# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_10 - 388 KaiC PF06745.8 227 0.00082 11.4 0.0 1 1 1.5e-05 0.0014 10.6 0.0 14 59 147 191 137 201 0.76 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_2 - 186 HTH_IclR PF09339.5 52 1.2e-05 17.7 0.2 1 1 4.6e-07 4.5e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_10 - 388 ABC_tran PF00005.22 137 0.00014 15.1 0.0 1 1 2.7e-06 0.00026 14.2 0.0 16 33 157 174 149 217 0.83 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_2 - 186 HTH_22 PF13309.1 64 0.00023 13.8 1.2 1 1 1.2e-05 0.0012 11.6 0.1 35 63 156 179 143 180 0.76 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 3_3 - 254 HTH_AsnC-type PF13404.1 42 0.00049 12.6 0.3 1 1 1.4e-05 0.0014 11.1 0.3 7 42 9 44 8 44 0.94 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_3 - 254 HTH_DeoR PF08220.7 57 2.7e-20 64.6 1.0 1 1 7.1e-22 6.9e-20 63.3 1.0 1 55 6 60 6 61 0.97 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_10 - 388 FtsK_SpoIIIE PF01580.13 205 9.7e-05 14.8 0.0 1 1 1.9e-06 0.00019 13.8 0.0 41 59 155 173 129 184 0.85 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_2 - 186 HTH_40 PF14493.1 91 0.00063 12.9 0.6 1 1 2.1e-05 0.0021 11.2 0.1 7 32 152 177 147 183 0.89 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_38 PF13936.1 44 5.8e-06 18.7 0.0 1 1 5.9e-08 5.8e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_10 - 388 MobB PF03205.9 140 0.00049 12.7 0.0 1 1 1e-05 0.001 11.7 0.0 4 25 156 177 154 190 0.85 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 3_3 - 254 MarR PF01047.17 59 3.6e-07 22.8 0.1 1 1 1e-08 9.8e-07 21.4 0.1 7 47 9 49 5 52 0.95 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_28 - 83 HTH_8 PF02954.14 42 1e-05 17.9 0.1 1 1 1.8e-07 1.8e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 19724 # 19972 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 2_23 - 1017 AAA_19 PF13245.1 76 0.00049 12.8 0.0 1 1 1.6e-05 0.0016 11.1 0.0 14 31 492 508 481 518 0.90 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 8_1 - 235 rve PF00665.21 120 3.2e-13 42.7 0.1 1 2 0.015 1.5 1.9 0.0 78 102 27 49 6 54 0.84 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 8_1 - 235 rve PF00665.21 120 3.2e-13 42.7 0.1 2 2 6.1e-14 5.9e-12 38.7 0.0 9 119 75 182 70 183 0.89 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_3 - 254 Fe_dep_repress PF01325.14 60 1.5e-06 21.0 0.2 1 1 4.1e-08 4e-06 19.6 0.1 13 53 10 50 8 55 0.93 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_10 - 388 AAA_23 PF13476.1 202 1.9e-06 21.2 0.1 1 1 4.2e-08 4.1e-06 20.1 0.0 19 44 152 177 140 226 0.87 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_16 - 283 TIGR00573 TIGR00573 217 1.1e-12 40.5 0.1 1 1 7.9e-14 7.7e-12 37.7 0.1 12 178 107 271 103 281 0.71 # 12113 # 12961 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.630 2_5 - 122 CPSase_L_D3 PF02787.14 123 0.0007 12.3 0.2 1 1 1.1e-05 0.001 11.7 0.2 50 96 45 91 21 102 0.78 # 1608 # 1973 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.423 2_10 - 388 SMC_N PF02463.14 220 0.0011 11.0 0.0 1 1 2.1e-05 0.0021 10.2 0.0 26 50 154 178 147 195 0.81 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 8_1 - 235 HTH_Tnp_1 PF01527.15 76 0.00024 13.9 0.3 1 1 5.4e-06 0.00053 12.9 0.3 4 51 6 58 4 63 0.79 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 696 TraG-D_C PF12696.2 128 0.00013 14.7 0.1 1 1 2.4e-06 0.00023 13.9 0.1 3 94 437 524 435 556 0.78 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 