# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_38 - 96 HTH_IclR PF09339.5 52 0.00046 12.0 0.1 1 1 1.4e-05 0.00079 11.2 0.1 5 38 31 66 28 66 0.82 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_18 - 429 Fe-ADH_2 PF13685.1 250 3.3e-05 15.4 0.1 1 1 9.1e-07 5.3e-05 14.7 0.1 74 109 94 131 43 139 0.73 # 26529 # 27815 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.564 1_38 - 96 HTH_38 PF13936.1 44 4.2e-05 15.2 0.1 1 1 1.1e-06 6.2e-05 14.7 0.1 11 39 36 65 30 66 0.89 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_38 - 96 MarR PF01047.17 59 2.7e-05 16.0 0.0 1 1 6.7e-07 3.9e-05 15.5 0.0 7 37 36 66 30 66 0.83 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_48 - 203 Pou PF00157.12 75 0.00038 12.3 0.0 1 1 1.3e-05 0.00077 11.3 0.0 9 35 5 31 2 36 0.85 # 45276 # 45884 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 1_1 - 388 CbiA PF01656.18 195 1.2e-30 98.4 0.0 1 1 2.8e-32 1.6e-30 98.1 0.0 1 174 109 320 109 340 0.79 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_23 - 67 zf-ribbon_3 PF13248.1 26 0.00041 11.7 9.4 1 2 0.00036 0.021 6.3 0.1 19 26 6 13 3 13 0.83 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_23 - 67 zf-ribbon_3 PF13248.1 26 0.00041 11.7 9.4 2 2 4e-05 0.0023 9.4 1.7 4 21 33 49 30 49 0.89 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_45 - 203 TIGR00573 TIGR00573 217 2.2e-18 58.3 0.1 1 1 3.3e-19 1.9e-17 55.3 0.1 9 103 21 111 16 200 0.74 # 43239 # 43847 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_34 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.7 0.1 1 2 3e-13 1.8e-11 36.3 0.0 51 116 9 82 3 83 0.84 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_34 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.7 0.1 2 2 2.5e-06 0.00014 14.0 0.0 1 35 309 342 309 351 0.91 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_1 - 388 MipZ PF09140.6 261 0.0003 12.0 0.1 1 2 8.1e-05 0.0047 8.1 0.0 4 47 110 153 107 165 0.87 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 MipZ PF09140.6 261 0.0003 12.0 0.1 2 2 0.0065 0.38 1.8 0.0 87 126 223 262 198 349 0.72 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_34 - 354 UPF0020 PF01170.13 180 3.3e-05 15.6 0.2 1 2 3.3e-05 0.0019 9.9 0.0 89 116 12 38 1 52 0.68 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_34 - 354 UPF0020 PF01170.13 180 3.3e-05 15.6 0.2 2 2 0.003 0.17 3.5 0.0 26 49 306 328 299 347 0.81 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_23 - 67 zinc-ribbons_6 PF07191.7 70 0.0019 10.2 5.9 1 2 0.00013 0.0077 8.2 0.6 18 35 4 21 2 24 0.90 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_23 - 67 zinc-ribbons_6 PF07191.7 70 0.0019 10.2 5.9 2 2 0.0014 0.083 4.9 0.6 16 35 30 49 25 54 0.77 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_38 - 96 Sigma70_r4 PF04545.11 50 9.7e-05 13.8 0.0 1 1 2.5e-06 0.00014 13.3 0.0 9 41 31 67 28 71 0.84 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_23 - 67 Ribosomal_L28 PF00830.14 61 0.013 7.6 6.2 1 2 0.0094 0.54 2.4 0.6 2 24 5 28 4 31 0.75 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_23 - 67 Ribosomal_L28 PF00830.14 61 0.013 7.6 6.2 2 2 0.00011 0.0066 8.5 0.7 2 26 33 57 32 59 0.85 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_38 - 96 HTH_37 PF13744.1 80 1.6e-12 39.3 0.0 1 1 3.3e-14 1.9e-12 39.0 0.0 18 78 33 92 23 94 0.94 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_49 - 1325 Herpes_ori_bp PF02399.10 824 1.1e-08 25.6 