# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 143 Ribosomal_L11 PF00298.14 69 1.2e-32 103.4 2.2 1 1 6.3e-34 2.3e-32 102.5 2.2 1 69 72 140 72 140 0.99 # 10940 # 11368 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_22 - 260 FMN_dh PF01070.13 357 1.3e-06 18.8 0.2 1 1 5.9e-08 2.1e-06 18.2 0.2 268 315 165 210 157 220 0.84 # 27437 # 28216 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_3 - 321 BPL_LplA_LipB PF03099.14 125 4e-24 76.5 0.0 1 1 1.6e-25 5.9e-24 76.0 0.0 3 125 85 208 83 208 0.89 # 4628 # 5590 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 1_14 - 1343 RNA_pol_Rpb2_1 PF04563.10 203 7.7e-28 88.2 0.0 1 1 4.3e-29 1.5e-27 87.2 0.0 2 203 27 509 26 509 0.98 # 13667 # 17695 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_24 - 250 ThiF PF00899.16 136 2.2e-44 142.0 0.0 1 1 1.3e-45 4.7e-44 141.0 0.0 2 134 29 160 28 162 0.98 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_24 - 250 2-Hacid_dh_C PF02826.14 178 6.3e-06 16.9 0.2 1 2 2e-05 0.00073 10.2 0.0 31 65 24 58 6 83 0.80 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_24 - 250 2-Hacid_dh_C PF02826.14 178 6.3e-06 16.9 0.2 2 2 0.00099 0.036 4.7 0.1 79 116 107 143 83 148 0.78 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_22 - 260 NanE PF04131.9 192 1.5e-05 15.5 0.2 1 1 1e-06 3.6e-05 14.2 0.2 140 178 171 209 162 225 0.85 # 27437 # 28216 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_24 - 250 NAD_binding_7 PF13241.1 103 9.6e-06 17.3 0.0 1 1 5.2e-07 1.9e-05 16.4 0.0 4 86 26 145 25 150 0.69 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_4 - 317 PRK PF00485.13 194 4.2e-17 53.7 0.0 1 1 1.7e-18 6.2e-17 53.2 0.0 1 148 90 244 90 251 0.87 # 5636 # 6586 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.458 1_34 - 428 ATP-grasp_2 PF08442.5 202 4.6e-05 14.3 0.0 1 1 2e-06 7.3e-05 13.7 0.0 8 81 109 177 106 212 0.80 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 428 ATPgrasp_Ter PF15632.1 330 7.3e-10 29.4 0.0 1 2 1.9e-10 7e-09 26.2 0.0 53 223 38 207 18 213 0.78 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 428 ATPgrasp_Ter PF15632.1 330 7.3e-10 29.4 0.0 2 2 0.015 0.53 0.3 0.0 268 281 278 291 265 293 0.90 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_22 - 260 His_biosynth PF00977.16 229 1.5e-07 22.3 0.0 1 2 0.089 3.2 -1.7 0.0 97 127 11 41 7 60 0.81 # 27437 # 28216 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_22 - 260 His_biosynth PF00977.16 229 1.5e-07 22.3 0.0 2 2 1.4e-08 5.1e-07 20.6 0.0 60 106 162 208 155 222 0.85 # 27437 # 28216 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_10 - 143 Ribosomal_L11_N PF03946.9 60 9.8e-35 109.4 0.2 1 1 4.5e-36 1.6e-34 108.7 0.2 1 60 8 67 8 67 0.99 # 10940 # 11368 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.501 1_25 - 213 TMP-TENI PF02581.12 180 5.4e-59 189.8 0.2 1 1 1.8e-60 6.6e-59 189.5 0.2 3 180 19 191 17 191 0.96 # 29169 # 29807 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_7 - 395 GTP_EFTU_D2 PF03144.20 74 3.4e-20 63.5 7.1 1 1 1.8e-21 6.4e-20 62.6 6.4 1 74 