# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_25 - 92 Zn_Tnp_IS1 PF03811.8 36 5.6e-24 75.8 4.5 1 1 4.8e-25 1.1e-23 74.9 4.5 1 36 1 36 1 36 0.99 # 22828 # 23103 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_13 - 92 Zn_Tnp_IS1 PF03811.8 36 1.1e-23 74.9 4.5 1 1 4.8e-25 1.1e-23 74.9 4.5 1 36 1 36 1 36 0.99 # 11362 # 11637 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_31 - 92 Zn_Tnp_IS1 PF03811.8 36 7.8e-22 69.0 8.1 1 1 6.7e-23 1.5e-21 68.0 8.1 1 36 1 36 1 36 0.99 # 28229 # 28504 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_32 - 111 HTH_IclR PF09339.5 52 1.1e-06 20.6 0.3 1 1 5.7e-08 1.9e-06 19.8 0.3 12 51 26 65 24 66 0.90 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_15 - 240 HTH_IclR PF09339.5 52 0.00019 13.4 0.7 1 1 1.9e-05 0.00066 11.7 0.0 22 48 37 63 29 65 0.94 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_17 - 515 ABC_tran PF00005.22 137 4.6e-43 139.2 0.0 1 2 2.8e-29 6.3e-28 90.1 0.0 1 137 23 171 23 171 0.96 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_17 - 515 ABC_tran PF00005.22 137 4.6e-43 139.2 0.0 2 2 5.9e-16 1.3e-14 47.0 0.0 3 133 281 432 279 435 0.83 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 2_3 - 236 ABC_tran PF00005.22 137 3e-32 104.1 0.0 1 1 1.8e-33 4.2e-32 103.7 0.0 1 135 21 162 21 164 0.93 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 ABC_tran PF00005.22 137 4.2e-27 87.5 0.0 1 1 2.7e-28 6e-27 87.0 0.0 1 137 366 519 366 519 0.87 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 3_9 - 186 HTH_22 PF13309.1 64 0.00013 14.1 0.0 1 1 1.3e-05 0.00092 11.4 0.0 47 61 163 177 161 179 0.91 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 1_3 - 424 Cdd1 PF11731.3 93 0.00028 13.2 0.0 1 1 1.1e-05 0.00077 11.8 0.0 10 47 177 214 143 227 0.86 # 1384 # 2655 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_3 - 236 FtsK_SpoIIIE PF01580.13 205 0.00091 11.1 2.7 1 1 8.1e-06 0.00055 11.8 0.4 30 59 23 52 13 55 0.88 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_14 - 204 MobB PF03205.9 140 1.2e-06 20.7 0.0 1 2 9.6e-08 6.5e-06 18.3 0.0 3 36 6 39 4 100 0.90 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 3_14 - 204 MobB PF03205.9 140 1.2e-06 20.7 0.0 2 2 0.039 2.6 0.1 0.0 58 91 164 194 148 202 0.78 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_32 - 111 NinF PF05810.7 58 0.00027 13.2 1.5 1 1 6.4e-06 0.00044 12.5 1.5 13 40 65 93 61 98 0.89 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_32 - 111 HTH_34 PF13601.1 80 4e-05 16.0 0.0 1 1 1.7e-06 5.8e-05 15.5 0.0 2 48 18 66 17 70 0.85 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_36 - 118 HTH_34 PF13601.1 80 8.5e-05 15.0 0.0 1 1 3.8e-06 0.00013 14.4 0.0 2 45 18 61 17 67 0.93 # 31861 # 32214 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_32 - 111 MarR PF01047.17 59 9e-06 17.8 0.0 1 1 4.3e-07 1.5e-05 17.1 0.0 15 51 30 66 28 69 0.93 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_36 - 118 MarR PF01047.17 59 4.2e-05 15.6 0.3 1 1 2.3e-06 7.7e-05 14.8 0.1 4 50 17 63 15 66 0.92 # 31861 # 32214 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_4 - 598 DUF3584 PF12128.3 1201 0.0013 8.4 0.1 1 1 2.4e-05 0.0017 8.1 0.1 22 37 381 396 368 397 0.82 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 3_9 - 186 TetR_N PF00440.18 47 0.00016 13.7 0.0 1 2 0.083 5.6 -0.9 0.0 13 21 4 12 3 12 0.91 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 3_9 - 186 TetR_N PF00440.18 47 0.00016 13.7 0.0 2 2 1.5e-05 