# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_97 - 144 Acetate_kinase PF00871.12 388 0.00037 11.9 0.0 1 1 4.6e-06 0.00045 11.6 0.0 25 99 64 137 45 142 0.79 # 85992 # 86423 # -1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.595 1_63 - 971 Peptidase_M66 PF10462.4 305 5e-07 21.7 0.4 1 1 1.1e-08 1.1e-06 20.6 0.4 164 235 829 902 817 905 0.82 # 49733 # 52645 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.576 1_66 - 296 HTH_41 PF14502.1 48 0.0012 11.4 0.4 1 1 3.9e-05 0.0037 9.8 0.1 6 27 66 87 64 99 0.89 # 53528 # 54415 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_66 - 296 HTH_AsnC-type PF13404.1 42 0.00054 12.4 0.2 1 1 1.3e-05 0.0013 11.2 0.2 19 37 68 86 67 88 0.89 # 53528 # 54415 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_71 - 2290 N6_Mtase PF02384.11 311 8.9e-07 21.0 0.0 1 2 1.4e-07 1.4e-05 17.2 0.0 123 236 178 287 147 299 0.82 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_71 - 2290 N6_Mtase PF02384.11 311 8.9e-07 21.0 0.0 2 2 0.024 2.3 -0.0 0.0 27 51 2057 2081 2043 2088 0.76 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_71 - 2290 Helicase_C PF00271.26 78 1.9e-06 20.5 0.0 1 1 1e-07 9.7e-06 18.3 0.0 24 78 1471 1526 1457 1526 0.90 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_4 - 125 HTH_38 PF13936.1 44 0.00049 12.6 0.0 1 1 9.5e-06 0.00092 11.7 0.0 17 39 73 95 57 99 0.86 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_80 - 280 TIGR01932 TIGR01932 318 7.9e-08 24.0 2.2 1 1 1e-09 1e-07 23.6 2.2 147 268 121 245 81 251 0.79 # 71867 # 72706 # 1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_80 - 280 TIGR01933 TIGR01933 261 2.6e-08 26.1 0.5 1 1 3.4e-10 3.3e-08 25.8 0.5 75 213 108 238 58 267 0.75 # 71867 # 72706 # 1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_40 - 175 DUF3584 PF12128.3 1201 0.0004 10.6 10.8 1 1 4.7e-06 0.00046 10.4 10.8 600 676 46 122 35 146 0.79 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_34 - 968 MethyltransfD12 PF02086.10 260 2.2e-50 164.3 0.0 1 1 2.9e-52 2.8e-50 164.0 0.0 1 259 706 949 706 950 0.94 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_4 - 125 Sigma70_r4_2 PF08281.7 54 0.00016 14.0 0.0 1 1 2.8e-06 0.00027 13.3 0.0 24 45 74 95 69 99 0.85 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_2 - 69 zf-ribbon_3 PF13248.1 26 4.8e-06 18.6 0.4 1 2 6e-05 0.0029 9.8 0.1 3 11 1 9 1 16 0.79 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 69 zf-ribbon_3 PF13248.1 26 4.8e-06 18.6 0.4 2 2 0.00038 0.018 7.2 0.0 4 13 36 45 34 53 0.78 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_3 - 148 zf-ribbon_3 PF13248.1 26 1.7e-05 16.9 0.8 1 2 3.6e-05 0.0018 10.4 0.1 4 12 6 15 4 21 0.71 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 zf-ribbon_3 PF13248.1 26 1.7e-05 16.9 0.8 2 2 0.0023 0.11 4.7 0.1 4 9 131 136 128 141 0.67 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_60 - 206 AAA_23 PF13476.1 202 9.8e-05 15.6 0.5 1 1 2e-06 9.8e-05 15.6 0.5 132 199 138 203 10 205 0.73 # 46529 # 47146 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.610 1_40 - 175 AAA_23 PF13476.1 202 0.012 8.8 10.9 1 1 0.00029 0.014 8.5 10.9 141 201 61 118 33 122 0.61 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_95 - 215 TIGR00576 TIGR00576 143 1.3e-31 101.8 0.0 1 1 2e-33 1.9e-31 101.3 0.0 2 141 4 150 3 151 0.88 # 84383 # 85027 # 1 # ID=1_95;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.622 1_71 - 2290 Methyltransf_26 PF13659.1 117 4.3e-10 32.5 0.0 1 1 4.8e-11 2.3e-09 30.2 0.0 2 117 120 234 119 234 0.88 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_34 - 968 