225 294 225 294 0.96 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_13 - 122 Ribosomal_L12 PF00542.14 68 5.3e-34 107.6 7.8 1 1 2.8e-35 9.9e-34 106.7 7.8 1 68 54 121 54 121 0.99 # 12967 # 13332 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_22 - 260 IMPDH PF00478.20 352 0.00013 12.4 0.2 1 1 5.5e-06 0.0002 11.7 0.2 208 244 172 208 168 216 0.89 # 27437 # 28216 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_7 - 395 TIGR01394 TIGR01394 594 5.3e-31 98.5 0.1 1 1 1.8e-32 6.4e-31 98.2 0.1 3 268 14 273 12 305 0.79 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_14 - 1343 RNA_pol_Rpb2_7 PF04560.15 82 9.1e-35 110.4 0.1 1 1 1e-35 3.8e-34 108.4 0.1 1 81 1266 1341 1266 1342 0.98 # 13667 # 17695 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_34 - 428 ATP-grasp_3 PF02655.9 161 7.7e-10 30.3 0.0 1 1 4e-11 1.4e-09 29.4 0.0 3 159 104 292 103 294 0.75 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_28 - 265 zf-NADH-PPase PF09297.6 32 1.2e-10 32.3 10.1 1 1 3.2e-12 1.2e-10 32.3 10.1 1 32 102 133 102 133 0.98 # 32597 # 33391 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_21 - 378 TIGR00510 TIGR00510 302 6e-05 13.6 0.0 1 2 4.5e-06 0.00016 12.1 0.0 67 195 80 208 70 229 0.81 # 26304 # 27437 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.572 1_21 - 378 TIGR00510 TIGR00510 302 6e-05 13.6 0.0 2 2 0.089 3.2 -2.0 0.0 91 109 344 362 339 365 0.83 # 26304 # 27437 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.572 1_7 - 395 AAA_29 PF13555.1 62 0.00017 12.6 0.3 1 1 1.3e-05 0.00046 11.2 0.0 28 55 17 47 2 53 0.75 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_34 - 428 CPSase_L_D2 PF02786.12 211 1.2e-09 29.1 0.0 1 1 6.1e-11 2.2e-09 28.3 0.0 9 179 112 290 104 295 0.78 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_24 - 250 adh_short PF00106.20 167 0.00024 12.5 1.5 1 1 1.3e-05 0.00045 11.6 1.5 2 55 31 81 30 155 0.63 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_28 - 265 A2L_zn_ribbon PF08792.5 33 0.003 8.6 4.6 1 1 7.2e-05 0.0026 8.8 2.5 4 27 105 128 102 130 0.91 # 32597 # 33391 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_13 - 122 DUF1933 PF09147.5 201 0.00022 12.1 0.1 1 1 6.3e-06 0.00023 12.1 0.1 74 130 15 72 4 113 0.85 # 12967 # 13332 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_15 - 1407 RNA_pol_Rpb1_5 PF04998.12 277 4.2e-82 266.9 0.6 1 1 2.1e-83 7.4e-82 266.1 0.1 1 276 766 1321 766 1322 1.00 # 17814 # 22034 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 1_13 - 122 TIGR00855 TIGR00855 125 1.5e-48 155.5 16.8 1 1 4.8e-50 1.7e-48 155.3 16.8 1 125 1 121 1 121 0.95 # 12967 # 13332 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.473 1_2 - 346 MurB_C PF02873.11 105 3e-42 134.2 0.0 1 1 1.7e-43 6.2e-42 133.2 0.0 2 105 207 333 206 333 0.98 # 3594 # 4631 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.499 1_19 - 260 BetR PF08667.5 147 2.8e-12 38.3 0.0 1 1 2.2e-13 8e-12 36.8 0.0 7 64 8 65 3 135 0.97 # 24378 # 25157 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.445 1_24 - 