0.0 1 2 1.8e-08 1.1e-06 19.0 0.0 44 198 521 675 493 685 0.80 # 46135 # 50109 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_49 - 1325 Herpes_ori_bp PF02399.10 824 1.1e-08 25.6 0.0 2 2 0.00051 0.03 4.3 0.0 271 351 721 812 699 816 0.76 # 46135 # 50109 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 1_6 - 276 HTH_27 PF13463.1 68 6.1e-05 15.5 0.0 1 2 7.2e-06 0.00042 12.8 0.0 8 51 13 56 8 61 0.90 # 17493 # 18320 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_6 - 276 HTH_27 PF13463.1 68 6.1e-05 15.5 0.0 2 2 0.069 4 0.1 0.0 15 37 174 197 159 213 0.72 # 17493 # 18320 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_34 - 354 N6_N4_Mtase PF01555.13 231 8.3e-44 141.9 0.0 1 1 5.1e-45 3e-43 140.1 0.0 2 229 30 346 29 348 0.87 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_47 - 76 P22_Cro PF14549.1 60 1.2e-22 71.6 0.0 1 1 2.3e-24 1.3e-22 71.5 0.0 1 56 8 65 8 71 0.93 # 44986 # 45213 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.504 1_1 - 388 MerR_1 PF13411.1 69 7.4e-06 17.9 0.0 1 1 4.8e-07 2.8e-05 16.0 0.0 3 46 42 90 41 93 0.76 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_48 - 203 HTH_25 PF13413.1 62 6.1e-08 24.4 0.0 1 1 3.8e-09 1.1e-07 23.6 0.0 1 35 11 45 11 49 0.96 # 45276 # 45884 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 1_38 - 96 HTH_25 PF13413.1 62 2.3e-05 16.2 0.0 1 1 1.6e-06 4.7e-05 15.2 0.0 1 32 37 68 37 73 0.94 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_1 - 388 HTH_AraC PF00165.18 42 0.00024 13.1 0.0 1 1 8e-06 0.00047 12.2 0.0 5 30 36 61 33 62 0.87 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_21 - 570 Terminase_1 PF03354.10 477 1.1e-111 365.7 0.0 1 1 2.1e-113 1.2e-111 365.5 0.0 1 476 82 554 82 555 0.92 # 30282 # 31991 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.502 1_23 - 67 A2L_zn_ribbon PF08792.5 33 0.00022 12.9 2.3 1 2 0.00041 0.012 7.4 0.2 1 11 1 11 1 13 0.83 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_23 - 67 A2L_zn_ribbon PF08792.5 33 0.00022 12.9 2.3 2 2 0.0018 0.052 5.3 0.2 5 11 33 39 29 41 0.81 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_27 - 403 A2L_zn_ribbon PF08792.5 33 0.0098 7.6 6.0 1 1 0.00067 0.019 6.7 6.0 5 31 333 360 331 361 0.93 # 35338 # 36546 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.516 1_38 - 96 HTH_3 PF01381.17 55 2.4e-13 41.9 0.1 1 1 2e-14 3.8e-13 41.3 0.1 1 49 38 86 38 91 0.94 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_48 - 203 HTH_3 PF01381.17 55 6.9e-13 40.5 0.0 1 1 5.7e-14 1.1e-12 39.8 0.0 1 55 12 66 12 66 0.98 # 45276 # 45884 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 1_1 - 388 HTH_3 PF01381.17 55 4e-05 15.6 0.0 1 1 4.8e-06 9.4e-05 14.4 0.0 13 39 43 69 32 70 0.87 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_38 - 96 HTH_23 PF13384.1 50 2.5e-05 16.0 0.0 1 1 1.2e-06 7e-05 14.6 0.0 9 36 33 65 26 67 0.80 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_38 - 96 HTH_19 PF12844.2 64 2.8e-11 35.5 0.0 1 1 1.4e-12 4.1e-11 35.0 0.0 2 55 36 89 35 92 0.91 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_48 - 203 HTH_19 PF12844.2 64 9.8e-09 27.4 0.0 1 1 5.3e-10 1.5e-08 26.8 0.0 1 49 9 57 9 72 0.85 # 45276 # 45884 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 1_35 - 77 FeoC PF09012.5 69 9.3e-05 14.3 0.0 1 1 4.6e-06 0.00013 13.8 0.0 5 39 18 52 16 59 0.92 # 40203 # 40433 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_6 - 276 FeoC PF09012.5 69 