Methyltransf_26 PF13659.1 117 2.3e-06 20.5 0.0 1 1 1.5e-07 7.2e-06 18.9 0.0 1 91 724 889 724 926 0.59 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 UPF0020 PF01170.13 180 5.1e-06 19.0 0.0 1 2 1.2e-05 0.0012 11.3 0.0 26 49 721 744 717 815 0.74 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 UPF0020 PF01170.13 180 5.1e-06 19.0 0.0 2 2 0.0008 0.077 5.4 0.0 84 116 849 881 826 888 0.93 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_40 - 175 DivIC PF04977.10 80 0.00042 12.7 16.9 1 2 2.6e-05 0.0025 10.2 0.0 3 50 18 65 16 70 0.86 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_40 - 175 DivIC PF04977.10 80 0.00042 12.7 16.9 2 2 0.023 2.3 0.7 16.3 14 61 71 119 63 123 0.57 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_4 - 125 Sigma70_r4 PF04545.11 50 7.8e-07 21.3 1.0 1 1 1.2e-08 1.1e-06 20.8 0.1 14 43 70 99 55 100 0.82 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_4 - 125 HTH_37 PF13744.1 80 4.3e-07 22.6 0.0 1 1 7.2e-09 7e-07 21.9 0.0 30 64 75 110 70 115 0.81 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_4 - 125 HTH_25 PF13413.1 62 0.00047 12.7 0.0 1 1 1e-05 0.001 11.6 0.0 6 32 72 98 70 101 0.90 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_94 - 159 DUF977 PF06163.6 127 0.00031 13.4 0.0 1 2 0.051 5 -0.2 0.0 47 95 23 71 3 81 0.71 # 83903 # 84379 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_94 - 159 DUF977 PF06163.6 127 0.00031 13.4 0.0 2 2 1.4e-05 0.0014 11.3 0.0 12 56 90 134 83 139 0.91 # 83903 # 84379 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 504 Terminase_1 PF03354.10 477 6.8e-06 17.5 0.0 1 1 9.8e-08 9.5e-06 17.0 0.0 26 157 58 193 38 217 0.78 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_40 - 175 Mnd1 PF03962.10 188 0.00037 13.0 7.3 1 1 1e-05 0.00049 12.6 7.3 66 121 57 113 45 134 0.72 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_60 - 206 Mnd1 PF03962.10 188 0.0084 8.6 8.0 1 1 0.00026 0.013 8.0 8.0 67 131 138 203 111 205 0.83 # 46529 # 47146 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.610 1_66 - 296 GntR PF00392.16 64 2.5e-05 16.6 0.1 1 1 6.6e-07 6.4e-05 15.3 0.1 27 59 69 101 64 103 0.90 # 53528 # 54415 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_4 - 125 HTH_3 PF01381.17 55 1e-12 40.7 0.1 1 1 3.3e-14 1.6e-12 40.0 0.1 7 54 74 120 70 121 0.91 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_24 - 98 HTH_3 PF01381.17 55 2.4e-09 29.8 0.0 1 1 8.7e-11 4.2e-09 29.1 0.0 1 38 37 74 37 83 0.96 # 12052 # 12345 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_4 - 125 HTH_23 PF13384.1 50 3.8e-05 16.2 0.3 1 1 8.1e-07 7.9e-05 15.2 0.3 9 35 68 94 57 122 0.83 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_2 - 69 Ribosomal_S27e PF01667.12 55 0.00017 14.0 0.4 1 2 7.9e-05 0.0076 8.7 0.0 9 22 2 15 1 24 0.87 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 69 Ribosomal_S27e PF01667.12 55 0.00017 14.0 0.4 2 2 0.0024 0.24 3.9 0.1 28 37 36 45 27 48 0.89 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_4 - 125 HTH_19 PF12844.2 64 1.7e-07 24.1 0.0 1 1 5.8e-09 2.8e-07 23.4 0.0 8 51 72 114 70 122 0.87 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_24 - 98 HTH_19 PF12844.2 64 2.1e-07 23.8 0.0 1 1 9.4e-09 4.6e-07 22.8 0.0 4 45 37 80 35 93 0.85 # 12052 # 12345 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_3 - 148 zinc_ribbon_4 PF13717.1 36 0.00048 12.7 2.0 1 2 0.00051 0.049 6.3 0.3 2 9 4 11 2 13 0.62 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 zinc_ribbon_4 PF13717.1 36 0.00048 12.7 2.0 2 2 0.00099 0.096 5.4 0.0 28 35 132 139 122 140 0.89 