# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 215 Cons_hypoth95 PF03602.10 183 2.9e-05 16.2 0.0 1 2 0.00027 0.024 6.7 0.0 112 133 18 38 2 79 0.78 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_7 - 215 Cons_hypoth95 PF03602.10 183 2.9e-05 16.2 0.0 2 2 0.00015 0.013 7.6 0.0 42 60 163 181 145 191 0.83 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_43 - 873 ABC_tran PF00005.22 137 0.00018 14.5 0.1 1 1 1.3e-05 0.0012 11.9 0.0 14 42 489 517 483 621 0.82 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 DUF815 PF05673.8 250 0.0005 11.7 0.0 1 1 1.3e-05 0.0012 10.5 0.0 49 81 482 514 469 525 0.87 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_26 - 259 N6_Mtase PF02384.11 311 1.2e-10 33.7 0.1 1 2 0.037 3.2 -0.6 0.2 275 308 59 101 24 103 0.51 # 17154 # 17930 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_26 - 259 N6_Mtase PF02384.11 311 1.2e-10 33.7 0.1 2 2 5.6e-12 4.9e-10 31.6 0.0 24 117 135 236 123 250 0.83 # 17154 # 17930 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_43 - 873 FtsK_SpoIIIE PF01580.13 205 4.5e-05 15.7 0.0 1 1 1.2e-06 0.00011 14.5 0.0 33 63 479 511 472 514 0.90 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_59 - 787 MobB PF03205.9 140 0.00065 12.1 0.0 1 1 1.5e-05 0.0013 11.2 0.0 6 34 198 226 194 231 0.87 # 44413 # 46773 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_4 - 98 MarR PF01047.17 59 0.00056 12.4 0.0 1 1 1.1e-05 0.00098 11.6 0.0 8 47 16 57 12 58 0.79 # 2548 # 2841 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.517 1_60 - 1762 AAA_19 PF13245.1 76 1.7e-07 23.7 2.6 1 2 0.014 1.2 1.7 0.0 30 57 440 467 432 483 0.81 # 46770 # 52055 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_60 - 1762 AAA_19 PF13245.1 76 1.7e-07 23.7 2.6 2 2 2.4e-08 2.1e-06 20.2 0.2 10 71 967 1024 960 1029 0.71 # 46770 # 52055 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_1 - 281 CbiA PF01656.18 195 2.6e-23 75.2 0.0 1 1 4.2e-25 3.7e-23 74.6 0.0 1 158 6 194 6 227 0.83 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_7 - 215 MethyltransfD12 PF02086.10 260 0.00025 13.2 0.0 1 2 0.02 1.8 0.6 0.0 176 188 19 31 9 52 0.81 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_7 - 215 MethyltransfD12 PF02086.10 260 0.00025 13.2 0.0 2 2 2.5e-05 0.0022 10.2 0.0 12 46 153 189 147 197 0.79 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_63 - 248 Rep_3 PF01051.16 222 6e-48 156.0 0.0 1 1 7.7e-50 6.8e-48 155.8 0.0 3 222 16 244 14 244 0.91 # 54847 # 55590 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.450 1_72 - 150 Fe_dep_repress PF01325.14 60 0.00077 12.2 0.0 1 2 5.8e-05 0.0051 9.5 0.0 19 45 8 34 4 34 0.91 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_72 - 150 Fe_dep_repress PF01325.14 60 0.00077 12.2 0.0 2 2 0.077 6.8 -0.5 0.0 19 33 111 125 106 129 0.78 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_7 - 215 Methyltransf_26 PF13659.1 117 8e-13 41.2 0.2 1 2 5.6e-08 2.5e-06 20.3 0.0 55 114 5 71 2 74 0.81 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_7 - 215 Methyltransf_26 PF13659.1 117 8e-13 41.2 0.2 2 2 1.5e-07 6.4e-06 19.0 0.1 4 34 167 196 164 213 0.86 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_26 - 259 Methyltransf_26 PF13659.1 117 1.8e-05 17.5 0.0 1 1 9.2e-07 4e-05 16.4 0.0 6 62 171 234 168 250 0.79 # 17154 # 17930 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_60 - 1762 AAA_30 PF13604.1 196 4.1e-43 139.9 