# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 340 Zn_Tnp_IS1 PF03811.8 36 3.9e-22 69.8 4.2 1 1 1e-23 6.1e-22 69.1 4.2 1 36 1 36 1 36 0.99 # 6546 # 7565 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_23 - 206 CbiA PF01656.18 195 4.7e-27 86.8 0.6 1 1 1.2e-28 7e-27 86.3 0.6 1 142 4 122 4 173 0.75 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_25 - 291 Rep_3 PF01051.16 222 9.2e-23 73.2 0.1 1 1 2e-24 1.2e-22 72.8 0.1 2 215 22 274 21 279 0.84 # 18761 # 19633 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_45 - 462 AAA_23 PF13476.1 202 0.0038 9.7 4.4 1 2 0.00032 0.019 7.4 1.2 106 198 122 233 62 244 0.68 # 35069 # 36454 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_45 - 462 AAA_23 PF13476.1 202 0.0038 9.7 4.4 2 2 0.0051 0.31 3.5 0.1 144 191 349 403 302 437 0.60 # 35069 # 36454 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_23 - 206 AAA_24 PF13479.1 213 4.7e-07 21.8 0.2 1 1 1.1e-08 6.8e-07 21.2 0.2 11 88 10 94 3 98 0.86 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 MipZ PF09140.6 261 1.2e-13 42.9 1.0 1 2 3.4e-10 2.1e-08 25.7 0.1 2 46 3 45 2 56 0.84 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 MipZ PF09140.6 261 1.2e-13 42.9 1.0 2 2 2.9e-07 1.8e-05 16.1 0.2 93 141 69 117 47 132 0.81 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 Fer4_NifH PF00142.13 273 9.1e-05 13.9 0.0 1 1 2.3e-06 0.00014 13.3 0.0 8 63 10 64 3 93 0.75 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_15 - 95 Atg8 PF02991.11 104 0.00034 12.8 0.1 1 2 0.015 0.89 1.9 0.0 45 85 6 49 2 55 0.55 # 11467 # 11751 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.393 1_15 - 95 Atg8 PF02991.11 104 0.00034 12.8 0.1 2 2 7.4e-05 0.0045 9.2 0.0 55 92 56 93 52 94 0.93 # 11467 # 11751 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.393 1_9 - 340 zinc_ribbon_4 PF13717.1 36 2.3e-05 16.3 1.3 1 1 7.8e-07 4.7e-05 15.3 1.3 3 35 6 39 5 40 0.86 # 6546 # 7565 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_23 - 206 TIGR01968 TIGR01968 261 1.3e-13 42.8 3.4 1 2 4.6e-09 2.8e-07 22.0 0.4 2 39 2 38 1 47 0.89 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 TIGR01968 TIGR01968 261 1.3e-13 42.8 3.4 2 2 4.7e-09 2.9e-07 21.9 0.1 99 217 63 181 43 194 0.73 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 AAA_18 PF13238.1 129 0.00035 13.1 0.0 1 1 9.4e-06 0.00057 12.4 0.0 8 84 12 86 10 106 0.67 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_9 - 340 HTH_Tnp_IS1 PF12759.2 46 6.5e-16 49.8 0.1 1 1 2.2e-17 1.4e-15 48.8 0.1 1 27 43 69 43 71 0.97 # 6546 # 7565 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_25 - 291 HTH_36 PF13730.1 55 0.00037 12.9 0.0 1 1 2.1e-05 0.0013 11.2 0.0 6 55 210 263 205 263 0.83 # 18761 # 19633 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.464 1_23 - 206 AAA_17 PF13207.1 121 4.9e-05 16.4 0.0 1 1 1e-06 6.4e-05 16.0 0.0 9 78 12 94 11 181 0.73 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 VirC1 PF07015.6 231 6.9e-14 43.6 0.1 1 1 2.1e-15 1.3e-13 42.8 0.1 1 123 1 114 1 173 0.82 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_9 - 340 zinc_ribbon_5 PF13719.1 37 7.8e-06 17.7 0.8 1 1 3.2e-07 2e-05 16.4 0.8 3 36 6 40 5 41 0.83 # 6546 # 7565 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_44 - 227 Trans_reg_C PF00486.23 77 1.1e-27 88.1 0.0 1 1 6.5e-29 2e-27 87.2 0.0 1 77 146 221 146 221 0.96 # 34199 # 34879 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.511 1_60 - 174 Trans_reg_C PF00486.23 77 4.4e-27 86.1 0.3 1 1 4.5e-28 1.4e-26 84.5 0.0 1 77 93 168 93 168 0.97 # 50755 # 51276 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.527 1_9 - 340 Zn_Tnp_IS1595 PF12760.2 46 0.0004 12.5 2.7 1 1 1.2e-05 0.00072 11.6 2.7 20 46 7 38 4 38 0.79 # 6546 # 7565 # -1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.535 1_23 - 206 ArsA_ATPase PF02374.10 305 1.4e-07 23.0 0.9 1 2 7.9e-09 4.8e-07 21.2 0.1 5 45 6 45 1 57 0.87 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 ArsA_ATPase PF02374.10 305 1.4e-07 23.0 0.9 2 2 0.021 1.3 0.1 0.1 124 135 72 83 49 85 0.76 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 AAA_31 PF13614.1 157 2.4e-11 36.0 0.1 1 2 6.6e-10 4e-08 25.5 0.0 1 42 2 42 2 67 0.86 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_23 - 206 AAA_31 PF13614.1 157 2.4e-11 36.0 0.1 2 2 8.7e-05 0.0053 8.9 0.1 110 152 68 108 49 111 0.82 # 17387 # 18004 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.427 1_30 - 363 MetW PF07021.7 193 0.00066 11.3 0.0 1 1 1.9e-05 0.0012 10.4 0.0 117 152 236 270 232 273 0.83 # 22397 # 23485 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.619 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/1dbb03a0-f667-468e-8c9f-7cd6a008a069 # Target file: checkm_output/bins/pm1474/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1474/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1dbb03a0-f667-468e-8c9f-7cd6a008a069 checkm_output/bins/pm1474/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:44:03 2017 # [ok]