# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 138 HTH_IclR PF09339.5 52 4.9e-05 13.5 0.1 1 1 9.6e-06 9.1e-05 12.7 0.1 20 39 5 24 2 26 0.91 # 7284 # 7697 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_6 - 96 HTH_IclR PF09339.5 52 7.9e-05 12.9 0.2 1 1 1.8e-05 0.00017 11.8 0.1 14 38 43 67 37 68 0.90 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_AsnC-type PF13404.1 42 8.1e-05 12.8 0.1 1 2 3.2e-05 0.0006 10.0 0.0 9 36 39 66 36 66 0.82 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_AsnC-type PF13404.1 42 8.1e-05 12.8 0.1 2 2 0.043 0.82 -0.0 0.0 19 30 78 89 73 94 0.65 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_38 PF13936.1 44 2e-06 17.9 0.1 1 1 2.2e-07 4.1e-06 16.9 0.1 9 39 30 66 28 67 0.76 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 MarR PF01047.17 59 0.00012 12.3 0.0 1 1 1.1e-05 0.0002 11.7 0.0 13 37 43 67 37 69 0.86 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_12 - 195 DUF3584 PF12128.3 1201 0.00023 9.0 9.6 1 1 1.6e-05 0.0003 8.7 9.6 601 687 14 106 3 116 0.55 # 10991 # 11575 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 96 TetR_N PF00440.18 47 0.00013 12.2 0.1 1 2 2.8e-05 0.00054 10.2 0.0 16 35 47 66 45 67 0.88 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 TetR_N PF00440.18 47 0.00013 12.2 0.1 2 2 0.071 1.3 -0.6 0.0 23 32 83 92 73 94 0.71 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_8 - 138 Sigma70_r4_2 PF08281.7 54 4.6e-05 13.5 0.2 1 1 8.7e-06 8.3e-05 12.7 0.2 28 51 5 28 4 31 0.92 # 7284 # 7697 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_6 - 96 Sigma70_r4_2 PF08281.7 54 5.4e-05 13.3 0.0 1 1 1.2e-05 0.00011 12.2 0.0 26 44 47 65 34 67 0.91 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_9 - 317 Rep_3 PF01051.16 222 5.5e-46 147.4 11.2 1 2 2.9e-47 5.5e-46 147.4 11.2 3 221 4 221 2 222 0.91 # 7705 # 8655 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.363 1_9 - 317 Rep_3 PF01051.16 222 5.5e-46 147.4 11.2 2 2 0.094 1.8 -1.4 0.1 125 144 271 290 260 301 0.84 # 7705 # 8655 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.363 1_5 - 235 rve PF00665.21 120 6.2e-14 42.7 0.1 1 2 0.015 0.28 1.9 0.0 78 102 27 49 6 54 0.84 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 235 rve PF00665.21 120 6.2e-14 42.7 0.1 2 2 6.1e-14 1.2e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 96 Fe_dep_repress PF01325.14 60 3.7e-07 20.7 0.1 1 1 4.1e-08 7.8e-07 19.6 0.1 23 42 48 67 23 72 0.90 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_5 - 235 HTH_Tnp_1 PF01527.15 76 4.7e-05 13.9 0.3 1 1 5.4e-06 0.0001 12.9 0.3 4 51 6 58 4 63 0.79 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 235 DDE_3 PF13358.1 146 0.00013 12.3 0.0 1 1 2.1e-05 0.0004 10.7 0.0 32 90 82 141 59 146 0.87 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 96 Sigma70_r4 PF04545.11 50 4.9e-06 16.4 0.0 1 1 4e-07 7.6e-06 15.8 0.0 15 45 42 72 33 74 0.88 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_37 PF13744.1 80 1.4e-12 37.9 0.0 1 1 9.4e-14 1.8e-12 37.6 0.0 12 73 28 88 17 93 0.89 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_8 - 138 MerR_1 PF13411.1 69 1.9e-06 18.2 0.1 1 1 2.8e-07 5.3e-06 16.8 0.0 2 35 5 38 4 51 0.91 # 7284 # 7697 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_6 - 96 Crp PF00325.15 32 9.6e-05 12.5 0.2 1 1 1.5e-05 0.00029 10.9 0.1 3 22 48 67 47 67 0.96 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_25 PF13413.1 62 2.6e-06 17.7 0.0 1 1 2.9e-07 5.5e-06 16.6 0.0 1 37 38 74 38 92 0.87 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_8 - 138 NUMOD1 PF07453.8 37 9.4e-05 12.9 0.3 1 1 1e-05 0.00019 11.9 0.3 18 37 5 24 4 24 0.95 # 7284 # 7697 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_8 - 138 HTH_Tnp_IS630 PF01710.11 120 