8_1 - 235 DDE_3 PF13358.1 146 0.00067 12.3 0.0 1 1 2.1e-05 0.002 10.7 0.0 32 90 82 141 59 146 0.87 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 7_1 - 421 DDE_Tnp_1 PF01609.16 213 7.8e-35 113.2 0.2 1 1 1.7e-36 1.7e-34 112.1 0.0 6 213 128 362 123 362 0.96 # 208 # 1470 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.340 1_22 - 425 ACT PF01842.20 66 3.3e-05 16.2 0.3 1 3 0.041 4 -0.0 0.0 13 27 232 246 232 246 0.90 # 15310 # 16584 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.599 1_22 - 425 ACT PF01842.20 66 3.3e-05 16.2 0.3 2 3 1.3e-05 0.0013 11.2 0.0 7 27 319 339 316 339 0.93 # 15310 # 16584 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.599 1_22 - 425 ACT PF01842.20 66 3.3e-05 16.2 0.3 3 3 0.056 5.5 -0.4 0.0 30 59 365 392 363 394 0.75 # 15310 # 16584 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.599 3_3 - 254 Sigma70_r4 PF04545.11 50 0.0041 9.4 4.2 1 1 1.3e-05 0.0013 11.0 0.4 7 39 5 38 5 43 0.90 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_28 - 83 HTH_37 PF13744.1 80 4e-05 16.3 0.0 1 1 8.8e-07 8.6e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 19724 # 19972 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 3_3 - 254 Rrf2 PF02082.15 83 1.8e-06 20.9 0.3 1 1 4.9e-08 4.8e-06 19.6 0.2 17 60 11 54 9 70 0.84 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_3 - 254 HTH_27 PF13463.1 68 7.1e-05 16.0 0.1 1 1 1.5e-06 0.00015 15.0 0.1 5 49 7 50 5 70 0.88 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_33 - 325 Hydantoinase_A PF01968.13 290 1.1e-07 24.1 3.6 1 2 5.2e-07 5.1e-05 15.3 0.1 67 96 158 186 140 193 0.83 # 22279 # 23253 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_33 - 325 Hydantoinase_A PF01968.13 290 1.1e-07 24.1 3.6 2 2 3.1e-05 0.0031 9.5 0.1 212 265 248 301 191 322 0.76 # 22279 # 23253 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 2_10 - 388 AAA_16 PF13191.1 185 0.00086 12.2 0.0 1 1 1.8e-05 0.0017 11.2 0.0 26 50 154 178 140 211 0.85 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 AAA_22 PF13401.1 131 2.8e-06 20.4 0.0 1 1 1.4e-07 7e-06 19.1 0.0 4 30 152 178 149 243 0.84 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_23 - 1017 AAA_22 PF13401.1 131 0.00024 14.1 0.0 1 1 1.7e-05 0.00082 12.4 0.0 8 70 492 558 486 594 0.69 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 3_3 - 254 DUF977 PF06163.6 127 0.00018 14.2 0.3 1 1 4.9e-06 0.00048 12.8 0.3 15 57 8 50 4 65 0.87 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_45 - 287 Methyltransf_27 PF13708.1 194 1.9e-69 225.9 0.0 1 1 3.3e-71 3.2e-69 225.2 0.0 2 194 89 282 88 282 0.98 # 29649 # 30509 # 1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_10 - 388 AAA_29 PF13555.1 62 8.7e-06 18.1 0.1 1 1 2.2e-07 2.2e-05 16.9 0.1 26 43 155 172 147 175 0.84 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_2 - 186 HTH_Tnp_IS630 PF01710.11 120 9.1e-05 15.0 0.0 1 1 1.9e-06 0.00019 14.0 0.0 8 44 148 184 145 185 0.90 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 8_1 - 235 HTH_32 PF13565.1 77 1.3e-06 22.1 0.2 1 1 5.6e-08 5.5e-06 20.0 0.0 26 76 5 50 2 51 0.83 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 3_3 - 254 GntR PF00392.16 64 3.4e-07 22.6 0.5 1 1 8.1e-09 8e-07 21.4 0.5 26 59 21 54 9 59 0.92 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_28 - 83 HTH_3 PF01381.17 55 2.1e-09 30.0 0.1 1 1 9.8e-11 3.2e-09 29.5 0.1 4 44 9 49 6 55 0.86 # 19724 # 19972 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_42 - 89 HTH_3 PF01381.17 55 2.3e-07 23.5 0.0 1 1 8.9e-09 2.9e-07 23.2 0.0 8 36 41 69 33 78 0.88 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_37 - 160 HTH_3 PF01381.17 55 0.00014 14.6 0.1 1 2 0.0022 0.071 5.9 0.0 2 20 15 33 14 37 0.91 # 24877 # 25356 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_37 - 160 HTH_3 PF01381.17 55 0.00014 14.6 0.1 2 2 0.0016 0.054 6.3 0.0 1 23 96 118 96 120 0.89 # 24877 # 25356 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 7_1 - 421 DDE_Tnp_1_4 PF13701.1 449 3.2e-27 87.6 3.5 1 2 0.0052 0.51 1.2 0.0 11 42 5 36 3 62 0.72 # 208 # 1470 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.340 7_1 - 421 DDE_Tnp_1_4 PF13701.1 449 3.2e-27 87.6 3.5 2 2 1.5e-28 1.4e-26 85.4 2.2 137 438 122 418 41 420 0.82 # 208 # 1470 # -1 # ID=7_1;partial=00;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=12bp;gc_cont=0.340 8_1 - 235 HTH_23 PF13384.1 50 5.9e-06 18.8 0.7 1 2 0.079 1.5 1.6 0.0 7 27 11 35 7 36 0.69 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 8_1 - 235 HTH_23 PF13384.1 50 5.9e-06 18.8 0.7 2 2 9.3e-06 0.00018 14.0 0.1 28 42 41 55 40 62 0.87 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_42 - 89 HTH_23 PF13384.1 50 1.2e-05 17.7 0.0 1 1 9.6e-07 1.9e-05 17.2 0.0 16 39 38 64 33 68 0.83 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 254 HTH_23 PF13384.1 50 2.4e-05 16.8 0.1 1 1 3.1e-06 6.2e-05 15.5 0.1 4 45 4 47 1 50 0.86 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_2 - 186 HTH_23 PF13384.1 50 4.3e-05 16.0 0.3 1 1 2.2e-06 4.3e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_28 - 83 HTH_23 PF13384.1 50 4.4e-05 16.0 0.0 1 1 4.4e-06 8.6e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 19724 # 19972 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_2 - 186 HTH_7 PF02796.10 45 1.8e-13 43.1 0.5 1 1 5.1e-15 5e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_28 - 83 HTH_19 PF12844.2 64 3.9e-08 26.2 0.0 1 1 1.2e-09 5.6e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 19724 # 19972 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_42 - 89 HTH_19 PF12844.2 64 0.00022 14.2 0.0 1 1 6.1e-06 0.0003 13.8 0.0 4 39 33 69 30 73 0.85 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_2 - 186 HTH_29 PF13551.1 112 0.00011 15.3 0.6 1 2 0.025 2.4 1.3 0.2 24 46 114 136 88 153 0.67 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_29 PF13551.1 112 0.00011 15.3 0.6 2 2 1e-05 0.001 12.2 0.0 4 35 151 181 148 184 0.90 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 8_1 - 235 DDE_Tnp_IS66 PF03050.9 271 2.3e-12 39.5 0.3 1 1 3e-14 2.9e-12 39.2 0.3 5 132 10 144 6 174 0.87 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_6 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 1 3 1.7e-05 0.0017 9.8 0.0 16 36 134 154 125 158 0.88 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_6 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 2 3 9.3e-05 0.0091 7.4 0.1 93 140 235 281 229 303 0.80 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 1_6 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 3 3 0.083 8.1 -2.3 0.0 293 323 482 512 405 546 0.58 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_23 - 1017 AAA_18 PF13238.1 129 8e-05 15.9 1.2 1 1 3.7e-06 0.00036 13.7 0.0 2 19 492 509 492 568 0.77 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_15 - 435 IMS_HHH PF11798.3 32 0.00033 13.6 0.1 1 1 1e-05 0.00099 12.1 0.1 14 32 194 212 183 212 0.85 # 10786 # 12090 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.595 1_16 - 283 TIGR01406 TIGR01406 231 8e-14 44.3 0.0 1 1 1.8e-15 1.8e-13 43.2 0.0 4 128 106 223 104 281 0.73 # 12113 # 12961 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.630 2_10 - 388 DUF87 PF01935.12 229 8.9e-05 15.2 0.0 1 1 1.8e-06 0.00018 14.2 0.0 28 45 157 174 155 188 0.89 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 3_3 - 254 HTH_28 PF13518.1 52 3.9e-05 16.5 0.0 1 1 4.7e-06 9.2e-05 15.3 0.0 4 41 9 48 6 53 0.89 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 8_1 - 235 HTH_28 PF13518.1 52 5.7e-05 16.0 1.2 1 1 1.3e-05 0.00025 14.0 1.2 22 36 40 54 13 55 0.76 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_28 PF13518.1 52 0.00013 14.9 0.0 1 1 2.1e-05 0.00042 13.2 0.0 8 33 154 179 148 184 0.82 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_28 - 83 HTH_28 PF13518.1 52 0.00041 13.3 0.1 1 1 4.5e-05 0.00089 12.2 0.1 8 29 8 31 6 35 0.78 # 19724 # 19972 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_42 - 89 HTH_28 PF13518.1 52 0.00051 13.0 0.1 1 1 3.6e-05 0.00071 12.5 0.1 7 34 34 64 33 68 0.82 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 254 HTH_24 PF13412.1 48 3.5e-07 22.5 0.4 1 1 9.4e-09 9.3e-07 21.1 0.2 5 47 7 49 5 50 0.95 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_16 - 283 TIGR01298 TIGR01298 200 4.2e-05 15.9 1.2 1 1 2.6e-06 0.00026 13.4 1.2 105 189 179 267 92 274 0.71 # 12113 # 12961 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.630 2_10 - 388 Miro PF08477.8 119 0.00093 12.6 0.0 1 1 2.1e-05 0.0021 11.5 0.0 4 28 157 186 156 220 0.72 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_28 - 83 HTH_31 PF13560.1 64 1.2e-09 31.2 0.2 1 1 4.5e-11 1.5e-09 30.9 0.2 9 56 9 55 6 73 0.90 # 19724 # 19972 # 1 # ID=1_28;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.566 1_37 - 160 HTH_31 PF13560.1 64 6.6e-07 22.4 1.2 1 2 0.0035 0.11 5.6 0.0 6 33 14 41 12 48 0.88 # 24877 # 25356 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_37 - 160 HTH_31 PF13560.1 64 6.6e-07 22.4 1.2 2 2 2.8e-06 9e-05 15.6 0.3 4 39 94 129 91 135 0.88 # 24877 # 25356 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_42 - 89 HTH_31 PF13560.1 64 2.9e-05 17.1 0.0 1 1 1.2e-06 3.9e-05 16.7 0.0 2 42 29 69 28 80 0.84 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_23 - 1017 DUF2075 PF09848.4 352 0.00034 12.5 0.2 1 1 1.1e-05 0.0011 10.8 0.0 5 22 492 509 489 533 0.86 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 2_10 - 388 T2SE PF00437.15 272 2.8e-23 75.0 0.0 1 1 4.6e-25 4.5e-23 74.3 0.0 11 269 24 303 15 306 0.78 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_33 - 325 StbA PF06406.6 318 3.2e-157 515.2 0.2 1 1 3.7e-159 3.6e-157 515.1 0.2 1 318 1 322 1 322 0.99 # 22279 # 23253 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 2_10 - 388 NACHT PF05729.7 166 0.00033 13.2 0.0 1 1 6.6e-06 0.00065 12.3 0.0 4 29 156 181 154 188 0.83 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_23 - 1017 AAA_17 PF13207.1 121 4.5e-05 17.2 0.1 1 1 3.9e-06 0.00038 14.2 0.0 3 27 492 522 492 582 0.70 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 2_10 - 388 AAA_25 PF13481.1 194 5.7e-06 18.7 0.0 1 1 1.3e-07 1.3e-05 17.6 0.0 24 53 143 172 120 178 0.86 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_52 - 147 RepA_N PF06970.6 76 0.00078 12.2 0.0 1 1 1.6e-05 0.0016 11.2 0.0 15 44 56 85 53 90 0.92 # 32963 # 33403 