# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_36 - 76 Zn_Tnp_IS1 PF03811.8 36 2.7e-05 16.8 1.4 1 1 3e-07 3.6e-05 16.4 0.4 18 35 2 19 1 20 0.92 # 29763 # 29990 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.522 2_22 - 245 HTH_41 PF14502.1 48 0.00012 14.8 0.0 1 1 1.9e-06 0.00023 14.0 0.0 2 36 31 65 30 75 0.91 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_8 - 378 ADH_N PF08240.7 109 7.5e-29 92.9 1.5 1 1 1.5e-30 1.7e-28 91.7 1.1 2 102 26 134 25 142 0.88 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 1_20 - 103 TIGR01173 TIGR01173 452 1e-09 30.5 2.3 1 1 1.1e-11 1.3e-09 30.2 2.3 351 437 4 94 2 99 0.86 # 17320 # 17628 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.447 2_6 - 294 HTH_AsnC-type PF13404.1 42 0.00062 12.5 0.5 1 2 9.6e-05 0.012 8.4 0.0 20 42 18 40 14 40 0.91 # 7845 # 8726 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.600 2_6 - 294 HTH_AsnC-type PF13404.1 42 0.00062 12.5 0.5 2 2 0.016 1.9 1.3 0.3 10 26 175 191 175 193 0.92 # 7845 # 8726 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.600 2_24 - 341 SIS PF01380.17 131 2.7e-23 75.2 0.0 1 2 5e-13 6e-11 35.3 0.0 6 122 45 163 41 168 0.92 # 23958 # 24980 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 2_24 - 341 SIS PF01380.17 131 2.7e-23 75.2 0.0 2 2 7.8e-14 9.4e-12 37.9 0.0 4 86 207 291 204 295 0.89 # 23958 # 24980 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_25 - 89 Cdd1 PF11731.3 93 0.00063 12.9 0.0 1 1 1.2e-05 0.0014 11.7 0.0 11 45 3 37 1 49 0.86 # 19883 # 20149 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.468 1_8 - 378 FAD_binding_3 PF01494.14 356 0.00019 13.7 0.2 1 1 2.3e-06 0.00027 13.2 0.2 3 37 178 213 177 238 0.88 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 1_25 - 89 HHH_5 PF14520.1 60 1.8e-05 18.1 0.0 1 1 1.7e-07 2.1e-05 17.9 0.0 5 38 4 37 2 72 0.88 # 19883 # 20149 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.468 2_30 - 79 DUF2171 PF09939.4 67 1.1e-26 85.9 4.5 1 1 1e-28 1.2e-26 85.7 4.5 2 66 7 72 6 73 0.97 # 30740 # 30976 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_32 - 293 rve_3 PF13683.1 67 7.3e-18 57.1 0.0 1 1 1.8e-19 2.1e-17 55.6 0.0 2 67 216 281 215 281 0.97 # 25717 # 26595 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 2_22 - 245 HTH_DeoR PF08220.7 57 1.2e-06 21.2 0.0 1 1 1.9e-08 2.2e-06 20.3 0.0 19 52 40 73 24 78 0.88 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 2_29 - 267 TIGR01830 TIGR01830 239 1.7e-70 230.2 0.1 1 1 1.7e-72 2e-70 230.0 0.1 1 238 10 256 10 257 0.95 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_49 - 507 DUF3584 PF12128.3 1201 0.011 6.2 9.0 1 1 0.00012 0.015 5.7 9.0 597 662 19 85 3 94 0.76 # 43543 # 45063 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 2_6 - 294 HTH_8 PF02954.14 42 0.00061 12.5 0.4 1 1 2.4e-05 0.0029 10.4 0.0 20 39 17 36 11 39 0.78 # 7845 # 8726 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.600 2_38 - 196 TetR_N PF00440.18 47 3.8e-16 51.7 0.1 1 1 9.6e-18 3.8e-16 51.7 0.1 1 46 15 60 15 61 0.97 # 34055 # 34642 # 1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 