# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_11 - 134 HTH_IclR PF09339.5 52 2.8e-06 18.0 0.3 1 1 2.9e-07 7.8e-06 16.6 0.3 19 41 4 26 1 26 0.92 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_21 - 202 HTH_38 PF13936.1 44 1.3e-08 25.4 1.0 1 1 1.7e-09 4.7e-08 23.6 0.0 15 44 168 197 160 197 0.93 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_9 - 331 DUF3584 PF12128.3 1201 0.00017 10.0 3.3 1 1 1.6e-05 0.00021 9.7 3.3 304 377 12 86 3 100 0.88 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 1_24 - 195 DUF3584 PF12128.3 1201 0.00024 9.5 9.1 1 1 2.3e-05 0.00031 9.1 9.1 601 687 14 106 4 116 0.56 # 18619 # 19203 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_21 - 202 Sigma70_r4_2 PF08281.7 54 3.5e-07 20.8 0.0 1 1 8.1e-08 1.1e-06 19.2 0.0 17 44 165 191 165 199 0.86 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 150 Sigma70_r4_2 PF08281.7 54 3.5e-06 17.6 0.1 1 1 5.1e-07 6.9e-06 16.6 0.1 28 51 5 28 4 30 0.93 # 10909 # 11358 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_18 - 323 Rep_3 PF01051.16 222 6.7e-43 137.8 7.3 1 1 2.5e-44 6.7e-43 137.8 7.3 3 221 8 228 6 229 0.91 # 11366 # 12334 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 1_10 - 235 rve PF00665.21 120 8.8e-14 42.7 0.1 1 2 0.015 0.4 1.9 0.0 78 102 27 49 6 54 0.84 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 235 rve PF00665.21 120 8.8e-14 42.7 0.1 2 2 6.1e-14 1.6e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 235 HTH_Tnp_1 PF01527.15 76 6.7e-05 13.9 0.3 1 1 5.4e-06 0.00015 12.9 0.3 4 51 6 58 4 63 0.79 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_21 - 202 GerE PF00196.14 58 8e-06 16.3 0.0 1 1 5.1e-07 1.4e-05 15.5 0.0 11 35 166 190 165 201 0.88 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_10 - 235 DDE_3 PF13358.1 146 0.00018 12.3 0.0 1 1 2.1e-05 0.00056 10.7 0.0 32 90 82 141 59 146 0.87 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_9 - 331 DivIC PF04977.10 80 0.00045 10.8 5.3 1 2 0.00068 0.018 5.7 2.4 19 51 16 48 8 52 0.68 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 1_9 - 331 DivIC PF04977.10 80 0.00045 10.8 5.3 2 2 0.00079 0.021 5.4 0.0 21 49 58 86 54 88 0.81 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 1_17 - 150 MerR_1 PF13411.1 69 7.6e-07 20.0 0.1 1 1 1.5e-07 2e-06 18.6 0.0 2 38 5 41 4 50 0.85 # 10909 # 11358 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_11 - 134 MerR_1 PF13411.1 69 0.00013 12.8 0.2 1 1 3.1e-05 0.00042 11.2 0.0 2 28 5 31 4 40 0.87 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_17 - 150 NUMOD1 PF07453.8 37 1.7e-05 15.8 0.2 1 1 1.4e-06 3.7e-05 14.6 0.1 18 37 5 24 4 24 0.96 # 10909 # 11358 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_9 - 331 Mnd1 PF03962.10 188 0.0028 8.3 4.3 1 1 0.0002 0.0053 7.4 4.3 62 139 14 91 11 101 0.75 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 1_10 - 235 HTH_32 PF13565.1 77 3.5e-07 22.1 0.2 1 1 5.6e-08 1.5e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_11 - 134 HTH_3 PF01381.17 55 0.00014 12.8 0.1 1 2 4.3e-05 0.0012 9.9 0.0 9 30 3 24 1 27 0.89 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_11 - 134 HTH_3 PF01381.17 55 0.00014 12.8 0.1 2 2 0.032 0.86 0.7 0.0 32 53 34 56 32 58 0.76 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_21 - 202 HTH_23 PF13384.1 50 3.3e-08 24.2 0.2 1 1 4.8e-09 3.3e-08 24.2 0.2 10 42 166 198 160 201 0.92 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_10 - 235 HTH_23 PF13384.1 50 1.6e-06 18.8 0.7 1 2 0.063 0.43 1.6 0.0 7 27 11 35 7 36 0.69 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_10 - 235 HTH_23 PF13384.1 50 1.6e-06 18.8 0.7 2 2 7.4e-06 5e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_17 - 150 HTH_23 PF13384.1 50 4e-05 14.4 0.1 1 1 1.3e-05 8.8e-05 13.3 0.1 19 39 5 25 1 26 0.90 # 10909 # 11358 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_11 - 134 HTH_23 PF13384.1 50 5.2e-05 14.0 0.1 1 1 1.6e-05 0.00011 13.0 0.1 18 39 4 25 1 26 0.91 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_21 - 202 HTH_7 PF02796.10 45 4.1e-06 17.7 0.0 1 1 4.4e-07 1.2e-05 16.3 0.0 13 38 165 190 156 190 0.93 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_21 - 202 HTH_29 PF13551.1 112 1.1e-05 16.6 0.5 1 2 0.0071 0.19 3.0 0.0 51 88 43 87 25 101 0.62 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_21 - 202 HTH_29 