8.3 1 2 1.8e-05 0.0016 10.7 0.8 35 127 441 527 421 533 0.86 # 46770 # 52055 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_60 - 1762 AAA_30 PF13604.1 196 4.1e-43 139.9 8.3 2 2 1.2e-42 1e-40 132.1 1.4 2 186 951 1139 950 1143 0.93 # 46770 # 52055 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_72 - 150 HTH_Tnp_1 PF01527.15 76 0.00034 13.3 0.0 1 2 2.1e-05 0.0019 11.0 0.0 29 46 17 34 11 61 0.82 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_72 - 150 HTH_Tnp_1 PF01527.15 76 0.00034 13.3 0.0 2 2 0.068 6 -0.3 0.0 41 57 104 119 99 134 0.65 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_59 - 787 TraG-D_C PF12696.2 128 5e-20 64.4 0.0 1 1 1.4e-21 1.2e-19 63.2 0.0 1 128 426 549 426 549 0.85 # 44413 # 46773 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_1 - 281 MipZ PF09140.6 261 2.5e-07 22.7 0.0 1 2 3.8e-05 0.0034 9.2 0.0 2 40 5 43 4 54 0.89 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_1 - 281 MipZ PF09140.6 261 2.5e-07 22.7 0.0 2 2 7.6e-06 0.00067 11.5 0.0 72 127 100 155 85 158 0.87 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_7 - 215 UPF0020 PF01170.13 180 2.7e-07 23.0 0.1 1 2 0.00058 0.026 6.8 0.0 102 118 16 32 3 51 0.79 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_7 - 215 UPF0020 PF01170.13 180 2.7e-07 23.0 0.1 2 2 3.2e-06 0.00014 14.2 0.0 26 54 161 189 157 206 0.87 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_26 - 259 UPF0020 PF01170.13 180 0.00031 13.1 0.0 1 1 1.3e-05 0.00056 12.2 0.0 31 97 168 233 135 244 0.76 # 17154 # 17930 # 1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.510 1_2 - 386 KorB PF08535.5 93 4.5e-18 58.0 0.1 1 1 1.8e-19 7.9e-18 57.2 0.1 3 87 173 254 171 261 0.92 # 927 # 2084 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 682 KorB PF08535.5 93 0.00019 14.4 0.0 1 1 1.6e-05 0.00071 12.5 0.0 2 51 166 211 165 250 0.77 # 9117 # 11162 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.542 1_7 - 215 N6_N4_Mtase PF01555.13 231 2.5e-32 104.9 0.0 1 1 3.6e-32 3.2e-30 98.0 0.0 1 226 21 198 21 201 0.92 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_59 - 787 AAA_16 PF13191.1 185 2.1e-06 20.5 0.0 1 1 1.9e-07 8.2e-06 18.6 0.0 15 54 183 224 179 252 0.80 # 44413 # 46773 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_43 - 873 AAA_16 PF13191.1 185 6.5e-06 18.9 0.0 1 1 4.4e-07 1.9e-05 17.4 0.0 14 55 476 518 470 540 0.82 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 AAA_22 PF13401.1 131 6.2e-05 15.9 0.0 1 2 1.5e-05 0.0013 11.6 0.0 7 28 489 510 486 587 0.90 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 AAA_22 PF13401.1 131 6.2e-05 15.9 0.0 2 2 0.024 2.1 1.2 0.0 79 108 689 720 649 743 0.67 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 AAA_29 PF13555.1 62 0.0004 12.7 0.0 1 1 2.2e-05 0.002 10.5 0.0 25 43 488 506 475 514 0.80 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_60 - 1762 SRP54 PF00448.17 196 0.00014 14.0 0.1 1 2 0.00024 0.021 7.0 0.0 72 101 510 539 487 568 0.82 # 46770 # 52055 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_60 - 1762 SRP54 PF00448.17 196 0.00014 14.0 0.1 2 2 0.0023 0.2 3.8 0.0 3 20 969 986 967 1005 0.84 # 46770 # 52055 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_43 - 873 AAA_28 PF13521.1 163 0.00017 14.3 0.0 1 1 5.5e-06 0.00048 12.8 0.0 1 34 488 526 488 543 0.82 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_72 - 150 HTH_23 PF13384.1 50 0.00012 