2_10 - 199 TetR_N PF00440.18 47 4.7e-16 51.4 0.1 1 1 2.1e-17 8.6e-16 50.6 0.1 1 46 12 57 12 58 0.95 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 1_46 - 336 TetR_N PF00440.18 47 0.001 11.9 0.7 1 1 6.9e-05 0.0028 10.5 0.7 16 32 6 22 4 24 0.92 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_30 - 403 CbiA PF01656.18 195 1.6e-21 69.7 0.0 1 1 2.7e-23 3.3e-21 68.7 0.0 1 153 114 306 114 348 0.77 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_34 - 343 Rep_3 PF01051.16 222 5.9e-33 107.4 1.1 1 1 7e-35 8.4e-33 106.9 1.1 3 215 24 282 23 286 0.91 # 27413 # 28441 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.476 1_32 - 293 rve PF00665.21 120 2.3e-25 82.2 0.0 1 1 2.9e-27 3.5e-25 81.7 0.0 3 119 123 243 121 244 0.97 # 25717 # 26595 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_62 - 366 ATPgrasp_Ter PF15632.1 330 5.3e-108 353.7 0.0 1 1 4.9e-110 5.9e-108 353.6 0.0 2 321 7 341 6 350 0.96 # 55788 # 56885 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.606 1_33 - 132 CPSase_L_D3 PF02787.14 123 0.00075 12.5 0.3 1 2 0.00028 0.034 7.1 0.0 7 36 23 52 18 63 0.84 # 26553 # 26948 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.515 1_33 - 132 CPSase_L_D3 PF02787.14 123 0.00075 12.5 0.3 2 2 0.0034 0.4 3.6 0.0 44 81 88 123 81 130 0.77 # 26553 # 26948 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.515 1_33 - 132 HTH_Tnp_1 PF01527.15 76 7.5e-22 70.3 0.4 1 1 1.1e-23 1.3e-21 69.6 0.1 2 74 18 97 17 99 0.91 # 26553 # 26948 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.515 2_34 - 90 Ribosomal_S7 PF00177.16 148 0.00027 13.7 0.0 1 1 4.8e-06 0.00058 12.6 0.0 18 67 29 78 2 83 0.79 # 32192 # 32461 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.485 1_43 - 314 TIGR00464 TIGR00464 470 2.2e-07 22.9 1.2 1 1 2.3e-09 2.8e-07 22.5 1.2 321 458 172 304 134 311 0.84 # 36134 # 37075 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.514 1_30 - 403 MipZ PF09140.6 261 2.2e-05 16.8 0.5 1 2 0.0016 0.2 3.8 0.0 2 50 113 166 112 193 0.72 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_30 - 403 MipZ PF09140.6 261 2.2e-05 16.8 0.5 2 2 1.2e-05 0.0014 10.9 0.1 90 135 239 284 232 289 0.91 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_21 - 123 Sigma70_r4 PF04545.11 50 0.00011 14.7 0.0 1 1 1.8e-06 0.00021 13.8 0.0 16 43 72 99 65 101 0.90 # 18354 # 18722 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_21 - 123 HTH_37 PF13744.1 80 1.9e-06 20.8 0.0 1 1 2.4e-08 2.9e-06 20.2 0.0 30 64 75 110 69 114 0.85 # 18354 # 18722 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_34 - 343 RepA_C PF04796.7 161 0.00039 13.2 0.2 1 2 9.3e-05 0.011 8.5 0.0 28 143 117 225 106 228 0.69 # 27413 # 28441 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.476 1_34 - 343 RepA_C PF04796.7 161 0.00039 13.2 0.2 2 2 0.006 0.72 2.6 0.0 111 130 224 243 217 251 0.86 # 27413 # 28441 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 245 HTH_27 PF13463.1 68 0.00025 14.5 0.0 1 1 3.7e-06 0.00044 13.8 0.0 19 50 36 67 19 76 0.86 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_54 - 249 MerR_1 PF13411.1 69 1.1e-09 31.2 0.0 1 1 3e-11 1.8e-09 30.5 0.0 1 67 4 67 4 69 0.92 # 48694 # 49440 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_33 - 132 MerR_1 PF13411.1 69 0.00042 13.3 0.1 1 1 2.3e-05 0.0014 11.6 0.0 1 24 40 63 40 75 0.93 # 26553 # 26948 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.515 1_17 - 265 HTH_AraC PF00165.18 42 2.5e-15 49.0 0.1 1 2 1.6e-08 1.9e-06 20.8 0.0 3 42 173 212 171 212 0.93 # 15318 # 16112 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 1_17 - 265 HTH_AraC PF00165.18 42 2.5e-15 49.0 0.1 2 2 4.8e-10 5.7e-08 25.6 0.0 3 41 221 260 220 261 0.94 # 15318 # 16112 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 2_6 - 294 HTH_1 PF00126.22 60 6e-28 89.6 0.6 1 1 3.8e-29 1.2e-27 88.7 0.6 1 60 3 62 3 62 0.99 # 7845 # 8726 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.600 1_6 - 295 HTH_1 PF00126.22 60 4.3e-23 74.1 1.2 1 1 2.4e-24 7.3e-23 73.3 1.2 2 60 8 66 7 66 0.97 # 4307 # 5191 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_39 - 300 HTH_1 PF00126.22 60 8.1e-23 73.2 0.4 1 1 6.1e-24 1.8e-22 72.1 0.4 1 60 7 66 7 66 0.98 # 32439 # 33338 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.579 1_15 - 306 HTH_1 PF00126.22 60 9.1e-21 66.6 0.6 1 1 6.5e-22 1.9e-20 65.6 0.6 1 60 4 63 4 63 0.97 # 13028 # 13945 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.548 2_29 - 267 adh_short_C2 PF13561.1 241 3.1e-32 105.4 0.0 1 1 3.2e-34 3.8e-32 105.1 0.0 5 241 16 257 14 257 0.91 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_8 - 378 HI0933_like PF03486.9 409 1.7e-05 16.6 0.4 1 1 1.8e-07 2.2e-05 16.2 0.4 2 53 178 229 177 247 0.73 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 2_29 - 267 adh_short PF00106.20 167 5.6e-39 126.9 4.1 1 1 6.1e-41 7.3e-39 126.5 4.1 2 166 9 183 8 184 0.95 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 2_22 - 245 GntR PF00392.16 64 6.5e-25 79.6 0.0 1 1 8.2e-27 9.9e-25 79.0 0.0 1 64 12 75 12 75 0.99 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_21 - 123 HTH_3 PF01381.17 55 2.3e-11 36.6 0.0 1 1 2.5e-13 3e-11 36.2 0.0 8 53 75 119 69 121 0.91 # 18354 # 18722 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 2_29 - 267 Epimerase PF01370.16 236 1.3e-05 17.9 0.1 1 1 1.7e-07 2.1e-05 17.2 0.1 1 65 10 82 10 185 0.79 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_33 - 132 HTH_23 PF13384.1 50 1e-09 31.0 0.2 1 1 1.2e-10 3.7e-09 29.3 0.0 3 46 24 68 22 72 0.90 # 26553 # 26948 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.515 2_10 - 199 HTH_23 PF13384.1 50 1.5e-06 21.0 0.0 1 1 1.4e-07 4.1e-06 19.6 0.0 10 49 16 59 5 60 0.80 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 1_17 - 265 HTH_23 PF13384.1 50 0.00043 13.1 1.0 1 2 0.0027 0.082 5.9 0.0 11 40 169 201 159 206 0.77 # 15318 # 16112 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 1_17 - 265 HTH_23 PF13384.1 50 0.00043 13.1 1.0 2 2 0.011 0.32 4.0 0.0 5 29 213 238 209 239 0.70 # 15318 # 16112 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 1_36 - 76 HTH_23 PF13384.1 50 0.0012 11.7 0.0 1 1 5.8e-05 