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_27 - 405 Myb_DNA-bind_3 PF12776.2 96 0.0037 10.8 6.0 1 2 0.00012 0.011 9.2 0.1 22 62 45 84 25 96 0.81 # 13548 # 14762 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_27 - 405 Myb_DNA-bind_3 PF12776.2 96 0.0037 10.8 6.0 2 2 0.051 4.9 0.8 1.2 38 77 279 324 253 339 0.67 # 13548 # 14762 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_3 - 148 OrfB_Zn_ribbon PF07282.6 69 0.0022 10.5 6.4 1 2 0.0053 0.52 3.0 0.9 30 40 6 16 4 31 0.74 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 OrfB_Zn_ribbon PF07282.6 69 0.0022 10.5 6.4 2 2 3.1e-05 0.003 10.1 0.4 41 62 124 145 115 146 0.79 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_71 - 2290 ResIII PF04851.10 184 3.2e-08 26.4 0.0 1 2 1.2e-05 0.0012 11.6 0.0 23 78 840 899 815 940 0.68 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_71 - 2290 ResIII PF04851.10 184 3.2e-08 26.4 0.0 2 2 8.2e-06 0.00079 12.1 0.1 91 182 983 1102 962 1104 0.71 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_71 - 2290 SNF2_N PF00176.18 299 6.4e-16 50.8 0.0 1 1 2.7e-17 2.6e-15 48.8 0.0 27 272 844 1225 829 1251 0.78 # 59171 # 66040 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.605 1_13 - 306 PAPS_reduct PF01507.14 174 3.5e-12 39.3 0.2 1 1 4e-13 3.9e-11 35.9 0.1 2 140 14 181 13 198 0.74 # 4330 # 5247 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_17 - 422 IMS_HHH PF11798.3 32 2.8e-06 20.1 0.0 1 1 1.1e-07 1.1e-05 18.3 0.0 1 32 168 199 168 199 0.93 # 6233 # 7498 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.581 1_66 - 296 HTH_24 PF13412.1 48 0.0011 11.3 0.1 1 1 1.9e-05 0.0019 10.5 0.1 20 47 69 96 67 97 0.86 # 53528 # 54415 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_94 - 159 DUF2250 PF10007.4 93 0.00077 12.3 0.0 1 2 0.0026 0.25 4.2 0.0 32 54 43 65 15 75 0.73 # 83903 # 84379 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_94 - 159 DUF2250 PF10007.4 93 0.00077 12.3 0.0 2 2 0.00065 0.063 6.1 0.0 4 53 86 135 83 141 0.92 # 83903 # 84379 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_24 - 98 HTH_31 PF13560.1 64 3.9e-11 35.9 0.0 1 1 1.4e-12 6.8e-11 35.2 0.0 6 46 37 76 36 88 0.85 # 12052 # 12345 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_4 - 125 HTH_31 PF13560.1 64 7.8e-10 31.8 0.4 1 1 2.3e-11 1.1e-09 31.3 0.4 8 58 70 118 55 121 0.82 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_66 - 296 HTH_36 PF13730.1 55 2.7e-05 17.2 0.3 1 1 2.5e-06 0.00012 15.1 0.0 26 55 67 96 52 96 0.86 # 53528 # 54415 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_21 - 295 HTH_36 PF13730.1 55 3.4e-05 16.9 0.0 1 1 2.8e-06 0.00014 14.9 0.0 6 55 210 263 203 263 0.84 # 9493 # 10377 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_89 - 504 Terminase_6 PF03237.10 384 1.7e-07 23.1 0.0 1 1 2.7e-09 2.6e-07 22.5 0.0 5 311 62 380 60 443 0.76 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_87 - 376 StbA PF06406.6 318 1.8e-34 111.9 0.0 1 1 2.3e-36 2.2e-34 111.6 0.0 3 288 9 313 7 344 0.82 # 75982 # 77109 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 1_2 - 69 DZR PF12773.2 50 0.0002 14.0 0.1 1 1 3.3e-06 0.00032 13.4 0.1 15 41 3 47 1 53 0.87 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_53 - 478 PRAI PF00697.17 197 0.00061 12.2 0.2 1 1 1.5e-05 0.0014 11.0 0.1 123 182 413 475 372 476 0.80 # 38631 # 40064 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_66 - 296 HTH_Tnp_ISL3 PF13542.1 52 0.0002 13.4 0.1 1 1 4e-06 0.00039 12.5 0.1 29 50 68 89 65 91 0.89 # 53528 # 54415 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_40 - 175 GrpE PF01025.14 166 0.00037 