14.5 0.1 1 2 9.7e-06 0.00085 11.8 0.0 20 40 14 34 13 34 0.88 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_72 - 150 HTH_23 PF13384.1 50 0.00012 14.5 0.1 2 2 0.046 4.1 0.1 0.0 36 41 105 110 100 116 0.83 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_2 - 386 HTH_19 PF12844.2 64 0.00031 13.6 0.0 1 1 3e-05 0.0027 10.6 0.0 4 55 165 229 163 237 0.67 # 927 # 2084 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.522 1_7 - 215 Methyltransf_31 PF13847.1 152 0.00014 14.2 0.0 1 2 0.00035 0.03 6.6 0.0 72 112 19 74 4 119 0.68 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_7 - 215 Methyltransf_31 PF13847.1 152 0.00014 14.2 0.0 2 2 0.00061 0.053 5.8 0.0 3 36 163 193 161 197 0.83 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_60 - 1762 PhoH PF02562.11 205 8.1e-05 14.6 0.5 1 1 2.1e-06 0.00019 13.4 0.5 4 65 950 1015 947 1029 0.84 # 46770 # 52055 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_59 - 787 TrwB_AAD_bind PF10412.4 386 4.3e-142 465.9 0.0 1 1 1.3e-143 5.7e-142 465.5 0.0 2 386 179 568 178 568 0.99 # 44413 # 46773 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_43 - 873 TrwB_AAD_bind PF10412.4 386 3e-07 22.0 0.3 1 2 2.5e-08 1.1e-06 20.2 0.0 16 71 487 548 478 552 0.89 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 TrwB_AAD_bind PF10412.4 386 3e-07 22.0 0.3 2 2 0.078 3.4 -1.2 0.1 240 311 693 767 666 794 0.67 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 281 TIGR01968 TIGR01968 261 1.4e-10 33.3 0.0 1 2 6e-10 5.3e-08 24.9 0.0 1 39 3 41 3 44 0.96 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_1 - 281 TIGR01968 TIGR01968 261 1.4e-10 33.3 0.0 2 2 0.00026 0.023 6.4 0.0 105 120 120 135 103 193 0.82 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_69 - 421 IMS_HHH PF11798.3 32 4e-06 19.5 0.0 1 1 1.5e-07 1.4e-05 17.8 0.0 3 32 170 199 167 199 0.86 # 60887 # 62149 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.539 1_7 - 215 Methyltransf_15 PF09445.5 164 0.00018 13.8 0.0 1 2 0.036 3.2 -0.0 0.0 53 79 4 29 2 33 0.91 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_7 - 215 Methyltransf_15 PF09445.5 164 0.00018 13.8 0.0 2 2 1.2e-05 0.0011 11.3 0.0 3 30 166 193 164 203 0.91 # 5645 # 6289 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.612 1_43 - 873 DUF87 PF01935.12 229 5.4e-06 19.1 0.0 1 1 2.8e-07 2.5e-05 16.9 0.0 28 162 491 617 488 680 0.67 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_72 - 150 HTH_28 PF13518.1 52 2e-05 17.3 0.3 1 2 1.5e-06 0.00013 14.7 0.0 14 35 13 34 5 35 0.84 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_72 - 150 HTH_28 PF13518.1 52 2e-05 17.3 0.3 2 2 0.058 5.1 0.0 0.1 29 36 103 110 99 113 0.78 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_4 - 98 HTH_24 PF13412.1 48 0.00056 12.1 0.0 1 1 9.5e-06 0.00083 11.5 0.0 22 47 32 57 26 58 0.87 # 2548 # 2841 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.517 1_43 - 873 DUF2075 PF09848.4 352 0.00041 12.1 0.2 1 2 0.00021 0.019 6.6 0.0 4 25 489 510 487 532 0.84 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 DUF2075 PF09848.4 352 0.00041 12.1 0.2 2 2 0.0029 0.25 2.9 0.0 80 117 693 726 669 799 0.74 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_60 - 1762 UvrD_C_2 PF13538.1 104 1.9e-08 27.2 0.2 1 1 1.3e-09 1.1e-07 24.7 0.1 4 102 1320 1423 1309 1425 0.67 # 46770 # 52055 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_43 - 873 T2SE PF00437.15 272 