250 Saccharop_dh PF03435.13 386 2.9e-07 21.2 0.0 1 1 1.2e-08 4.4e-07 20.6 0.0 2 116 33 190 32 195 0.92 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_11 - 235 Ribosomal_L1 PF00687.16 220 9.5e-52 166.9 0.1 1 1 3.1e-53 1.1e-51 166.7 0.1 14 219 32 220 9 221 0.92 # 11372 # 12076 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.519 1_34 - 428 RimK PF08443.6 190 9.1e-06 16.7 0.0 1 1 4e-07 1.4e-05 16.1 0.0 3 110 104 214 102 246 0.75 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_24 - 250 ApbA PF02558.11 151 7.1e-05 13.8 0.0 1 1 2.7e-06 9.9e-05 13.3 0.0 2 38 33 71 32 139 0.74 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_15 - 1407 RNA_pol_Rpb1_2 PF00623.15 166 8.5e-54 173.4 0.1 1 1 6.9e-54 2.5e-52 168.6 0.0 1 166 344 486 344 486 0.95 # 17814 # 22034 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 1_7 - 395 TIGR00503 TIGR00503 527 1.7e-14 44.2 0.0 1 1 6.6e-16 2.4e-14 43.7 0.0 13 162 14 156 3 178 0.82 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_4 - 317 AAA_18 PF13238.1 129 1.9e-06 19.7 0.0 1 1 2.8e-07 1e-05 17.4 0.0 1 56 91 141 91 244 0.48 # 5636 # 6586 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.458 1_15 - 1407 RNA_pol_Rpb1_3 PF04983.13 158 5.7e-30 95.6 0.0 1 1 3.8e-31 1.4e-29 94.4 0.0 1 158 489 644 489 644 0.94 # 17814 # 22034 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 1_7 - 395 GTP_EFTU_D4 PF14578.1 81 7e-08 23.6 3.8 1 2 3.8e-09 1.4e-07 22.6 2.2 8 79 214 293 209 294 0.86 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_7 - 395 GTP_EFTU_D4 PF14578.1 81 7e-08 23.6 3.8 2 2 0.091 3.3 -1.0 0.0 53 68 347 362 343 373 0.77 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_15 - 1407 RNA_pol_Rpb1_1 PF04997.7 337 1.1e-102 335.1 0.0 1 1 7e-104 2.5e-102 334.0 0.0 2 337 15 342 14 342 0.95 # 17814 # 22034 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 1_22 - 260 ThiG PF05690.9 247 1.7e-110 359.3 0.9 1 1 5.4e-112 2e-110 359.1 0.9 1 247 3 247 3 247 0.99 # 27437 # 28216 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_14 - 1343 RNA_pol_Rpb2_6 PF00562.23 386 7.3e-165 539.7 0.2 1 2 5.2e-05 0.0019 8.4 0.0 2 33 663 694 662 700 0.88 # 13667 # 17695 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_14 - 1343 RNA_pol_Rpb2_6 PF00562.23 386 7.3e-165 539.7 0.2 2 2 3.4e-163 1.2e-161 529.1 0.3 2 386 716 1264 715 1264 0.99 # 13667 # 17695 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_35 - 530 AICARFT_IMPCHas PF01808.13 315 8.7e-144 469.7 6.3 1 1 3e-145 1.1e-143 469.4 6.3 1 315 137 461 137 461 0.99 # 38378 # 39967 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_24 - 250 Shikimate_DH PF01488.15 135 1.7e-05 16.4 0.0 1 1 6.8e-07 2.5e-05 15.9 0.0 8 108 25 126 20 145 0.81 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_30 - 229 Endonuclease_5 PF04493.9 206 2.6e-68 220.9 0.0 1 1 8.5e-70 3.1e-68 220.6 0.0 8 204 17 208 10 210 0.96 # 34506 # 35192 # 1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.607 1_14 - 1343 RNA_pol_Rpb2_2 PF04561.9 190 1.6e-28 90.9 0.3 1 2 1.7e-11 6e-10 30.3 0.0 