0.00012 14.0 0.0 1 1 9.6e-06 0.00028 12.8 0.0 11 47 20 56 11 87 0.84 # 17493 # 18320 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_27 - 403 OrfB_Zn_ribbon PF07282.6 69 1.8e-26 83.8 0.7 1 1 3.1e-28 1.8e-26 83.8 0.7 1 67 304 371 304 373 0.98 # 35338 # 36546 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.516 1_23 - 67 TIGR00595 TIGR00595 509 0.00018 11.9 4.9 1 1 3.4e-06 0.0002 11.8 4.9 216 264 3 52 1 58 0.87 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_1 - 388 TIGR01968 TIGR01968 261 5.5e-08 24.2 0.1 1 2 2.2e-05 0.0013 9.9 0.0 3 37 108 142 106 145 0.93 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 TIGR01968 TIGR01968 261 5.5e-08 24.2 0.1 2 2 4.6e-06 0.00027 12.1 0.1 102 143 225 265 220 275 0.83 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_45 - 203 TIGR01406 TIGR01406 231 3.9e-15 47.9 0.0 1 1 8.1e-17 4.7e-15 47.6 0.0 2 99 21 112 20 192 0.89 # 43239 # 43847 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_38 - 96 HTH_24 PF13412.1 48 5.5e-07 21.1 0.0 1 1 3.4e-08 9.8e-07 20.3 0.0 8 36 37 65 31 66 0.93 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_35 - 77 HTH_24 PF13412.1 48 2.5e-05 15.8 0.0 1 1 1.2e-06 3.4e-05 15.4 0.0 14 40 24 50 20 52 0.84 # 40203 # 40433 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_34 - 354 TIGR03534 TIGR03534 253 0.00022 12.5 0.2 1 1 1.4e-05 0.00082 10.7 0.1 136 173 6 47 1 102 0.74 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_27 - 403 TIGR00344 TIGR00344 847 6e-06 16.5 1.1 1 1 1.5e-07 8.8e-06 15.9 1.1 684 778 185 276 169 293 0.78 # 35338 # 36546 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.516 1_38 - 96 HTH_31 PF13560.1 64 1.5e-12 39.7 0.0 1 1 1e-13 2e-12 39.4 0.0 4 57 36 88 33 92 0.94 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_48 - 203 HTH_31 PF13560.1 64 1.4e-09 30.3 0.1 1 1 1.2e-10 2.3e-09 29.5 0.1 3 55 9 60 8 65 0.92 # 45276 # 45884 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.489 1_1 - 388 HTH_31 PF13560.1 64 9e-06 18.0 0.0 1 1 2.8e-06 5.5e-05 15.5 0.0 8 46 33 70 31 73 0.88 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_27 - 403 HTH_OrfB_IS605 PF12323.3 46 1.3e-16 51.9 1.2 1 1 4.6e-18 2.7e-16 50.9 1.2 1 46 1 48 1 48 0.94 # 35338 # 36546 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.516 1_5 - 198 Lambda_tail_I PF06805.7 82 4.9e-20 63.4 0.0 1 1 1.4e-21 7.8e-20 62.7 0.0 1 82 4 89 4 89 0.99 # 16883 # 17476 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.481 1_23 - 67 DZR PF12773.2 50 0.00012 14.0 7.1 1 1 8.9e-06 0.00051 12.0 7.1 14 47 5 48 2 50 0.82 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_1 - 388 VirC1 PF07015.6 231 1.4e-06 19.7 0.3 1 2 1.2e-05 0.00071 10.8 0.0 4 42 109 147 107 153 0.91 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 VirC1 PF07015.6 231 1.4e-06 19.7 0.3 2 2 0.00029 0.017 6.3 0.3 83 198 234 348 222 380 0.73 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 MerR PF00376.18 38 3.4e-07 22.0 0.0 1 2 1.5e-07 8.5e-06 17.5 0.0 2 28 42 68 41 71 0.95 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 MerR PF00376.18 38 3.4e-07 22.0 0.0 2 2 0.012 0.68 1.8 0.0 18 29 209 220 207 221 0.84 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_34 - 354 MTS PF05175.9 170 0.00016 13.2 0.0 1 1 6.1e-06 0.00035 12.1 0.0 73 154 3 97 1 107 0.73 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_38 - 96 HTH_26 PF13443.1 63 1.5e-08 27.0 0.0 1 1 4.7e-10 2.7e-08 26.1 0.0 5 55 