PF13551.1 112 1.1e-05 16.6 0.5 2 2 1.9e-05 0.00052 11.3 0.2 4 36 166 197 165 200 0.89 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_9 - 331 DDE_Tnp_IS66 PF03050.9 271 5.3e-35 111.9 0.6 1 1 9.3e-36 1.3e-34 110.7 0.0 1 98 175 280 175 294 0.92 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 1_10 - 235 DDE_Tnp_IS66 PF03050.9 271 6.3e-13 39.5 0.3 1 1 6e-14 8e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_21 - 202 HTH_28 PF13518.1 52 6.9e-09 26.7 0.4 1 1 2.4e-09 1.6e-08 25.5 0.4 4 38 165 199 165 201 0.92 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_10 - 235 HTH_28 PF13518.1 52 1.6e-05 16.0 1.2 1 1 1e-05 6.8e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_11 - 134 HTH_28 PF13518.1 52 0.00014 13.0 0.1 1 1 5.2e-05 0.00035 11.7 0.0 13 34 4 25 1 36 0.92 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_17 - 150 HTH_28 PF13518.1 52 0.00024 12.2 0.0 1 1 6.5e-05 0.00044 11.4 0.0 14 35 5 26 2 30 0.93 # 10909 # 11358 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_21 - 202 HTH_24 PF13412.1 48 6.5e-06 16.6 0.0 1 1 1e-06 1.4e-05 15.6 0.0 16 40 172 196 168 196 0.89 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_11 - 134 HTH_24 PF13412.1 48 0.00015 12.3 0.3 1 2 9.6e-05 0.0013 9.3 0.2 17 39 3 25 2 26 0.93 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_11 - 134 HTH_24 PF13412.1 48 0.00015 12.3 0.3 2 2 0.047 0.64 0.6 0.0 15 34 37 58 36 60 0.80 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_21 - 202 HTH_10 PF04967.7 53 0.00012 12.8 0.0 1 1 1.3e-05 0.00035 11.3 0.0 27 46 177 196 173 199 0.86 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_21 - 202 HTH_31 PF13560.1 64 0.00064 11.0 4.3 1 2 0.023 0.62 1.5 0.1 15 38 23 56 16 77 0.73 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_21 - 202 HTH_31 PF13560.1 64 0.00064 11.0 4.3 2 2 4.9e-05 0.0013 10.0 0.5 11 39 170 198 142 201 0.90 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 150 HTH_36 PF13730.1 55 8e-05 13.9 0.0 1 1 6.2e-06 0.00017 12.8 0.0 27 48 5 26 1 26 0.91 # 10909 # 11358 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_21 - 202 HTH_Tnp_ISL3 PF13542.1 52 1.1e-05 15.7 0.2 1 1 1e-06 2.7e-05 14.4 0.2 29 51 175 197 166 198 0.85 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 150 MerR PF00376.18 38 7e-06 16.7 0.0 1 1 9.5e-07 1.3e-05 15.9 0.0 1 27 5 31 5 37 0.88 # 10909 # 11358 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_11 - 134 MerR PF00376.18 38 9e-05 13.1 0.1 1 1 1.3e-05 0.00018 12.2 0.1 1 25 5 29 5 36 0.91 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_21 - 202 CENP-B_N PF04218.8 53 4.2e-05 14.0 0.0 1 1 3.9e-06 0.00011 12.8 0.0 21 45 172 196 165 199 0.87 # 16294 # 16899 # 1 # ID=1_21;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_10 - 235 DDE_Tnp_IS240 PF13610.1 140 2.1e-53 171.2 0.0 1 1 1.1e-54 2.8e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 6380 # 7084 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_11 - 134 HTH_17 PF12728.2 51 4e-09 27.8 0.0 1 1 5.2e-10 7e-09 27.0 0.0 3 45 5 48 4 51 0.85 # 7324 # 7725 # -1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_17 - 150 HTH_17 PF12728.2 51 3.7e-08 24.7 0.0 1 1 5.1e-09 6.8e-08 23.8 0.0 2 30 4 32 3 50 0.80 # 10909 # 11358 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_24 - 195 ATP-synt_B PF00430.13 132 0.0033 8.3 11.6 1 2 0.00085 0.023 5.6 4.0 26 89 16 79 14 80 0.94 # 18619 # 19203 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_24 - 195 ATP-synt_B PF00430.13 132 0.0033 8.3 11.6 2 2 9.8e-05 0.0027 8.6 4.1 32 79 62 110 59 115 0.85 # 18619 # 19203 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_9 - 331 Zn_Tnp_IS1595 PF12760.2 46 0.0069 7.3 6.7 1 1 0.0012 0.033 5.2 6.7 13 44 112 161 110 163 0.79 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 1_9 - 331 AAA_13 PF13166.1 712 6.2e-05 12.6 0.1 1 1 3.1e-06 8.4e-05 12.1 0.1 360 441 4 85 2 103 0.90 # 5497 # 6489 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.593 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/9d0eba16-8cdf-42fc-9c0a-03f1b4587bf0 # Target file: checkm_output/bins/pm1441/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1441/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/9d0eba16-8cdf-42fc-9c0a-03f1b4587bf0 checkm_output/bins/pm1441/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:43:19 2017 # [ok]