0.001 11.1 0.0 20 37 162 179 149 182 0.91 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 1_5 - 402 CbiA PF01656.18 195 1e-18 59.8 0.0 1 1 2.8e-20 1.9e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 3711 # 4916 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 3_14 - 204 KTI12 PF08433.5 270 0.00047 11.7 0.0 1 1 9.7e-06 0.00066 11.2 0.0 8 43 10 45 6 57 0.83 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_4 - 325 Sigma70_r4_2 PF08281.7 54 0.00036 12.4 0.1 1 1 1.4e-05 0.00093 11.1 0.1 23 50 157 184 152 185 0.88 # 2737 # 3711 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_7 - 289 Rep_3 PF01051.16 222 8.2e-49 158.5 0.0 1 1 1.5e-50 1e-48 158.2 0.0 3 213 65 278 63 283 0.95 # 5958 # 6824 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.441 4_1 - 235 rve PF00665.21 120 2.2e-13 42.7 0.1 1 2 0.015 1 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 235 rve PF00665.21 120 2.2e-13 42.7 0.1 2 2 6.1e-14 4.1e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 240 Fe_dep_repress PF01325.14 60 9.3e-07 21.2 0.0 1 1 4.2e-08 2.9e-06 19.6 0.0 24 59 35 70 28 71 0.92 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 2_4 - 598 AAA_23 PF13476.1 202 1.8e-06 20.7 0.0 1 1 1.2e-07 2.8e-06 20.1 0.0 11 39 367 396 359 398 0.79 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_3 - 236 AAA_23 PF13476.1 202 5.7e-05 15.8 0.1 1 1 3.7e-06 8.3e-05 15.3 0.1 14 40 25 52 19 68 0.82 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 515 AAA_23 PF13476.1 202 0.00012 14.8 0.0 1 1 8.7e-06 0.0002 14.1 0.0 7 39 20 53 15 55 0.69 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 2_3 - 236 AAA_24 PF13479.1 213 5.3e-05 15.2 0.0 1 1 1e-06 7.1e-05 14.8 0.0 5 50 33 73 29 99 0.71 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 AAA_30 PF13604.1 196 0.0003 12.8 0.0 1 1 7.6e-06 0.00052 12.0 0.0 17 50 375 408 369 413 0.85 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_4 - 325 CPSase_L_D3 PF02787.14 123 0.00018 13.6 0.2 1 1 7.2e-06 0.00049 12.3 0.2 48 97 133 185 124 190 0.84 # 2737 # 3711 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 2_3 - 236 SMC_N PF02463.14 220 2e-06 19.5 1.2 1 1 6.7e-06 0.00015 13.4 1.2 25 191 32 186 20 210 0.66 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 SMC_N PF02463.14 220 0.00013 13.5 0.1 1 1 5.6e-05 0.0013 10.4 0.1 26 44 378 396 367 566 0.69 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_17 - 515 SMC_N PF02463.14 220 0.00084 10.9 0.2 1 1 0.0002 0.0045 8.5 0.0 25 44 34 53 17 57 0.75 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 3_9 - 186 HTH_Tnp_1 PF01527.15 76 7.3e-05 15.1 0.0 1 1 5.8e-06 0.0002 13.7 0.0 13 44 148 179 143 183 0.85 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 4_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00017 13.9 0.3 1 1 1.1e-05 0.00037 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 4_1 - 235 DDE_3 PF13358.1 146 0.00047 12.3 0.0 1 1 2.1e-05 0.0014 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_5 - 402 MipZ PF09140.6 261 1.3e-06 20.0 0.0 1 2 0.0027 0.18 3.1 0.0 3 50 111 163 109 193 0.73 # 3711 # 4916 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_5 - 402 MipZ PF09140.6 261 1.3e-06 20.0 0.0 2 2 8.7e-07 5.9e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 3711 # 4916 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 2_9 - 327 DDE_Tnp_1 PF01609.16 213 8.5e-36 115.8 0.1 1 1 2.3e-37 1.6e-35 114.9 0.1 5 212 138 312 135 313 0.90 # 8197 # 9177 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 2_4 - 598 AAA_21 PF13304.1 303 2.2e-11 36.5 0.4 1 2 1.1e-07 2.6e-06 19.9 0.1 3 20 380 397 378 441 0.82 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_4 - 598 AAA_21 PF13304.1 303 2.2e-11 36.5 0.4 2 2 4.4e-06 0.0001 14.7 0.0 235 270 489 521 465 521 0.89 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_3 - 236 AAA_21 PF13304.1 303 1.7e-08 27.0 0.2 1 2 1.4e-06 3.2e-05 16.3 0.1 2 24 34 56 33 103 0.79 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_3 - 236 AAA_21 PF13304.1 303 1.7e-08 27.0 0.2 2 2 0.00022 0.0049 9.1 0.0 237 285 136 181 107 192 0.84 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 515 AAA_21 PF13304.1 303 5.7e-07 22.1 0.1 1 2 8.2e-06 0.00018 13.8 0.0 2 22 36 56 35 73 0.83 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_17 - 515 AAA_21 PF13304.1 303 5.7e-07 22.1 0.1 2 2 0.0017 0.038 6.2 0.0 205 297 107 201 99 201 0.79 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 2_4 - 598 AAA PF00004.24 132 0.00071 12.2 0.0 1 1 7.7e-05 0.0052 9.4 0.0 3 22 381 400 379 540 0.56 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_4 - 325 HTH_37 PF13744.1 80 0.00061 12.0 2.6 1 1 3e-05 0.0021 10.3 0.2 27 53 156 182 134 185 0.87 # 2737 # 3711 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_15 - 240 Rrf2 PF02082.15 83 6.6e-05 15.4 0.0 1 1 1.4e-05 0.00049 12.6 0.0 22 56 31 64 23 70 0.87 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_32 - 111 Rrf2 PF02082.15 83 0.00046 12.7 0.0 1 1 2.5e-05 0.00085 11.8 0.0 20 58 28 65 18 67 0.85 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_36 - 118 HTH_27 PF13463.1 68 8.2e-06 18.5 0.2 1 1 4.9e-07 1.7e-05 17.5 0.1 23 66 35 75 18 76 0.87 # 31861 # 32214 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_15 - 240 HTH_27 PF13463.1 68 0.00023 13.9 0.0 1 1 5.3e-05 0.0018 11.0 0.0 16 48 31 63 26 70 0.90 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 3_14 - 204 cobW PF02492.14 178 6.2e-35 112.6 0.0 1 1 2.2e-36 7.4e-35 112.3 0.0 3 173 6 172 4 177 0.92 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 2_4 - 598 cobW PF02492.14 178 0.00066 11.5 0.1 1 1 3.4e-05 0.0011 10.7 0.1 3 37 379 412 377 418 0.80 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_3 - 236 AAA_16 PF13191.1 185 2.4e-05 16.7 0.6 1 1 1.8e-06 4e-05 16.0 0.6 20 44 27 51 17 201 0.88 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 AAA_16 PF13191.1 185 0.00013 14.4 0.0 1 1 9.3e-06 0.00021 13.7 0.0 19 60 371 414 359 544 0.76 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 3_14 - 204 AAA_16 PF13191.1 185 0.00014 14.2 0.0 1 1 9.4e-06 0.00021 13.6 0.0 31 58 10 37 8 95 0.83 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 2_3 - 236 AAA_22 PF13401.1 131 3e-06 19.8 1.0 1 1 1.8e-06 6.1e-05 15.6 1.0 4 122 31 192 27 199 0.63 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 AAA_22 PF13401.1 131 0.00039 12.9 0.1 1 1 2.3e-05 0.00078 12.0 0.1 7 29 379 401 373 547 0.89 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_17 - 515 AAA_29 PF13555.1 62 1.8e-06 19.9 0.1 1 1 2.4e-07 5.4e-06 18.3 0.1 15 42 26 52 18 55 0.79 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 2_3 - 236 AAA_29 PF13555.1 62 1.7e-05 16.7 0.1 1 1 1.5e-06 3.3e-05 15.8 0.1 20 43 29 51 20 59 0.82 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 AAA_29 PF13555.1 62 0.00016 13.6 0.0 1 1 1.5e-05 0.00034 12.5 0.0 16 40 368 393 360 397 0.73 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_4 - 598 MutS_V PF00488.16 235 0.00068 11.4 0.1 1 2 8.1e-05 0.0055 8.4 0.0 32 63 365 396 353 398 0.87 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_4 - 598 MutS_V PF00488.16 235 0.00068 11.4 0.1 2 2 0.023 1.6 0.4 0.1 107 161 495 546 483 579 0.75 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_32 - 111 B-block_TFIIIC PF04182.7 75 0.00052 12.3 0.0 1 1 8.9e-06 0.0006 12.1 0.0 4 52 18 66 15 84 0.91 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 2_9 - 327 DDE_Tnp_1_3 PF13612.1 155 1e-10 33.9 0.1 1 1 3e-12 2e-10 33.0 0.1 5 151 137 292 134 296 0.72 # 8197 # 9177 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 4_1 - 235 HTH_32 PF13565.1 77 8.8e-07 22.1 0.2 1 1 5.6e-08 3.8e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 240 GntR PF00392.16 64 2.1e-18 58.0 0.0 1 1 6.1e-20 4.2e-18 57.0 0.0 1 64 11 73 11 73 0.98 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 3_9 - 186 HTH_23 PF13384.1 50 1.7e-08 26.4 0.0 1 1 1.1e-08 1e-07 23.9 0.0 10 38 151 179 147 181 0.92 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 4_1 - 235 HTH_23 PF13384.1 50 4.1e-06 18.8 0.7 1 1 1.3e-05 0.00013 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 92 HTH_23 PF13384.1 50 2.4e-05 16.3 0.0 1 1 4e-06 3.9e-05 15.7 0.0 7 40 53 86 51 90 0.92 # 22828 # 23103 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_31 - 92 HTH_23 PF13384.1 50 4e-05 15.6 0.0 1 1 6.6e-06 6.4e-05 15.0 0.0 7 40 53 86 51 90 0.92 # 28229 # 28504 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_13 - 92 HTH_23 PF13384.1 50 0.00013 14.1 0.0 1 1 2.1e-05 0.0002 13.4 0.0 7 40 53 86 51 90 0.93 # 11362 # 11637 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_15 - 240 HTH_23 PF13384.1 50 0.00021 13.3 0.8 1 1 0.00088 0.0086 8.2 0.0 13 45 29 61 17 67 0.74 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_4 - 325 HTH_23 PF13384.1 50 0.00026 13.0 0.1 1 1 0.00017 0.0017 10.5 0.0 9 40 152 183 151 188 0.88 # 2737 # 3711 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_9 - 186 HTH_7 PF02796.10 45 1.8e-10 33.0 0.0 1 1 1.1e-11 7.5e-10 31.0 0.0 1 44 138 181 138 182 0.95 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 1_25 - 92 zinc_ribbon_4 PF13717.1 36 3.9e-05 15.7 4.1 1 1 4.7e-06 0.00011 14.3 4.1 3 35 6 39 5 40 0.86 # 22828 # 23103 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_13 - 92 zinc_ribbon_4 PF13717.1 36 3.9e-05 15.7 4.1 1 1 4.7e-06 0.00011 14.3 4.1 3 35 6 39 5 40 0.86 # 11362 # 11637 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_31 - 92 zinc_ribbon_4 PF13717.1 36 0.0015 10.7 5.3 1 1 0.00021 0.0047 9.1 5.3 5 35 8 39 5 40 0.83 # 28229 # 28504 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 2_3 - 236 NB-ARC PF00931.17 287 0.00078 10.7 1.1 1 1 2e-05 0.0014 9.8 0.7 17 40 29 52 16 56 0.81 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_3 - 236 Mg_chelatase PF01078.16 207 0.00044 11.8 0.0 1 1 1e-05 0.0007 11.1 0.0 9 77 18 86 11 96 0.82 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_32 - 111 FeoC PF09012.5 69 0.00087 11.4 2.1 1 1 3.9e-05 0.0026 9.9 2.1 15 57 33 73 21 104 0.84 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 3_9 - 186 HTH_29 PF13551.1 112 2.6e-05 16.8 0.0 1 1 3e-06 0.0001 14.8 0.0 6 33 153 179 149 183 0.93 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 1_36 - 118 HTH_29 PF13551.1 112 6.6e-05 15.5 0.4 1 1 2.3e-06 7.9e-05 15.2 0.4 4 90 22 99 18 111 0.82 # 31861 # 32214 