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.551 1_33 - 325 Hydant_A_N PF05378.8 176 0.00098 11.5 3.9 1 4 0.08 7.8 -1.2 0.0 1 19 2 20 2 48 0.82 # 22279 # 23253 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_33 - 325 Hydant_A_N PF05378.8 176 0.00098 11.5 3.9 2 4 0.049 4.8 -0.5 0.0 108 154 38 86 15 103 0.67 # 22279 # 23253 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_33 - 325 Hydant_A_N PF05378.8 176 0.00098 11.5 3.9 3 4 0.057 5.6 -0.7 0.0 95 129 113 147 89 153 0.76 # 22279 # 23253 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_33 - 325 Hydant_A_N PF05378.8 176 0.00098 11.5 3.9 4 4 3.6e-05 0.0035 9.7 0.2 2 51 170 217 169 226 0.82 # 22279 # 23253 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 3_3 - 254 MerR PF00376.18 38 0.00078 11.9 0.3 1 2 6.2e-05 0.0061 9.1 0.1 1 18 21 38 21 53 0.80 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_3 - 254 MerR PF00376.18 38 0.00078 11.9 0.3 2 2 0.078 7.7 -0.8 0.0 13 19 158 164 157 165 0.85 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_3 - 254 PaaX PF07848.7 70 2.9e-06 20.1 0.2 1 1 5.5e-08 5.4e-06 19.3 0.2 15 68 14 64 10 66 0.85 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_10 - 388 Ribosomal_S5 PF00333.15 67 3e-05 16.7 0.1 1 2 0.00091 0.089 5.5 0.0 26 45 84 103 76 114 0.83 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 Ribosomal_S5 PF00333.15 67 3e-05 16.7 0.1 2 2 0.00012 0.011 8.4 0.0 21 54 242 274 230 278 0.91 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 2_10 - 388 RNA_helicase PF00910.17 107 0.0011 12.1 0.0 1 1 2.5e-05 0.0024 10.9 0.0 3 26 157 180 156 197 0.81 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_25 - 136 Methyltransf_23 PF13489.1 161 0.00073 12.1 0.0 1 1 9e-06 0.00088 11.9 0.0 104 158 40 97 15 100 0.64 # 18025 # 18432 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.517 1_42 - 89 Phage_CII PF05269.6 91 0.00075 12.4 0.0 1 1 9.8e-06 0.00096 12.1 0.0 17 45 36 64 32 81 0.83 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 2_10 - 388 ATP_bind_1 PF03029.12 238 0.0008 11.8 0.0 1 1 1.3e-05 0.0013 11.2 0.0 1 25 157 181 157 191 0.84 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 8_1 - 235 DDE_Tnp_IS240 PF13610.1 140 7.4e-53 171.2 0.0 1 1 2.1e-54 1e-52 170.7 0.0 4 139 75 212 73 213 0.99 # 53 # 757 # -1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 2_14 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00011 15.0 0.0 1 1 2.5e-06 0.00012 14.9 0.0 29 64 18 52 5 58 0.83 # 11231 # 11428 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_42 - 89 HTH_26 PF13443.1 63 0.00047 13.3 0.0 1 1 6.4e-06 0.00063 12.9 0.0 11 47 43 78 33 82 0.90 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 254 HTH_11 PF08279.7 55 9.3e-13 40.6 0.3 1 1 3.3e-14 1.6e-12 39.8 0.3 1 53 6 55 6 57 0.89 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_42 - 89 HTH_11 PF08279.7 55 0.00098 11.7 0.0 1 1 2.8e-05 0.0014 11.2 0.0 6 34 33 61 31 64 0.89 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 254 MarR_2 PF12802.2 62 1.5e-07 23.9 2.4 1 2 3.5e-09 3.5e-07 22.8 0.7 8 54 8 52 5 65 0.92 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_3 - 254 MarR_2 PF12802.2 62 1.5e-07 23.9 2.4 2 2 0.087 8.5 -0.9 0.0 26 44 227 245 219 248 0.73 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_3 - 254 HTH_5 PF01022.15 47 2e-05 17.1 0.4 1 1 9.3e-07 9.1e-05 15.0 0.2 7 45 10 49 8 51 0.90 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_3 - 254 TrmB PF01978.14 68 2.3e-05 17.0 