0.0017 11.2 0.0 7 40 37 70 35 74 0.92 # 29763 # 29990 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.522 1_21 - 123 HTH_19 PF12844.2 64 2.2e-06 20.9 0.0 1 2 0.061 2.5 1.5 0.0 33 59 11 37 4 41 0.75 # 18354 # 18722 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_21 - 123 HTH_19 PF12844.2 64 2.2e-06 20.9 0.0 2 2 7.2e-07 2.9e-05 17.3 0.0 7 48 71 111 69 115 0.85 # 18354 # 18722 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_46 - 336 HTH_19 PF12844.2 64 9e-05 15.7 0.0 1 2 0.0002 0.008 9.5 0.0 8 40 2 35 1 54 0.82 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_46 - 336 HTH_19 PF12844.2 64 9e-05 15.7 0.0 2 2 0.017 0.7 3.2 0.0 33 60 222 251 221 253 0.87 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 2_10 - 199 HTH_19 PF12844.2 64 0.00097 12.4 0.0 1 1 0.0001 0.0041 10.4 0.0 12 35 27 50 20 70 0.83 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 1_33 - 132 HTH_29 PF13551.1 112 1.6e-06 21.4 0.4 1 1 4.6e-08 2.7e-06 20.7 0.1 8 69 36 96 28 116 0.72 # 26553 # 26948 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.515 2_10 - 199 HTH_29 PF13551.1 112 9.2e-05 15.8 0.1 1 1 3.7e-06 0.00022 14.5 0.0 10 46 26 61 16 89 0.89 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 1_25 - 89 IMS_HHH PF11798.3 32 1.3e-06 21.5 0.2 1 1 2e-08 2.4e-06 20.6 0.2 12 32 5 25 2 25 0.93 # 19883 # 20149 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.468 1_36 - 76 HTH_Tnp_IS1 PF12759.2 46 5.2e-27 86.3 0.0 1 1 5.9e-29 7.1e-27 85.8 0.0 1 46 27 72 27 72 0.99 # 29763 # 29990 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.522 1_33 - 132 HTH_28 PF13518.1 52 4.9e-08 26.1 0.0 1 1 8.2e-10 4.9e-08 26.1 0.0 1 42 27 69 27 73 0.91 # 26553 # 26948 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.515 2_10 - 199 HTH_28 PF13518.1 52 0.00015 15.0 0.0 1 1 6.7e-06 0.0004 13.6 0.0 6 45 21 60 16 62 0.85 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 1_31 - 324 HTH_24 PF13412.1 48 7.9e-05 15.2 0.2 1 2 2.8e-05 0.0017 10.9 0.0 17 37 158 178 156 181 0.90 # 23833 # 24804 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.499 1_31 - 324 HTH_24 PF13412.1 48 7.9e-05 15.2 0.2 2 2 0.049 3 0.6 0.0 16 26 215 226 200 228 0.80 # 23833 # 24804 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.499 2_6 - 294 HTH_24 PF13412.1 48 9.6e-05 15.0 0.2 1 1 7.7e-06 0.00046 12.8 0.0 24 43 22 41 14 42 0.89 # 7845 # 8726 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.600 1_17 - 265 HTH_18 PF12833.2 81 1.9e-21 69.2 0.2 1 1 3.5e-23 4.2e-21 68.1 0.2 1 79 184 260 184 262 0.97 # 15318 # 16112 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.521 1_39 - 300 HTH_30 PF13556.1 59 0.00022 14.0 0.5 1 1 3.5e-06 0.00042 13.1 0.5 13 54 20 62 11 64 0.81 # 32439 # 33338 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.579 1_46 - 336 HTH_10 PF04967.7 53 0.00072 12.3 0.1 1 1 1.4e-05 0.0016 11.2 0.1 22 44 5 27 3 29 0.91 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_21 - 123 HTH_31 PF13560.1 64 1.9e-06 21.2 0.0 1 1 4.7e-08 2.8e-06 20.7 0.0 9 60 71 120 66 121 0.88 # 18354 # 18722 