# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 119 HTH_Tnp_Tc3_2 PF01498.13 72 2.5e-05 12.8 0.0 1 1 1.1e-05 4.4e-05 12.0 0.0 14 40 26 52 14 64 0.90 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 rve PF00665.21 120 3.6e-10 28.4 0.1 1 2 0.0047 0.019 3.5 0.0 78 102 27 49 5 54 0.83 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 rve PF00665.21 120 3.6e-10 28.4 0.1 2 2 4e-09 1.6e-08 23.1 0.0 9 54 75 117 69 119 0.85 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 HTH_Tnp_1 PF01527.15 76 2.3e-06 16.0 0.4 1 1 1.3e-06 5.2e-06 14.8 0.3 4 51 6 58 4 63 0.79 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 HTH_32 PF13565.1 77 3.2e-08 22.8 0.0 1 1 1.5e-08 6.2e-08 21.8 0.0 26 76 5 50 2 51 0.83 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 HTH_23 PF13384.1 50 1.3e-07 19.6 1.5 1 2 0.0056 0.023 3.0 0.1 7 27 11 35 7 36 0.70 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 HTH_23 PF13384.1 50 1.3e-07 19.6 1.5 2 2 7.9e-07 3.2e-06 15.2 0.3 28 42 41 55 40 64 0.87 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 DDE_Tnp_IS66 PF03050.9 271 3.6e-13 37.6 0.6 1 1 9.6e-14 3.8e-13 37.5 0.6 5 116 10 119 6 119 0.93 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 HTH_28 PF13518.1 52 9.5e-07 17.3 1.5 1 1 1.1e-06 4.3e-06 15.1 1.4 22 36 40 54 17 55 0.74 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_1 - 119 Arg_repressor PF01316.16 70 4.5e-05 11.4 0.0 1 1 1.8e-05 7.1e-05 10.8 0.0 23 46 29 52 26 55 0.92 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_4 - 111 DDE_Tnp_IS240 PF13610.1 140 4.1e-26 80.0 0.0 1 1 2.3e-26 4.5e-26 79.9 0.0 57 139 6 88 1 89 0.96 # 1873 # 2205 # -1 # ID=1_4;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.517 1_1 - 119 DDE_Tnp_IS240 PF13610.1 140 3.4e-25 77.0 0.1 1 1 2.8e-25 5.6e-25 76.3 0.1 4 48 75 119 73 119 0.98 # 2 # 358 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7b508cce-3ac9-4235-aa90-f1d77fcb3cfd # Target file: checkm_output/bins/pm1437/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1437/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7b508cce-3ac9-4235-aa90-f1d77fcb3cfd checkm_output/bins/pm1437/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:43:12 2017 # [ok]