0.2 1 1 9.4e-07 4.6e-05 16.0 0.2 15 54 11 51 10 62 0.90 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_2 - 186 TrmB PF01978.14 68 5.6e-05 15.7 0.0 1 1 2.3e-06 0.00011 14.8 0.0 19 44 155 180 150 181 0.89 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_42 - 89 HTH_Crp_2 PF13545.1 76 0.00036 13.2 0.0 1 1 5.4e-06 0.00053 12.7 0.0 26 50 40 64 32 65 0.88 # 27176 # 27442 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 3_3 - 254 HTH_Mga PF08280.6 59 0.00013 14.6 0.0 1 1 3.1e-06 0.00031 13.4 0.0 4 44 4 44 3 50 0.94 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 3_4 - 384 Seryl_tRNA_N PF02403.17 108 0.0013 11.6 11.6 1 3 0.0022 0.22 4.5 0.1 38 104 84 151 63 155 0.89 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 3_4 - 384 Seryl_tRNA_N PF02403.17 108 0.0013 11.6 11.6 2 3 0.00077 0.075 6.0 0.1 27 59 182 214 170 236 0.85 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 3_4 - 384 Seryl_tRNA_N PF02403.17 108 0.0013 11.6 11.6 3 3 0.00044 0.043 6.8 1.6 17 107 254 343 247 344 0.76 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_16 - 283 RNase_T PF00929.19 164 8.8e-22 71.0 0.0 1 1 1.1e-23 1.1e-21 70.6 0.0 1 163 105 262 105 263 0.94 # 12113 # 12961 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.630 3_3 - 254 DUF1670 PF07900.6 220 0.0001 14.4 0.1 1 1 1.5e-06 0.00015 13.9 0.1 101 203 15 117 7 124 0.79 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 2_23 - 1017 AAA_10 PF12846.2 304 8.5e-41 133.1 0.0 1 1 5.5e-42 1.8e-40 132.1 0.0 5 297 492 884 489 889 0.91 # 17319 # 20369 # 1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_6 - 696 AAA_10 PF12846.2 304 6.2e-10 31.8 0.0 1 1 2.8e-11 9.2e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 3642 # 5729 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.545 2_10 - 388 AAA_10 PF12846.2 304 1.4e-06 20.8 0.0 1 1 2.5e-07 8.1e-06 18.3 0.0 3 27 154 178 152 196 0.74 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 3_3 - 254 HTH_20 PF12840.2 61 5.7e-07 22.2 1.5 1 1 2.7e-08 1.3e-06 21.0 0.1 14 57 9 52 7 55 0.93 # 1081 # 1842 # -1 # ID=3_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_2 - 186 HTH_20 PF12840.2 61 4.2e-06 19.4 0.1 1 2 0.016 0.79 2.5 0.0 33 52 8 27 6 28 0.90 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 186 HTH_20 PF12840.2 61 4.2e-06 19.4 0.1 2 2 1.8e-05 0.00089 12.0 0.1 3 43 110 177 108 180 0.91 # 433 # 990 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 3_4 - 384 AAA_13 PF13166.1 712 0.00092 10.6 17.6 1 2 1.2e-05 0.0011 10.2 2.7 365 468 109 214 61 229 0.52 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 3_4 - 384 AAA_13 PF13166.1 712 0.00092 10.6 17.6 2 2 0.00038 0.038 5.2 8.5 321 439 249 377 207 383 0.75 # 2170 # 3321 # -1 # ID=3_4;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_55 - 145 SSB PF00436.20 104 3.2e-32 103.4 0.2 1 1 3.8e-34 3.7e-32 103.2 0.2 2 103 7 111 6 112 0.96 # 34179 # 34613 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_10 - 388 GTP_EFTU PF00009.22 188 0.001 11.4 0.0 1 1 2e-05 0.0019 10.5 0.0 8 34 157 183 155 195 0.87 # 5832 # 6995 # 1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/b830d3b8-e5cf-4938-92d9-a2f30472fd24 # Target file: checkm_output/bins/pm1410/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1410/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b830d3b8-e5cf-4938-92d9-a2f30472fd24 checkm_output/bins/pm1410/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:30 2017 # [ok]