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_46 - 336 HTH_31 PF13560.1 64 0.00014 15.3 0.7 1 1 2.3e-06 0.00014 15.3 0.7 9 51 1 48 1 61 0.82 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_34 - 343 HTH_36 PF13730.1 55 9.7e-05 15.7 0.0 1 2 0.071 4.3 0.8 0.0 27 44 120 137 100 141 0.75 # 27413 # 28441 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.476 1_34 - 343 HTH_36 PF13730.1 55 9.7e-05 15.7 0.0 2 2 3.5e-05 0.0021 11.4 0.0 6 55 218 271 216 271 0.80 # 27413 # 28441 # 1 # ID=1_34;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.476 2_22 - 245 HTH_36 PF13730.1 55 0.00064 13.1 0.0 1 1 1.9e-05 0.0012 12.2 0.0 25 53 35 63 20 65 0.85 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 2_19 - 190 DrsE PF02635.10 122 7.9e-13 41.7 0.1 1 1 9.2e-15 1.1e-12 41.3 0.1 12 120 63 180 54 181 0.89 # 19037 # 19606 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.558 2_18 - 143 ASCH PF04266.9 105 5.9e-24 77.7 0.0 1 1 6e-26 7.1e-24 77.4 0.0 5 104 27 133 18 134 0.92 # 18535 # 18963 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 403 VirC1 PF07015.6 231 7.3e-05 15.1 0.0 1 2 0.044 5.3 -0.8 0.0 4 23 114 133 112 140 0.80 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_30 - 403 VirC1 PF07015.6 231 7.3e-05 15.1 0.0 2 2 3.5e-06 0.00041 12.6 0.0 81 139 245 304 228 353 0.85 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_54 - 249 MerR PF00376.18 38 3.5e-05 16.5 0.0 1 1 5.5e-07 6.6e-05 15.6 0.0 2 29 6 33 5 36 0.85 # 48694 # 49440 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.549 1_33 - 132 CENP-B_N PF04218.8 53 3.4e-06 19.6 0.1 1 1 5.2e-08 6.2e-06 18.8 0.1 4 42 20 59 18 65 0.86 # 26553 # 26948 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.515 1_46 - 336 HHH PF00633.18 30 0.0012 11.8 0.1 1 1 2.5e-05 0.0031 10.5 0.1 8 28 7 27 5 28 0.90 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_63 - 377 TIGR00336 TIGR00336 173 0.00047 12.8 0.1 1 1 1.4e-05 0.0017 11.0 0.0 107 159 151 202 145 213 0.80 # 56885 # 58015 # 1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_39 - 300 Arg_repressor PF01316.16 70 0.00054 12.7 0.0 1 1 1.1e-05 0.0014 11.4 0.0 28 50 23 45 21 49 0.94 # 32439 # 33338 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.579 2_29 - 267 Eno-Rase_NADH_b PF12242.3 78 1.7e-05 17.8 0.3 1 1 2.7e-07 3.2e-05 16.9 0.3 42 73 10 39 2 44 0.71 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_8 - 378 AlaDh_PNT_C PF01262.16 168 0.00025 13.8 0.1 1 1 4.1e-06 0.00049 12.8 0.1 16 73 171 229 164 240 0.84 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 4_1 - 168 DDE_Tnp_IS1 PF03400.8 131 2.9e-76 247.0 1.7 1 1 1.2e-77 3.5e-76 246.8 1.7 1 131 37 167 37 167 0.99 # 250 # 753 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_35 - 89 DDE_Tnp_IS1 PF03400.8 131 7e-44 142.3 0.7 1 1 2.5e-45 7.6e-44 142.1 0.7 44 131 1 88 1 88 0.98 # 29346 # 29612 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.483 1_1 - 37 DDE_Tnp_IS1 PF03400.8 131 1.3e-18 60.6 0.3 1 1 4.5e-20 1.3e-18 60.5 0.3 96 131 1 36 1 36 0.98 # 2 # 112 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.468 3_7 - 37 DDE_Tnp_IS1 PF03400.8 131 1.3e-18 60.6 0.3 1 1 4.5e-20 1.3e-18 60.5 0.3 96 131 1 36 1 36 0.98 # 4017 # 4127 # -1 # ID=3_7;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.459 2_24 - 341 TIGR01135 TIGR01135 607 3.1e-21 68.2 0.0 1 1 5.7e-23 6.9e-21 67.1 0.0 270 598 23 332 12 335 0.84 # 23958 # 24980 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 2_30 - 79 PRC PF05239.11 79 5.5e-06 19.4 0.6 1 1 5.8e-08 7e-06 19.1 0.6 12 77 11 69 5 71 0.82 # 30740 # 30976 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_21 - 123 HTH_26 PF13443.1 63 6.5e-05 16.3 0.0 1 1 1.6e-06 9.6e-05 15.8 0.0 9 57 75 121 73 122 0.93 # 18354 # 18722 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 2_10 - 199 HTH_26 PF13443.1 63 0.00021 14.7 0.0 1 2 0.0002 0.012 9.0 0.0 8 45 22 61 19 64 0.84 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 2_10 - 199 HTH_26 PF13443.1 63 0.00021 14.7 0.0 2 2 0.014 0.85 3.1 0.0 4 54 116 170 115 172 0.66 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 2_1 - 358 TIGR00634 TIGR00634 563 7.8e-05 14.5 0.2 1 1 9.5e-07 0.00011 14.0 0.2 337 442 210 312 203 321 0.91 # 3 # 1076 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.603 2_10 - 199 HTH_17 PF12728.2 51 0.00026 14.4 0.0 1 1 6.6e-06 0.0008 12.9 0.0 3 21 29 47 28 51 0.92 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 2_22 - 245 HTH_11 PF08279.7 55 0.00023 14.0 0.0 1 1 3.4e-06 0.00041 13.2 0.0 17 43 37 63 19 72 0.79 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_6 - 295 MarR_2 PF12802.2 62 0.00033 13.5 0.1 1 1 1.1e-05 0.00069 12.5 0.1 28 48 26 46 9 59 0.88 # 4307 # 5191 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_46 - 336 MarR_2 PF12802.2 62 0.00041 13.2 0.1 1 2 0.00013 0.0076 9.1 0.0 20 42 5 27 1 29 0.84 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_46 - 336 MarR_2 PF12802.2 62 0.00041 13.2 0.1 2 2 0.046 2.8 0.9 0.0 25 38 236 249 235 253 0.89 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_46 - 336 LacI PF00356.16 46 4.8e-18 57.7 0.3 1 1 9.8e-20 1.2e-17 56.5 0.3 1 44 8 54 8 56 0.95 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_62 - 366 ATP-grasp_4 PF13535.1 184 4.4e-21 68.6 0.0 1 1 1.3e-22 1.5e-20 66.8 0.0 2 182 116 299 115 302 0.91 # 55788 # 56885 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.606 1_46 - 336 HTH_Crp_2 PF13545.1 76 0.0004 13.4 0.1 1 1 7.6e-05 0.003 10.5 0.0 29 50 7 28 3 30 0.92 # 39662 # 40669 # -1 # ID=1_46;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.591 1_31 - 324 HTH_Crp_2 PF13545.1 76 0.00086 12.3 0.0 1 1 7.5e-05 0.003 10.6 0.0 16 51 146 181 141 182 0.81 # 23833 # 24804 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.499 2_22 - 245 HTH_Crp_2 PF13545.1 76 0.00095 12.2 0.0 1 1 3.9e-05 0.0016 11.5 0.0 29 60 36 67 5 79 0.69 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 2_22 - 245 HTH_Mga PF08280.6 59 0.00027 13.9 0.0 1 2 1.8e-05 0.0021 11.0 0.0 23 44 39 60 33 66 0.90 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 2_22 - 245 HTH_Mga PF08280.6 59 0.00027 13.9 0.0 2 2 0.09 11 -0.9 0.0 15 31 106 122 105 122 