1 72 151 223 151 281 0.82 # 13667 # 17695 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_14 - 1343 RNA_pol_Rpb2_2 PF04561.9 190 1.6e-28 90.9 0.3 2 2 7.3e-20 2.6e-18 57.5 0.1 76 190 336 454 326 454 0.89 # 13667 # 17695 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_7 - 395 MMR_HSR1 PF01926.18 116 9.2e-08 23.6 0.0 1 1 5.4e-09 1.9e-07 22.5 0.0 2 114 15 134 14 137 0.71 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_34 - 428 Dala_Dala_lig_C PF07478.8 203 0.00023 12.0 0.0 1 1 1.1e-05 0.00039 11.3 0.0 6 95 116 207 111 218 0.74 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_12 - 166 NAD_binding_2 PF03446.10 163 0.00011 13.5 0.2 1 1 5e-06 0.00018 12.8 0.2 16 115 1 106 1 111 0.78 # 12407 # 12904 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.512 1_7 - 395 Miro PF08477.8 119 4.7e-06 18.6 0.0 1 1 2.8e-07 1e-05 17.5 0.0 2 119 15 139 14 139 0.79 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_14 - 1343 RNA_pol_Rpb2_3 PF04565.11 68 1.7e-32 102.5 0.0 1 1 1.2e-33 4.4e-32 101.2 0.0 1 68 513 582 513 582 0.98 # 13667 # 17695 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_4 - 317 AAA_17 PF13207.1 121 2.5e-06 19.8 0.0 1 1 1.5e-07 5.2e-06 18.8 0.0 1 100 90 233 90 264 0.51 # 5636 # 6586 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.458 1_28 - 265 DZR PF12773.2 50 8.3e-05 13.9 3.8 1 1 4.1e-06 0.00015 13.1 3.8 11 46 103 139 98 140 0.86 # 32597 # 33391 # 1 # ID=1_28;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_14 - 1343 RNA_pol_Rpb2_45 PF10385.4 66 1.4e-30 96.5 0.0 1 1 2.8e-31 1e-29 93.7 0.1 1 66 591 656 591 656 1.00 # 13667 # 17695 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_34 - 428 GARS_A PF01071.14 194 3.4e-88 285.7 0.1 1 1 1.2e-89 4.4e-88 285.4 0.1 1 194 103 296 103 296 0.99 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_15 - 1407 RNA_pol_Rpb1_4 PF05000.12 108 1.1e-21 68.2 0.1 1 1 8.2e-23 3e-21 66.7 0.1 2 107 674 763 673 764 0.85 # 17814 # 22034 # 1 # ID=1_15;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 1_34 - 428 ATP-grasp PF02222.17 172 5.8e-07 20.5 0.0 1 1 2.6e-08 9.5e-07 19.8 0.0 2 85 113 202 112 223 0.84 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_23 - 67 ThiS-like PF14453.1 57 0.00026 12.4 0.0 1 2 0.00018 0.0065 7.9 0.0 1 25 1 25 1 29 0.90 # 28218 # 28418 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_23 - 67 ThiS-like PF14453.1 57 0.00026 12.4 0.0 2 2 0.0081 0.29 2.6 0.0 42 54 48 60 46 62 0.85 # 28218 # 28418 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_23 - 67 ThiS PF02597.15 77 3.5e-17 54.2 0.0 1 1 1.1e-18 4.1e-17 53.9 0.0 2 77 4 66 3 66 0.91 # 28218 # 28418 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_7 - 395 TIGR03594 TIGR03594 432 0.0003 11.0 0.0 1 1 2.9e-05 0.001 9.2 0.0 248 320 89 162 1 180 0.66 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_9 - 182 TIGR00922 TIGR00922 172 4.9e-73 235.7 0.1 1 1 1.5e-74 5.4e-73 235.6 0.1 1 171 9 180 9 181 0.97 # 10232 # 10777 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_34 - 428 GARS_N