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_14 - 204 Glyco_trans_4_4 PF13579.1 160 2.1e-06 20.3 0.3 1 1 8.4e-08 2.9e-06 19.9 0.3 2 91 15 111 14 170 0.72 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_23 - 595 Glyco_trans_4_4 PF13579.1 160 0.00045 12.7 6.2 1 1 3.3e-05 0.0011 11.5 6.2 25 138 231 375 213 391 0.70 # 19949 # 21733 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.587 4_1 - 235 DDE_Tnp_IS66 PF03050.9 271 1.6e-12 39.5 0.3 1 1 3e-14 2e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 236 Arch_ATPase PF01637.13 234 0.00013 14.0 0.2 1 1 3.4e-06 0.00023 13.2 0.2 15 41 28 52 20 56 0.82 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_5 - 402 TIGR01968 TIGR01968 261 0.00058 11.3 0.0 1 2 0.0091 0.62 1.3 0.0 4 28 111 135 108 169 0.76 # 3711 # 4916 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_5 - 402 TIGR01968 TIGR01968 261 0.00058 11.3 0.0 2 2 0.00016 0.011 7.1 0.0 102 138 235 271 226 288 0.87 # 3711 # 4916 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 2_9 - 327 DDE_Tnp_4 PF13359.1 158 1.7e-07 23.3 0.1 1 1 5.2e-09 3.5e-07 22.3 0.1 6 153 147 306 142 311 0.65 # 8197 # 9177 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_17 - 515 TIGR00611 TIGR00611 365 0.0002 12.6 0.0 1 1 6.2e-06 0.00042 11.5 0.0 10 43 19 53 3 57 0.88 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_3 - 424 IMS_HHH PF11798.3 32 1.7e-08 26.6 0.1 1 1 6.4e-10 4.3e-08 25.3 0.1 2 32 170 200 169 200 0.91 # 1384 # 2655 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_9 - 327 DDE_Tnp_1_6 PF13751.1 125 3.6e-09 29.1 0.2 1 1 1.4e-10 9.4e-09 27.7 0.2 59 123 253 314 244 316 0.81 # 8197 # 9177 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_25 - 92 HTH_Tnp_IS1 PF12759.2 46 3.8e-32 101.9 0.3 1 1 2.6e-33 5.9e-32 101.3 0.3 1 46 43 88 43 88 0.99 # 22828 # 23103 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_31 - 92 HTH_Tnp_IS1 PF12759.2 46 4.1e-31 98.6 0.2 1 1 3.1e-32 6.9e-31 97.9 0.2 1 46 43 88 43 88 0.99 # 28229 # 28504 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_13 - 92 HTH_Tnp_IS1 PF12759.2 46 4.3e-31 98.6 0.1 1 1 2.9e-32 6.7e-31 97.9 0.1 1 46 43 88 43 88 0.99 # 11362 # 11637 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_17 - 515 DUF258 PF03193.11 161 1.2e-06 20.2 0.4 1 2 8.6e-06 0.00029 12.4 0.0 28 65 25 63 5 82 0.82 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_17 - 515 DUF258 PF03193.11 161 1.2e-06 20.2 0.4 2 2 0.001 0.035 5.6 0.1 36 71 290 325 270 336 0.86 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 2_3 - 236 DUF258 PF03193.11 161 4.9e-06 18.2 0.1 1 1 2.2e-07 7.4e-06 17.6 0.1 23 59 18 55 4 88 0.80 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 3_9 - 186 HTH_28 PF13518.1 52 3.4e-06 19.4 0.0 1 1 5.8e-07 8e-06 18.2 0.0 7 33 153 179 147 181 0.87 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 4_1 - 235 HTH_28 PF13518.1 52 4e-05 16.0 1.2 1 1 1.3e-05 0.00017 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 92 HTH_28 PF13518.1 52 4.3e-05 15.9 0.0 1 1 4.8e-06 6.6e-05 15.3 0.0 4 35 55 86 53 90 0.91 # 22828 # 23103 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_31 - 92 HTH_28 PF13518.1 52 5.9e-05 15.4 0.0 1 1 7e-06 9.5e-05 14.8 0.0 4 34 55 85 53 89 0.91 # 28229 # 28504 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_13 - 92 HTH_28 PF13518.1 52 0.0003 13.2 0.0 1 1 3.3e-05 0.00045 12.6 0.0 4 35 55 86 53 90 0.91 # 11362 # 11637 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_32 - 111 HTH_24 