# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 436 ABC_tran PF00005.22 137 2.1e-05 14.0 0.1 1 2 6.9e-05 0.00048 9.6 0.1 5 36 13 44 10 184 0.83 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 ABC_tran PF00005.22 137 2.1e-05 14.0 0.1 2 2 0.014 0.1 2.1 0.0 123 135 327 339 242 341 0.79 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 314 HTH_38 PF13936.1 44 3.9e-05 12.4 0.0 1 1 1.3e-05 9.2e-05 11.2 0.0 12 39 281 308 274 311 0.75 # 940 # 1881 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_2 - 95 Sigma70_r4_2 PF08281.7 54 1.8e-05 13.4 0.0 1 1 1e-05 3.6e-05 12.4 0.0 21 46 38 63 37 63 0.91 # 464 # 748 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_3 - 314 Sigma70_r4_2 PF08281.7 54 7.6e-05 11.4 0.0 1 1 4.4e-05 0.00015 10.4 0.0 27 47 290 310 281 311 0.91 # 940 # 1881 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_4 - 436 AAA_23 PF13476.1 202 7e-10 28.7 6.9 1 1 2.6e-10 1.8e-09 27.3 5.7 1 53 2 52 2 292 0.67 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 SMC_N PF02463.14 220 9.6e-13 36.9 0.0 1 1 2.5e-12 1.8e-11 32.8 0.0 4 212 2 385 1 391 0.84 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_21 PF13304.1 303 3.2e-23 72.1 7.2 1 2 4e-06 2.8e-05 13.3 0.0 1 51 21 75 21 82 0.82 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_21 PF13304.1 303 3.2e-23 72.1 7.2 2 2 3.8e-20 2.7e-19 59.3 4.2 58 303 156 376 125 376 0.71 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_29 PF13555.1 62 3.6e-05 12.5 0.1 1 1 1.7e-05 0.00012 10.9 0.0 8 39 7 35 1 44 0.75 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_2 - 95 HTH_3 PF01381.17 55 8.4e-13 37.3 0.0 1 1 2.8e-13 2e-12 36.1 0.0 1 45 35 79 35 81 0.92 # 464 # 748 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_2 - 95 HTH_19 PF12844.2 64 2.1e-11 33.0 0.0 1 2 0.064 0.45 -0.1 0.0 14 33 10 31 5 34 0.72 # 464 # 748 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_2 - 95 HTH_19 PF12844.2 64 2.1e-11 33.0 0.0 2 2 1.4e-11 9.7e-11 30.9 0.0 4 41 35 74 35 89 0.87 # 464 # 748 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_2 - 95 DUF1870 PF08965.5 118 1.8e-05 13.6 0.0 1 1 3.3e-06 2.3e-05 13.2 0.0 5 62 34 88 29 94 0.79 # 464 # 748 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_4 - 436 TIGR00611 TIGR00611 365 1.3e-07 19.8 0.1 1 1 3.1e-08 2.2e-07 19.1 0.1 6 62 3 58 1 68 0.87 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_2 - 95 HTH_28 PF13518.1 52 6.1e-05 12.3 0.0 1 1 1.2e-05 8.3e-05 11.8 0.0 7 32 36 63 28 76 0.79 # 464 # 748 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_2 - 95 HTH_31 PF13560.1 64 7.3e-12 34.6 0.1 1 1 2e-12 1.4e-11 33.7 0.0 6 51 35 79 33 83 0.88 # 464 # 748 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_4 - 436 AAA_15 PF13175.1 415 7.7e-16 47.1 10.2 1 2 0.00018 0.0012 6.9 6.8 4 133 3 201 1 208 0.60 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 AAA_15 PF13175.1 415 7.7e-16 47.1 10.2 2 2 1.6e-14 1.1e-13 40.1 0.1 336 415 303 375 242 375 0.80 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 TIGR00634 TIGR00634 563 7.5e-05 10.5 0.0 1 1 2.6e-05 0.00018 9.3 0.0 4 38 2 35 1 53 0.85 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_3 - 314 HTH_17 PF12728.2 51 1.5e-05 14.4 0.1 1 3 0.044 0.31 0.6 0.0 10 25 180 195 178 197 0.83 # 940 # 1881 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_3 - 314 HTH_17 PF12728.2 51 1.5e-05 14.4 0.1 2 3 0.044 0.31 0.6 0.0 37 47 240 250 232 251 0.90 # 940 # 1881 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_3 - 314 HTH_17 PF12728.2 51 1.5e-05 14.4 0.1 3 3 0.00018 0.0013 8.2 0.0 3 22 291 310 291 312 0.92 # 940 # 1881 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_4 - 436 DUF2813 PF11398.3 373 3e-06 15.6 0.2 1 2 3.2e-05 0.00023 9.4 0.1 5 60 2 56 1 98 0.79 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_4 - 436 DUF2813 PF11398.3 373 3e-06 15.6 0.2 2 2 0.0016 0.011 3.8 0.0 286 302 332 348 325 379 0.75 # 1882 # 3189 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.363 1_2 - 95 HTH_Crp_2 PF13545.1 76 1.6e-05 13.9 0.0 1 1 4.2e-06 2.9e-05 13.1 0.0 20 45 35 60 3 63 0.87 # 464 # 748 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.519 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/2b47889f-a9b9-4162-ac2f-2e8a4532d7cc # Target file: checkm_output/bins/pm1471/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1471/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2b47889f-a9b9-4162-ac2f-2e8a4532d7cc checkm_output/bins/pm1471/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:44:02 2017 # [ok]