12.9 7.8 1 1 5.9e-06 0.00057 12.3 7.8 6 58 68 120 40 125 0.92 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_34 - 968 DNA_methylase PF00145.12 335 6.4e-35 113.6 0.0 1 4 1.8e-20 1.8e-18 59.6 0.0 5 117 6 131 2 140 0.89 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 DNA_methylase PF00145.12 335 6.4e-35 113.6 0.0 2 4 2.4e-08 2.3e-06 19.8 0.0 137 163 197 223 190 285 0.80 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 DNA_methylase PF00145.12 335 6.4e-35 113.6 0.0 3 4 2.4e-09 2.3e-07 23.0 0.0 279 311 522 558 450 565 0.80 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_34 - 968 DNA_methylase PF00145.12 335 6.4e-35 113.6 0.0 4 4 0.00038 0.037 5.9 0.0 312 333 590 611 577 613 0.88 # 19696 # 22599 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.583 1_3 - 148 zinc_ribbon_5 PF13719.1 37 0.00043 12.8 2.0 1 2 0.00038 0.037 6.6 0.3 2 9 4 11 2 13 0.62 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 zinc_ribbon_5 PF13719.1 37 0.00043 12.8 2.0 2 2 0.0011 0.11 5.1 0.0 28 35 132 139 122 140 0.89 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_4 - 125 HTH_26 PF13443.1 63 8.4e-08 25.3 0.0 1 1 1.7e-09 1.7e-07 24.3 0.0 9 57 75 121 74 123 0.96 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_87 - 376 MreB_Mbl PF06723.8 327 0.00042 11.8 1.4 1 2 0.083 8.1 -2.3 0.0 4 32 9 39 7 46 0.72 # 75982 # 77109 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 1_87 - 376 MreB_Mbl PF06723.8 327 0.00042 11.8 1.4 2 2 3.2e-05 0.0031 8.9 0.4 123 318 155 346 142 355 0.52 # 75982 # 77109 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 1_2 - 69 Zn-ribbon_8 PF09723.5 42 0.00012 14.9 1.6 1 2 0.00078 0.038 6.9 0.2 28 35 2 9 1 12 0.81 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 69 Zn-ribbon_8 PF09723.5 42 0.00012 14.9 1.6 2 2 0.00056 0.027 7.4 0.1 7 25 36 52 36 55 0.84 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_3 - 148 Zn-ribbon_8 PF09723.5 42 0.00022 14.1 2.8 1 2 7.6e-05 0.0037 10.1 0.2 27 39 5 17 2 18 0.87 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 Zn-ribbon_8 PF09723.5 42 0.00022 14.1 2.8 2 2 0.0064 0.31 4.0 0.2 7 15 131 139 125 143 0.87 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_57 - 199 Pup_ligase PF03136.10 444 0.00029 12.3 1.7 1 1 3.7e-06 0.00036 12.0 1.7 278 366 101 189 79 196 0.82 # 45056 # 45652 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_2 - 69 TF_Zn_Ribbon PF08271.7 43 4e-06 19.0 2.4 1 2 1.6e-05 0.00076 11.7 0.1 1 15 1 15 1 19 0.90 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 69 TF_Zn_Ribbon PF08271.7 43 4e-06 19.0 2.4 2 2 0.00037 0.018 7.3 0.3 10 32 26 47 21 51 0.72 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_3 - 148 TF_Zn_Ribbon PF08271.7 43 0.00037 12.7 0.5 1 2 0.001 0.049 5.9 0.1 2 9 6 13 5 25 0.87 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 TF_Zn_Ribbon PF08271.7 43 0.00037 12.7 0.5 2 2 0.0021 0.1 4.9 0.0 3 14 132 142 117 146 0.63 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 Zn_Tnp_IS1595 PF12760.2 46 0.00032 13.4 4.5 1 2 0.00011 0.01 8.6 0.1 19 27 5 13 2 24 0.76 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 Zn_Tnp_IS1595 PF12760.2 46 0.00032 13.4 4.5 2 2 0.00061 0.059 6.1 0.9 34 45 122 137 113 138 0.72 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_66 - 296 MarR_2 PF12802.2 62 0.00023 13.7 0.2 1 1 1.4e-05 0.00068 12.2 0.0 14 54 56 99 53 108 0.79 # 53528 # 54415 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_4 - 125 MarR_2 PF12802.2 62 0.00029 13.4 0.0 1 1 1.1e-05 0.00053 12.6 0.0 21 40 76 95 59 96 0.86 # 1143 # 1517 