41 90 37 91 0.89 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_47 - 76 HTH_17 PF12728.2 51 8.4e-06 18.2 0.0 1 1 5.7e-07 1.7e-05 17.2 0.0 4 31 19 46 18 66 0.88 # 44986 # 45213 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.504 1_1 - 388 HTH_17 PF12728.2 51 0.00012 14.4 0.0 1 1 1.1e-05 0.00031 13.2 0.0 4 33 42 74 41 86 0.82 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_23 - 67 TF_Zn_Ribbon PF08271.7 43 0.00032 12.2 1.4 1 2 0.00093 0.054 5.1 0.2 20 28 4 12 2 22 0.76 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_23 - 67 TF_Zn_Ribbon PF08271.7 43 0.00032 12.2 1.4 2 2 0.00042 0.025 6.2 0.1 16 26 28 38 26 39 0.89 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_38 - 96 HTH_11 PF08279.7 55 0.00032 12.5 0.0 1 1 1.1e-05 0.00066 11.5 0.0 3 34 32 65 30 65 0.85 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_38 - 96 MarR_2 PF12802.2 62 1.2e-06 20.3 0.0 1 1 3e-08 1.8e-06 19.8 0.0 9 41 36 66 31 66 0.92 # 41142 # 41429 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_23 - 67 zinc_ribbon_2 PF13240.1 23 0.022 6.6 13.7 1 3 0.00025 0.014 7.1 0.3 16 22 6 12 3 13 0.75 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_23 - 67 zinc_ribbon_2 PF13240.1 23 0.022 6.6 13.7 2 3 0.00015 0.0087 7.8 0.3 16 20 34 38 29 41 0.71 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_23 - 67 zinc_ribbon_2 PF13240.1 23 0.022 6.6 13.7 3 3 0.038 2.2 0.2 0.1 12 18 43 49 42 49 0.68 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_45 - 203 RNase_T PF00929.19 164 2.3e-27 88.4 0.2 1 1 3.5e-28 2e-26 85.3 0.2 1 163 22 192 22 193 0.91 # 43239 # 43847 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_23 - 67 DNA_RNApol_7kD PF03604.8 32 0.00024 12.7 3.7 1 2 0.00083 0.048 5.4 0.3 20 27 6 13 4 14 0.88 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_23 - 67 DNA_RNApol_7kD PF03604.8 32 0.00024 12.7 3.7 2 2 9.8e-05 0.0057 8.4 0.3 13 24 27 38 17 39 0.83 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_34 - 354 Methyltransf_11 PF08241.7 95 0.00015 14.4 0.0 1 1 3.6e-05 0.0021 10.7 0.0 69 95 53 79 1 79 0.67 # 38871 # 39932 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.527 1_6 - 276 RPA_C PF08784.6 102 4.1e-05 16.2 0.0 1 1 1.9e-06 0.00011 14.8 0.0 47 97 8 55 2 57 0.79 # 17493 # 18320 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_1 - 388 ArsA_ATPase PF02374.10 305 5.2e-07 21.0 0.1 1 2 5.6e-07 3.3e-05 15.1 0.0 5 36 111 142 108 151 0.88 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 ArsA_ATPase PF02374.10 305 5.2e-07 21.0 0.1 2 2 0.0024 0.14 3.3 0.0 125 136 233 244 223 254 0.84 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 1 2 1.5e-08 9e-07 21.1 0.0 2 50 108 156 107 196 0.91 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_1 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 2 2 0.0027 0.16 4.1 0.0 116 151 230 267 207 272 0.81 # 338 # 1501 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_23 - 67 Zn_ribbon_recom PF13408.1 58 0.0021 10.5 10.5 1 1 5.1e-05 0.003 10.0 10.5 8 42 6 50 3 60 0.78 # 32676 # 32876 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/11715f8f-d41f-4e95-8c4e-7c9bbd3eaaaf # Target file: checkm_output/bins/pm1454/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1454/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/11715f8f-d41f-4e95-8c4e-7c9bbd3eaaaf checkm_output/bins/pm1454/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:43:37 2017 # [ok]