0.83 # 22209 # 22943 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_49 - 507 AAA_13 PF13166.1 712 0.0086 7.6 3.3 1 1 0.00011 0.013 7.1 3.3 410 466 23 79 16 88 0.91 # 43543 # 45063 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_30 - 403 AAA_31 PF13614.1 157 5.4e-05 16.3 0.0 1 2 0.0018 0.22 4.6 0.0 2 80 113 195 112 220 0.73 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_30 - 403 AAA_31 PF13614.1 157 5.4e-05 16.3 0.0 2 2 7.2e-05 0.0086 9.2 0.0 109 147 239 276 235 281 0.79 # 22625 # 23833 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_21 - 123 TIGR02392 TIGR02392 270 0.00095 11.7 0.0 1 1 1e-05 0.0012 11.3 0.0 136 172 73 109 56 113 0.82 # 18354 # 18722 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 2_30 - 79 TGS PF02824.16 60 0.0003 13.8 0.3 1 1 3.6e-06 0.00043 13.3 0.3 28 58 5 35 4 37 0.89 # 30740 # 30976 # 1 # ID=2_30;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.485 1_44 - 110 Yae1_N PF09811.4 39 1.3e-08 27.4 13.1 1 2 1.7e-06 6.9e-05 15.5 5.2 15 37 37 59 33 60 0.61 # 37161 # 37490 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_44 - 110 Yae1_N PF09811.4 39 1.3e-08 27.4 13.1 2 2 5.7e-09 2.3e-07 23.5 7.5 1 27 47 73 47 81 0.90 # 37161 # 37490 # 1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.552 1_43 - 314 Yae1_N PF09811.4 39 4.1e-07 22.7 5.6 1 1 1.9e-08 7.8e-07 21.8 5.6 5 27 254 276 252 283 0.63 # 36134 # 37075 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.514 1_45 - 318 Yae1_N PF09811.4 39 0.041 6.7 8.5 1 1 0.00028 0.011 8.5 5.3 15 38 253 276 248 280 0.82 # 37685 # 38638 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.518 1_8 - 378 ADH_zinc_N PF00107.21 130 1.3e-15 50.3 3.3 1 1 1.2e-16 1.5e-14 46.9 3.3 1 111 186 319 186 334 0.91 # 6884 # 8017 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.522 2_29 - 267 KR PF08659.5 181 1.7e-19 63.3 2.4 1 1 2.7e-21 3.2e-19 62.4 2.4 3 166 10 182 9 194 0.90 # 29728 # 30528 # -1 # ID=2_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.569 1_25 - 89 DNA_pol_lambd_f PF10391.4 52 0.0013 11.5 0.0 1 1 1.7e-05 0.002 10.9 0.0 6 36 8 38 3 45 0.86 # 19883 # 20149 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.468 1_32 - 293 HTH_21 PF13276.1 60 9.7e-19 60.4 2.5 1 2 1.2e-19 1.4e-17 56.7 0.5 5 57 51 106 47 115 0.80 # 25717 # 26595 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_32 - 293 HTH_21 PF13276.1 60 9.7e-19 60.4 2.5 2 2 0.0061 0.74 3.1 0.1 13 33 266 288 258 291 0.87 # 25717 # 26595 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 2_10 - 199 Phage_AlpA PF05930.7 51 0.00015 14.6 0.0 1 1 3e-06 0.00036 13.4 0.0 7 24 31 48 28 53 0.88 # 11991 # 12587 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.559 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ba8c6280-1f21-4d4d-8fad-fac5f81ea97d # Target file: checkm_output/bins/pm1417/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1417/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ba8c6280-1f21-4d4d-8fad-fac5f81ea97d checkm_output/bins/pm1417/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:39 2017 # [ok]