PF13412.1 48 9e-07 20.6 0.0 1 1 6.5e-08 1.5e-06 20.0 0.0 4 47 17 62 15 63 0.93 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_15 - 240 HTH_24 PF13412.1 48 7.1e-06 17.8 0.0 1 1 1.3e-06 2.9e-05 15.8 0.0 21 47 37 63 31 64 0.91 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_4 - 325 HTH_24 PF13412.1 48 4.1e-05 15.3 1.1 1 1 3.4e-06 7.7e-05 14.5 0.1 15 39 158 182 151 184 0.84 # 2737 # 3711 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_14 - 204 LpxK PF02606.9 326 0.00056 11.2 0.0 1 1 1.5e-05 0.001 10.4 0.0 47 72 13 38 10 115 0.91 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 2_3 - 236 Miro PF08477.8 119 0.00011 15.0 0.0 1 1 2.6e-06 0.00017 14.4 0.0 2 22 34 54 33 90 0.87 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_3 - 236 T2SE PF00437.15 272 5.2e-05 14.5 0.1 1 1 1.2e-06 8.2e-05 13.9 0.1 114 154 17 57 2 77 0.85 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_3 - 236 NACHT PF05729.7 166 1.8e-05 16.8 0.5 1 1 5.1e-07 3.5e-05 15.9 0.5 2 21 33 52 32 55 0.93 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 515 UPF0079 PF02367.12 123 5e-05 15.3 0.3 1 1 3.1e-06 0.00021 13.3 0.0 11 36 29 54 21 58 0.90 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_17 - 515 TIGR02211 TIGR02211 221 2.4e-38 123.8 0.0 1 2 6.1e-25 1.4e-23 75.6 0.0 18 219 20 221 11 223 0.91 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_17 - 515 TIGR02211 TIGR02211 221 2.4e-38 123.8 0.0 2 2 1.1e-15 2.6e-14 45.3 0.0 14 219 272 485 264 487 0.86 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 2_3 - 236 TIGR02211 TIGR02211 221 5.9e-27 86.6 0.3 1 1 3.5e-28 8e-27 86.2 0.3 17 219 17 214 7 216 0.87 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 TIGR02211 TIGR02211 221 2.9e-21 68.0 0.0 1 1 2.1e-22 4.9e-21 67.3 0.0 17 219 362 569 354 571 0.90 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_3 - 236 AAA_25 PF13481.1 194 4.9e-06 18.4 0.2 1 2 3.6e-06 0.00012 13.8 0.1 31 65 29 65 19 136 0.79 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_3 - 236 AAA_25 PF13481.1 194 4.9e-06 18.4 0.2 2 2 0.012 0.42 2.3 0.0 164 186 169 192 152 195 0.85 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_17 - 515 AAA_25 PF13481.1 194 0.00018 13.3 0.3 1 2 3.6e-05 0.0012 10.6 0.1 30 53 30 53 5 56 0.83 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_17 - 515 AAA_25 PF13481.1 194 0.00018 13.3 0.3 2 2 0.079 2.7 -0.3 0.0 164 188 177 201 106 202 0.66 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 2_3 - 236 AAA_15 PF13175.1 415 0.00037 11.9 0.0 1 1 1.4e-05 0.00047 11.6 0.0 22 42 28 51 7 81 0.77 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 AAA_15 PF13175.1 415 0.0011 10.3 0.0 1 1 4.8e-05 0.0016 9.8 0.0 23 51 377 415 355 444 0.74 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_3 - 236 AAA_14 PF13173.1 128 0.00024 13.4 0.0 1 2 3.2e-05 0.0022 10.3 0.0 2 24 31 53 30 98 0.78 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_3 - 236 AAA_14 PF13173.1 128 0.00024 13.4 0.0 2 2 0.021 1.4 1.2 0.0 56 72 147 164 108 217 0.74 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_38 - 276 Usp PF00582.21 140 8.1e-36 115.7 0.2 1 2 6.6e-21 4.5e-19 61.4 0.2 1 140 1 152 1 152 0.91 # 34195 # 35022 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_38 - 276 Usp PF00582.21 140 8.1e-36 115.7 0.2 2 2 9.8e-17 6.6e-15 47.9 0.0 49 140 197 275 158 275 0.73 # 34195 # 35022 # 1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.633 3_14 - 204 ArgK PF03308.11 