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_3 - 148 zinc_ribbon_2 PF13240.1 23 0.00012 14.5 3.3 1 2 0.00013 0.0065 8.9 0.8 1 7 6 12 6 18 0.85 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 zinc_ribbon_2 PF13240.1 23 0.00012 14.5 3.3 2 2 0.0013 0.061 5.8 0.1 15 20 131 136 123 139 0.74 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_2 - 69 zinc_ribbon_2 PF13240.1 23 0.00021 13.6 2.0 1 2 0.00019 0.0093 8.4 0.6 1 8 2 9 2 10 0.87 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 69 zinc_ribbon_2 PF13240.1 23 0.00021 13.6 2.0 2 2 0.003 0.15 4.6 0.0 11 21 32 42 29 44 0.79 # 332 # 538 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_94 - 159 TrmB PF01978.14 68 2.2e-08 26.6 0.0 1 2 0.00026 0.025 7.2 0.0 38 65 49 77 19 80 0.76 # 83903 # 84379 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_94 - 159 TrmB PF01978.14 68 2.2e-08 26.6 0.0 2 2 1.7e-07 1.7e-05 17.4 0.0 14 59 96 149 88 158 0.77 # 83903 # 84379 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.568 1_89 - 504 Helicase_RecD PF05127.9 177 2.5e-05 16.8 0.0 1 1 5.1e-07 5e-05 15.8 0.0 2 107 59 177 58 197 0.72 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_66 - 296 LacI PF00356.16 46 0.00026 13.5 0.3 1 1 5.3e-06 0.00052 12.5 0.3 5 18 72 85 68 88 0.87 # 53528 # 54415 # -1 # ID=1_66;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.508 1_61 - 719 Seryl_tRNA_N PF02403.17 108 0.0039 10.1 9.6 1 2 8.2e-05 0.008 9.1 5.0 47 99 189 241 182 245 0.89 # 47146 # 49302 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_61 - 719 Seryl_tRNA_N PF02403.17 108 0.0039 10.1 9.6 2 2 0.013 1.3 2.0 0.0 45 83 667 708 664 716 0.75 # 47146 # 49302 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_3 - 148 DNA_RNApol_7kD PF03604.8 32 0.0035 9.7 3.1 1 2 0.00017 0.016 7.6 0.7 18 32 5 19 2 19 0.89 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 DNA_RNApol_7kD PF03604.8 32 0.0035 9.7 3.1 2 2 0.0079 0.77 2.2 0.1 3 9 132 138 130 145 0.78 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_60 - 206 AAA_13 PF13166.1 712 7.4e-06 17.5 1.1 1 1 1.9e-07 9.1e-06 17.2 1.1 382 465 121 202 72 204 0.81 # 46529 # 47146 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.610 1_40 - 175 AAA_13 PF13166.1 712 0.00025 12.4 5.1 1 1 6e-06 0.00029 12.2 5.1 86 139 64 117 33 139 0.57 # 25090 # 25614 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.562 1_3 - 148 NOB1_Zn_bind PF08772.6 73 4e-06 19.5 0.5 1 2 2.9e-06 0.00028 13.6 0.1 27 63 7 43 3 52 0.90 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_3 - 148 NOB1_Zn_bind PF08772.6 73 4e-06 19.5 0.5 2 2 0.0028 0.27 4.0 0.0 25 35 130 140 121 142 0.74 # 640 # 1083 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.583 1_89 - 504 Terminase_3 PF04466.8 387 0.0012 10.8 0.1 1 2 0.0001 0.01 7.7 0.1 7 52 59 105 55 119 0.82 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_89 - 504 Terminase_3 PF04466.8 387 0.0012 10.8 0.1 2 2 0.017 1.7 0.4 0.0 220 261 156 196 144 216 0.79 # 78629 # 80140 # 1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.579 1_17 - 422 DNA_pol_lambd_f PF10391.4 52 0.00022 13.7 0.0 1 1 5.9e-06 0.00057 12.3 0.0 8 32 184 209 179 221 0.85 # 6233 # 7498 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.581 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/1e23f028-7103-4d23-bd6f-f7bd144fcc7a # Target file: checkm_output/bins/pm1420/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1420/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1e23f028-7103-4d23-bd6f-f7bd144fcc7a checkm_output/bins/pm1420/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:49 2017 # [ok]