0.00058 11.5 0.0 1 1 1.2e-05 0.001 10.6 0.0 116 153 477 511 395 524 0.69 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 NACHT PF05729.7 166 0.00052 12.4 0.1 1 2 0.011 1 1.7 0.0 104 140 74 112 40 153 0.69 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 NACHT PF05729.7 166 0.00052 12.4 0.1 2 2 0.00014 0.012 8.0 0.1 3 24 489 510 488 517 0.88 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 AAA_17 PF13207.1 121 0.00032 14.3 0.0 1 1 1.1e-05 0.00099 12.7 0.0 2 32 489 524 488 619 0.79 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 AAA_25 PF13481.1 194 0.00017 13.7 0.0 1 2 1.7e-05 0.0015 10.7 0.0 36 61 489 515 484 545 0.81 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_43 - 873 AAA_25 PF13481.1 194 0.00017 13.7 0.0 2 2 0.048 4.2 -0.6 0.0 144 186 698 737 655 743 0.79 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 281 VirC1 PF07015.6 231 2.9e-07 22.5 0.1 1 2 1.2e-06 0.0001 14.1 0.1 2 41 4 43 3 50 0.88 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_1 - 281 VirC1 PF07015.6 231 2.9e-07 22.5 0.1 2 2 0.00028 0.025 6.3 0.0 82 132 125 178 109 202 0.83 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_72 - 150 CENP-B_N PF04218.8 53 0.00072 11.7 0.0 1 1 1.3e-05 0.0012 11.1 0.0 19 44 7 33 1 35 0.85 # 63658 # 64107 # -1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_59 - 787 T4SS-DNA_transf PF02534.9 469 3.6e-13 41.5 0.0 1 1 1.4e-14 1.2e-12 39.8 0.0 178 453 298 576 259 600 0.80 # 44413 # 46773 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_43 - 873 RNA_helicase PF00910.17 107 0.00055 12.9 0.0 1 1 1.9e-05 0.0017 11.3 0.0 1 37 489 531 489 560 0.76 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_4 - 98 HTH_Crp_2 PF13545.1 76 0.00036 13.1 0.0 1 1 5.1e-06 0.00045 12.8 0.0 36 60 35 59 13 82 0.80 # 2548 # 2841 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.517 1_43 - 873 AAA_10 PF12846.2 304 3.5e-49 160.5 0.0 1 1 1.2e-50 5.3e-49 159.9 0.0 1 290 486 768 486 776 0.86 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_59 - 787 AAA_10 PF12846.2 304 1.3e-11 37.1 0.0 1 1 1.2e-12 5.4e-11 35.1 0.0 3 301 194 506 193 509 0.72 # 44413 # 46773 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_43 - 873 Septin PF00735.13 281 0.00065 11.4 0.2 1 1 1.6e-05 0.0014 10.4 0.2 3 30 485 512 483 520 0.90 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_1 - 281 AAA_31 PF13614.1 157 1.9e-08 27.1 0.0 1 2 9e-06 0.00079 12.1 0.0 2 38 5 41 4 53 0.92 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_1 - 281 AAA_31 PF13614.1 157 1.9e-08 27.1 0.0 2 2 4.7e-06 0.00041 13.0 0.0 89 154 95 162 76 164 0.77 # 80 # 922 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_43 - 873 IstB_IS21 PF01695.12 178 0.00045 12.4 0.0 1 1 1.2e-05 0.001 11.2 0.0 46 73 485 512 470 522 0.85 # 28204 # 30822 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_88 - 92 SSB PF00436.20 104 6.3e-08 25.2 0.1 1 1 7.7e-10 6.8e-08 25.1 0.1 2 95 2 86 1 92 0.81 # 75411 # 75686 # 1 # ID=1_88;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.467 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ab321bef-ff2f-4fd8-bcfb-840093a18230 # Target file: checkm_output/bins/pm1468/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1468/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ab321bef-ff2f-4fd8-bcfb-840093a18230 checkm_output/bins/pm1468/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:44:00 2017 # [ok]