267 7.3e-11 33.6 1.0 1 2 2.2e-07 7.6e-06 17.2 0.1 29 66 3 40 2 45 0.94 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 3_14 - 204 ArgK PF03308.11 267 7.3e-11 33.6 1.0 2 2 8.4e-07 2.9e-05 15.3 0.1 122 191 94 164 80 197 0.75 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 2_4 - 598 ArgK PF03308.11 267 0.00037 11.6 0.0 1 1 1.8e-05 0.00062 10.9 0.0 14 64 361 411 352 421 0.84 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_3 - 236 SbcCD_C PF13558.1 90 0.00064 12.0 0.2 1 1 5.1e-05 0.0034 9.7 0.2 25 43 128 146 123 180 0.83 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_24 - 126 DDE_Tnp_IS1 PF03400.8 131 2.3e-76 246.5 1.5 1 1 1.1e-77 2.5e-76 246.4 1.5 7 131 1 125 1 125 1.00 # 22406 # 22783 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.540 1_30 - 100 DDE_Tnp_IS1 PF03400.8 131 9.8e-55 176.6 0.8 1 1 4.7e-56 1.1e-54 176.5 0.8 34 131 2 99 1 99 0.99 # 27807 # 28106 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.523 1_14 - 98 DDE_Tnp_IS1 PF03400.8 131 3.2e-51 165.2 0.2 1 1 1.6e-52 3.5e-51 165.1 0.2 35 131 1 97 1 97 0.99 # 11766 # 12059 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_25 - 92 zinc_ribbon_5 PF13719.1 37 7.9e-06 17.8 2.9 1 1 9.7e-07 2.2e-05 16.4 2.9 3 36 6 40 5 41 0.83 # 22828 # 23103 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_13 - 92 zinc_ribbon_5 PF13719.1 37 7.9e-06 17.8 2.9 1 1 9.7e-07 2.2e-05 16.4 2.9 3 36 6 40 5 41 0.83 # 11362 # 11637 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_31 - 92 zinc_ribbon_5 PF13719.1 37 0.0018 10.2 6.1 1 1 0.00032 0.0072 8.4 6.1 5 36 8 40 5 41 0.83 # 28229 # 28504 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_32 - 111 RP-C PF03428.8 177 0.00016 13.5 0.0 1 1 3.4e-06 0.00023 13.0 0.0 80 103 42 64 36 70 0.83 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 3_14 - 204 ATP_bind_1 PF03029.12 238 0.00047 12.1 0.0 1 1 1.6e-05 0.0011 10.8 0.0 3 30 10 37 8 43 0.93 # 7606 # 8217 # -1 # ID=3_14;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 4_1 - 235 DDE_Tnp_IS240 PF13610.1 140 5.2e-53 171.2 0.0 1 1 1.1e-54 7.2e-53 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_15 - 240 TFIIE_alpha PF02002.12 105 9e-05 14.4 0.0 1 2 6.1e-06 0.00042 12.2 0.0 21 59 27 65 8 71 0.80 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_15 - 240 TFIIE_alpha PF02002.12 105 9e-05 14.4 0.0 2 2 0.098 6.6 -1.3 0.0 14 27 181 193 174 224 0.50 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 3_9 - 186 HTH_17 PF12728.2 51 0.00015 14.4 0.0 1 1 6.1e-06 0.00042 13.0 0.0 5 22 162 179 160 182 0.94 # 3332 # 3889 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.636 1_31 - 92 Zn_Tnp_IS1595 PF12760.2 46 0.00011 14.3 4.8 1 1 9.1e-06 0.00021 13.5 4.8 19 46 6 38 3 38 0.79 # 28229 # 28504 # -1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_25 - 92 Zn_Tnp_IS1595 PF12760.2 46 0.00012 14.2 2.3 1 1 1e-05 0.00023 13.4 2.3 21 46 8 38 5 38 0.74 # 22828 # 23103 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_13 - 92 Zn_Tnp_IS1595 PF12760.2 46 0.00012 14.2 2.3 1 1 1e-05 0.00023 13.4 2.3 21 46 8 38 5 38 0.74 # 11362 # 11637 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_15 - 240 HTH_11 PF08279.7 55 3.2e-05 15.9 0.0 1 1 1.2e-06 7.9e-05 14.7 0.0 11 44 29 62 20 70 0.79 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_32 - 111 MarR_2 PF12802.2 62 2.8e-08 25.8 0.2 1 1 7e-10 4.8e-08 25.0 0.2 12 55 23 66 4 70 0.84 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_36 - 118 