PF02844.10 100 5.1e-40 127.5 0.1 1 1 2.8e-41 1e-39 126.6 0.1 1 100 1 102 1 102 0.96 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_3 - 321 HTH_11 PF08279.7 55 1.5e-13 41.7 0.0 1 1 1.1e-14 3.9e-13 40.4 0.0 4 54 9 58 8 59 0.93 # 4628 # 5590 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.508 1_35 - 530 CoA_binding_2 PF13380.1 116 0.00073 11.2 3.3 1 2 0.029 1.1 1.0 0.2 69 109 328 366 318 369 0.83 # 38378 # 39967 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_35 - 530 CoA_binding_2 PF13380.1 116 0.00073 11.2 3.3 2 2 9.5e-05 0.0034 9.0 0.0 73 106 486 520 482 523 0.84 # 38378 # 39967 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.585 1_34 - 428 ATP-grasp_4 PF13535.1 184 5.8e-16 50.2 0.0 1 1 3.1e-17 1.1e-15 49.3 0.0 5 180 105 292 103 294 0.78 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_24 - 250 DAO PF01266.19 358 0.00033 11.0 1.0 1 2 4.4e-05 0.0016 8.8 0.7 2 35 32 65 31 123 0.76 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_24 - 250 DAO PF01266.19 358 0.00033 11.0 1.0 2 2 0.016 0.57 0.4 0.0 190 233 130 169 108 188 0.77 # 28415 # 29164 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_12 - 166 Ribosomal_L10 PF00466.15 100 2.8e-30 95.7 0.0 1 1 1.1e-31 4e-30 95.3 0.0 3 100 5 101 3 101 0.98 # 12407 # 12904 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.512 1_4 - 317 CoaE PF01121.15 180 0.00019 12.3 0.2 1 1 8.3e-06 0.0003 11.7 0.2 1 23 89 111 89 115 0.91 # 5636 # 6586 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.458 1_21 - 378 TIGR00433 TIGR00433 296 1.6e-13 41.7 0.0 1 1 6.5e-15 2.3e-13 41.1 0.0 7 249 54 301 49 325 0.81 # 26304 # 27437 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.572 1_8 - 128 SecE PF00584.15 57 5.9e-24 75.0 1.0 1 3 0.017 0.63 1.2 0.1 29 39 22 32 15 36 0.72 # 9847 # 10230 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_8 - 128 SecE PF00584.15 57 5.9e-24 75.0 1.0 2 3 0.051 1.8 -0.2 2.0 31 38 48 55 43 63 0.46 # 9847 # 10230 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_8 - 128 SecE PF00584.15 57 5.9e-24 75.0 1.0 3 3 1.6e-25 5.9e-24 75.0 1.0 2 56 68 122 67 123 0.97 # 9847 # 10230 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.552 1_34 - 428 GARS_C PF02843.11 93 1.7e-32 103.0 0.1 1 1 2e-33 7.2e-32 101.0 0.0 2 92 331 422 330 423 0.97 # 37046 # 38329 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_7 - 395 GTP_EFTU PF00009.22 188 1.4e-62 201.9 0.0 1 1 5.3e-64 1.9e-62 201.5 0.0 1 187 10 201 10 202 0.94 # 8404 # 9588 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_9 - 182 KOW PF00467.24 32 6.7e-11 33.1 0.0 1 1 1e-11 3.7e-10 30.8 0.0 1 29 130 162 130 165 0.87 # 10232 # 10777 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/3fd25582-af62-4541-b32f-b7f00f3d952d # Target file: checkm_output/bins/pm1467/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1467/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3fd25582-af62-4541-b32f-b7f00f3d952d checkm_output/bins/pm1467/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:43:58 2017 # [ok]