 19200 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.413 1_14 - 341 DUF1670 PF07900.6 220 0.0009 11.2 0.1 1 1 1.8e-05 0.0016 10.4 0.1 189 219 9 39 4 40 0.92 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_13 - 260 AAA_10 PF12846.2 304 7e-06 18.3 0.7 1 3 0.055 2.5 0.1 0.0 127 169 38 82 8 95 0.68 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_13 - 260 AAA_10 PF12846.2 304 7e-06 18.3 0.7 2 3 1.9e-06 8.5e-05 14.8 0.1 1 33 102 134 102 171 0.89 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_13 - 260 AAA_10 PF12846.2 304 7e-06 18.3 0.7 3 3 0.048 2.2 0.3 0.0 202 247 142 192 134 202 0.68 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 AAA_10 PF12846.2 304 0.00022 13.4 0.0 1 1 8.4e-06 0.00038 12.7 0.0 3 35 99 131 98 139 0.87 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_19 - 184 HTH_20 PF12840.2 61 5.9e-05 15.6 0.0 1 2 0.033 1.5 1.5 0.0 33 52 8 27 6 28 0.89 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 HTH_20 PF12840.2 61 5.9e-05 15.6 0.0 2 2 9.6e-05 0.0043 9.7 0.0 3 43 110 177 108 181 0.82 # 11777 # 12328 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_14 - 341 HTH_20 PF12840.2 61 0.00034 13.2 0.0 1 1 1.6e-05 0.00073 12.1 0.0 19 46 13 39 10 40 0.89 # 12638 # 13660 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.527 1_18 - 211 TIGR01144 TIGR01144 147 6.6e-05 15.3 2.8 1 1 1.5e-06 6.6e-05 15.3 2.8 51 129 31 109 21 127 0.86 # 15765 # 16397 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 3_24 - 307 TIGR01144 TIGR01144 147 0.08 5.3 11.6 1 2 0.0014 0.062 5.6 8.5 42 91 115 168 96 179 0.75 # 16173 # 17093 # 1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 3_24 - 307 TIGR01144 TIGR01144 147 0.08 5.3 11.6 2 2 0.037 1.6 1.0 0.4 60 88 182 210 165 241 0.49 # 16173 # 17093 # 1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.421 3_3 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 1 2 2.3e-06 0.0001 14.1 0.0 9 40 115 147 109 154 0.90 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 2 2 0.0044 0.19 3.4 0.0 125 136 233 244 223 252 0.89 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 ArsA_ATPase PF02374.10 305 6.8e-05 14.7 0.0 1 1 2.4e-06 0.0001 14.1 0.0 5 34 101 130 97 133 0.87 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_3 - 389 AAA_31 PF13614.1 157 2.8e-06 20.1 0.1 1 2 1.6e-05 0.00071 12.3 0.0 2 49 108 155 107 178 0.86 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_3 - 389 AAA_31 PF13614.1 157 2.8e-06 20.1 0.1 2 2 0.002 0.087 5.5 0.1 116 151 229 267 217 271 0.79 # 1076 # 2242 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 AAA_31 PF13614.1 157 0.00022 14.0 0.0 1 1 1.5e-05 0.00067 12.3 0.0 10 36 106 132 85 136 0.93 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_13 - 403 MULE PF10551.4 93 6.5e-15 47.9 0.0 1 1 2.4e-16 2.1e-14 46.3 0.0 16 91 185 260 170 262 0.86 # 8763 # 9971 # 1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_13 - 260 IstB_IS21 PF01695.12 178 4e-73 237.3 0.1 1 2 0.098 4.4 -0.6 0.0 64 97 25 57 24 61 0.64 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_13 - 260 IstB_IS21 PF01695.12 178 4e-73 237.3 0.1 2 2 2e-74 8.7e-73 236.2 0.1 1 178 56 235 56 235 0.98 # 11859 # 12638 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 3_13 - 144 IstB_IS21 PF01695.12 178 2.4e-34 111.0 0.2 1 2 0.027 1.2 1.2 0.2 83 111 4 32 2 33 0.89 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 3_13 - 144 IstB_IS21 PF01695.12 178 2.4e-34 111.0 0.2 2 2 5.8e-35 2.6e-33 107.6 0.0 1 84 51 134 51 141 0.96 # 8279 # 8710 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.569 2_22 - 57 BrkDBD PF09607.5 58 7e-05 15.1 0.3 1 1 4.6e-06 0.0002 13.7 0.3 3 48 8 50 7 56 0.74 # 18608 # 18778 # 1 # ID=2_22;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_26 - 57 BrkDBD PF09607.5 58 7e-05 15.1 0.3 1 1 4.6e-06 0.0002 13.7 0.3 3 48 8 50 7 56 0.74 # 18387 # 18557 # 1 # ID=3_26;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 3_15 - 252 HTH_21 PF13276.1 60 1.6e-13 43.3 6.0 1 1 1.5e-14 3.3e-13 42.2 6.0 3 60 16 71 13 72 0.89 # 9627 # 10382 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 4_1 - 153 HTH_21 PF13276.1 60 1.6e-10 33.7 1.1 1 1 1.3e-11 2.9e-10 32.8 1.1 8 59 28 78 22 80 0.90 # 158 # 616 # -1 # ID=4_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.551 3_21 - 127 HTH_21 PF13276.1 60 6.8e-08 25.2 2.2 1 1 5.7e-09 1.3e-07 24.4 2.2 16 59 3 45 2 46 0.89 # 14804 # 15184 # -1 # ID=3_21;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.509 1_15 - 141 HTH_21 PF13276.1 60 1.2e-06 21.2 0.6 1 1 9.6e-08 2.1e-06 20.4 0.6 10 60 38 86 29 87 0.82 # 13921 # 14343 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.452 3_16 - 89 Phage_AlpA PF05930.7 51 9.1e-06 18.1 0.0 1 1 2.2e-07 1.9e-05 17.1 0.0 5 26 23 44 21 46 0.91 # 10460 # 10726 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.476 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/cf7a0db8-9c1f-40c5-add3-d7238da77c25 # Target file: checkm_output/bins/pm1477/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1477/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cf7a0db8-9c1f-40c5-add3-d7238da77c25 checkm_output/bins/pm1477/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:44:13 2017 # [ok]