3.9e-05 13.9 0.2 1 1 4.6e-06 8.8e-05 12.8 0.1 20 62 5 46 2 52 0.91 # 7284 # 7697 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_5 - 235 HTH_32 PF13565.1 77 2.5e-07 22.1 0.2 1 1 5.6e-08 1.1e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 96 HTH_3 PF01381.17 55 2.5e-16 49.9 0.0 1 1 2e-17 3.8e-16 49.4 0.0 1 52 39 90 39 93 0.94 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_23 PF13384.1 50 1.2e-08 25.0 0.1 1 1 6.7e-09 4.2e-08 23.3 0.1 4 36 31 66 28 90 0.82 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_5 - 235 HTH_23 PF13384.1 50 1.2e-06 18.8 0.7 1 2 0.047 0.3 1.6 0.0 7 27 11 35 7 36 0.69 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 235 HTH_23 PF13384.1 50 1.2e-06 18.8 0.7 2 2 5.6e-06 3.5e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_8 - 138 HTH_23 PF13384.1 50 7.5e-05 13.0 0.1 1 1 2.1e-05 0.00013 12.2 0.1 19 40 5 26 1 27 0.92 # 7284 # 7697 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_6 - 96 HTH_7 PF02796.10 45 7e-05 13.3 0.0 1 1 6.3e-06 0.00012 12.6 0.0 17 40 43 66 31 69 0.89 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_19 PF12844.2 64 1.5e-10 31.7 0.0 1 1 1.3e-11 2.4e-10 31.0 0.0 4 54 39 89 37 92 0.96 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_29 PF13551.1 112 1.6e-05 15.7 0.1 1 1 1.3e-06 2.5e-05 15.0 0.1 6 46 42 81 34 94 0.82 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_5 - 235 DDE_Tnp_IS66 PF03050.9 271 4.4e-13 39.5 0.3 1 1 3e-14 5.7e-13 39.2 0.3 5 132 10 144 6 174 0.87 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 96 HTH_28 PF13518.1 52 3.1e-06 17.8 0.0 1 1 1.2e-06 1.2e-05 15.9 0.0 1 31 33 66 33 70 0.78 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_5 - 235 HTH_28 PF13518.1 52 1.1e-05 16.0 1.2 1 1 5.1e-06 4.8e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 96 HTH_24 PF13412.1 48 1.5e-05 14.9 0.0 1 1 1.7e-06 3.2e-05 13.9 0.0 9 36 39 66 33 67 0.89 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_31 PF13560.1 64 1.2e-17 54.6 0.2 1 1 8.8e-19 1.7e-17 54.1 0.2 4 56 37 88 34 93 0.93 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_6 - 96 HTH_Tnp_ISL3 PF13542.1 52 1.1e-05 15.2 0.1 1 1 1.3e-06 2.5e-05 14.0 0.1 19 46 39 66 33 67 0.81 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_8 - 138 MerR PF00376.18 38 6.8e-06 16.2 0.0 1 1 6.1e-07 1.2e-05 15.5 0.0 1 27 5 30 5 38 0.87 # 7284 # 7697 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_5 - 235 DDE_Tnp_IS240 PF13610.1 140 1.4e-53 171.2 0.0 1 1 1.1e-54 2e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 5551 # 6255 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 96 HTH_26 PF13443.1 63 1.1e-06 19.4 0.0 1 1 8e-08 1.5e-06 19.0 0.0 7 53 44 89 34 93 0.85 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_8 - 138 HTH_17 PF12728.2 51 1.2e-07 22.6 0.0 1 1 1.1e-08 2.2e-07 21.7 0.0 2 45 4 48 3 51 0.85 # 7284 # 7697 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_12 - 195 ATP-synt_B PF00430.13 132 0.0022 8.4 11.4 1 2 0.00076 0.014 5.7 3.8 26 89 16 79 14 80 0.94 # 10991 # 11575 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_12 - 195 ATP-synt_B PF00430.13 132 0.0022 8.4 11.4 2 2 7.1e-05 0.0014 9.1 3.8 32 79 62 110 55 114 0.85 # 10991 # 11575 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 96 MarR_2 PF12802.2 62 3e-07 20.7 0.1 1 1 5.6e-08 1.1e-06 18.9 0.0 11 41 39 67 36 69 0.92 # 6440 # 6727 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4e342604-fa7e-4506-b0bd-60fa141e09b7 # Target file: checkm_output/bins/pm1418/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1418/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4e342604-fa7e-4506-b0bd-60fa141e09b7 checkm_output/bins/pm1418/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:38 2017 # [ok]