HTH_5 PF01022.15 47 2.3e-18 58.1 1.6 1 1 9.9e-20 3.4e-18 57.5 1.6 1 46 15 61 15 62 0.97 # 31861 # 32214 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_32 - 111 HTH_5 PF01022.15 47 8.6e-12 37.0 1.6 1 1 3.1e-13 1.1e-11 36.7 0.3 1 46 15 63 15 64 0.93 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_32 - 111 TrmB PF01978.14 68 8.8e-08 24.2 0.0 1 1 5.6e-09 1.3e-07 23.7 0.0 12 63 20 73 17 79 0.91 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_15 - 240 TrmB PF01978.14 68 1.4e-06 20.3 0.0 1 1 1.7e-07 3.9e-06 18.9 0.0 16 55 27 66 26 79 0.87 # 12110 # 12829 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.549 1_36 - 118 TrmB PF01978.14 68 0.00031 12.8 0.0 1 1 2.5e-05 0.00057 12.0 0.0 16 62 22 71 14 77 0.81 # 31861 # 32214 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_3 - 236 AAA_10 PF12846.2 304 1.4e-07 23.5 1.6 1 2 1.1e-05 0.00025 12.9 0.7 4 23 34 53 32 62 0.89 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_3 - 236 AAA_10 PF12846.2 304 1.4e-07 23.5 1.6 2 2 0.00014 0.0032 9.2 0.0 219 264 152 197 135 217 0.83 # 2224 # 2931 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 2_4 - 598 AAA_10 PF12846.2 304 1.5e-05 16.8 1.3 1 2 8.8e-06 0.0002 13.2 0.6 6 34 381 409 377 442 0.76 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 2_4 - 598 AAA_10 PF12846.2 304 1.5e-05 16.8 1.3 2 2 0.026 0.59 1.8 0.0 165 266 456 554 435 569 0.71 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_17 - 515 AAA_10 PF12846.2 304 0.0002 13.2 0.6 1 2 0.00016 0.0037 9.0 0.1 5 29 37 62 35 68 0.79 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_17 - 515 AAA_10 PF12846.2 304 0.0002 13.2 0.6 2 2 0.064 1.5 0.5 0.0 219 267 159 207 126 230 0.81 # 13531 # 15075 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.592 1_32 - 111 HTH_20 PF12840.2 61 6.6e-19 59.9 1.0 1 1 2.8e-20 9.6e-19 59.4 1.0 3 61 9 69 5 69 0.95 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_36 - 118 HTH_20 PF12840.2 61 3.2e-12 38.5 0.9 1 1 1.3e-13 4.4e-12 38.1 0.9 2 61 8 67 7 67 0.97 # 31861 # 32214 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_4 - 598 AAA_13 PF13166.1 712 0.00037 11.3 0.0 1 1 7.4e-06 0.0005 10.9 0.0 21 63 381 422 373 445 0.86 # 2928 # 4721 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_32 - 111 RPA_C PF08784.6 102 0.00039 13.2 0.0 1 1 8.3e-06 0.00056 12.7 0.0 61 95 28 62 3 64 0.91 # 28895 # 29227 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.568 1_25 - 92 DUF2387 PF09526.5 71 0.00012 14.4 0.2 1 1 4.5e-06 0.00015 14.0 0.2 10 47 7 47 5 72 0.76 # 22828 # 23103 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_13 - 92 DUF2387 PF09526.5 71 0.00012 14.3 0.3 1 1 4.7e-06 0.00016 14.0 0.3 10 46 7 46 5 71 0.76 # 11362 # 11637 # 1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.518 1_5 - 402 AAA_31 PF13614.1 157 6.4e-05 15.3 0.0 1 1 5.5e-06 0.00037 12.8 0.0 108 147 235 273 230 279 0.86 # 3711 # 4916 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_3 - 424 DNA_pol_lambd_f PF10391.4 52 3.5e-05 15.7 0.1 1 1 4.5e-06 0.0003 12.7 0.0 5 29 182 206 178 217 0.87 # 1384 # 2655 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/dbbfd64f-f5ed-4226-a6a5-380b3d125db0 # Target file: checkm_output/bins/pm1411/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1411/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dbbfd64f-f5ed-4226-a6a5-380b3d125db0 checkm_output/bins/pm1411/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:30 2017 # [ok]