# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 260 ABC_tran PF00005.22 137 1.5e-05 15.0 0.3 1 2 1.2e-05 0.00012 12.1 0.0 8 30 99 121 93 136 0.86 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 ABC_tran PF00005.22 137 1.5e-05 15.0 0.3 2 2 0.051 0.51 0.3 0.0 107 134 143 172 126 174 0.74 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 304 rve_3 PF13683.1 67 3.4e-05 13.1 0.1 1 1 1.3e-05 0.00013 11.2 0.0 6 65 183 250 178 251 0.88 # 187 # 1098 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_3 - 260 Sigma54_activat PF00158.21 168 1.4e-05 14.3 0.1 1 1 8.2e-06 8.2e-05 11.8 0.1 18 53 98 133 82 198 0.72 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_1 - 42 HTH_38 PF13936.1 44 3.4e-05 13.1 0.0 1 1 4.3e-06 4.3e-05 12.8 0.0 6 25 3 22 2 23 0.91 # 78 # 203 # 1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.460 1_9 - 100 MarR PF01047.17 59 3.3e-05 13.3 0.0 1 1 6.3e-06 6.3e-05 12.4 0.0 9 37 32 60 30 64 0.85 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_3 - 260 AAA_19 PF13245.1 76 4.2e-05 13.0 0.0 1 1 1.1e-05 0.00011 11.7 0.0 10 37 103 129 96 154 0.81 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 100 Sigma70_r4_2 PF08281.7 54 4.1e-07 19.2 0.0 1 1 1.2e-07 1.2e-06 17.6 0.0 20 45 34 59 34 64 0.89 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_2 - 304 rve PF00665.21 120 1.2e-23 73.2 0.0 1 1 2.2e-24 2.2e-23 72.4 0.0 3 118 81 205 80 207 0.96 # 187 # 1098 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 1_3 - 260 AFG1_ATPase PF03969.11 362 7.2e-06 14.6 0.2 1 1 2.8e-06 2.8e-05 12.6 0.2 63 216 103 254 43 259 0.72 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 Bac_DnaA PF00308.13 219 1.1e-10 31.2 0.0 1 1 1.6e-11 1.6e-10 30.6 0.0 37 136 105 202 75 207 0.85 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 100 Sigma70_r4 PF04545.11 50 4.9e-06 15.6 0.1 1 1 1.1e-06 1.1e-05 14.5 0.1 20 44 40 64 32 66 0.87 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_3 - 260 AAA PF00004.24 132 1.9e-08 24.3 0.0 1 1 3.2e-09 3.2e-08 23.5 0.0 1 74 105 180 105 214 0.77 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 100 HTH_37 PF13744.1 80 9.3e-18 53.6 1.3 1 1 1.1e-18 1.1e-17 53.4 1.3 3 79 9 87 7 88 0.93 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_9 - 100 HTH_25 PF13413.1 62 4e-07 19.4 0.2 1 1 7.6e-08 7.6e-07 18.5 0.2 2 34 32 64 31 88 0.79 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 65 cobW PF02492.14 178 3.1e-05 13.1 0.4 1 1 3.4e-06 3.4e-05 13.0 0.4 128 175 3 49 1 53 0.84 # 2914 # 3108 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.503 1_3 - 260 AAA_16 PF13191.1 185 6.6e-06 15.9 1.1 1 2 0.052 0.52 -0.1 0.2 115 142 18 46 3 97 0.57 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_16 PF13191.1 185 6.6e-06 15.9 1.1 2 2 3e-06 3e-05 13.7 0.1 21 41 99 119 86 151 0.78 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_22 PF13401.1 131 1.5e-07 21.3 0.2 1 2 2.2e-05 0.00022 11.0 0.0 5 21 103 119 99 131 0.83 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_22 PF13401.1 131 1.5e-07 21.3 0.2 2 2 0.00036 0.0036 7.1 0.0 88 103 154 181 126 203 0.66 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 TIGR00362 TIGR00362 437 6e-12 34.5 0.0 1 1 7.1e-13 7.1e-12 34.3 0.0 139 240 104 203 28 210 0.86 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_29 PF13555.1 62 7.5e-05 12.0 0.0 1 1 1.4e-05 0.00014 11.1 0.0 19 59 98 139 89 141 0.72 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_28 PF13521.1 163 0.00012 11.7 1.8 1 2 0.063 0.63 -0.4 0.1 84 110 35 63 3 82 0.67 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_28 PF13521.1 163 0.00012 11.7 1.8 2 2 3e-05 0.0003 10.4 0.2 1 43 104 151 104 172 0.70 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 100 HTH_3 PF01381.17 55 1.5e-12 37.0 0.5 1 1 2.5e-13 2.5e-12 36.2 0.5 2 52 33 83 32 85 0.93 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_9 - 100 HTH_23 PF13384.1 50 2.3e-05 13.7 0.0 1 1 5.9e-06 5.9e-05 12.5 0.0 12 37 33 60 30 65 0.82 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_9 - 100 HTH_19 PF12844.2 64 1.3e-08 24.5 0.1 1 1 2.2e-09 2.2e-08 23.8 0.1 7 54 35 82 32 89 0.90 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_3 - 260 Arch_ATPase PF01637.13 234 9.4e-05 11.8 0.1 1 2 3.4e-05 0.00034 9.9 0.0 8 37 90 119 87 140 0.79 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 Arch_ATPase PF01637.13 234 9.4e-05 11.8 0.1 2 2 0.071 0.71 -0.9 0.0 121 150 167 192 144 203 0.68 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 PhoH PF02562.11 205 1e-08 24.2 0.1 1 1 3.6e-09 3.6e-08 22.5 0.0 11 48 94 131 83 159 0.83 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_5 PF07728.9 139 2.9e-06 16.7 0.3 1 2 3.6e-06 3.6e-05 13.2 0.2 1 74 104 173 104 180 0.72 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_5 PF07728.9 139 2.9e-06 16.7 0.3 2 2 0.053 0.53 -0.3 0.0 90 123 225 258 218 259 0.63 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 ResIII PF04851.10 184 3.7e-05 13.3 0.0 1 2 6.9e-05 0.00069 9.1 0.0 8 50 89 127 49 135 0.78 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 ResIII PF04851.10 184 3.7e-05 13.3 0.0 2 2 0.0088 0.088 2.3 0.0 112 163 131 181 127 202 0.72 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 DUF258 PF03193.11 161 1.3e-06 17.3 0.0 1 1 2e-07 2e-06 16.8 0.0 21 78 88 157 70 192 0.71 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 100 HTH_24 PF13412.1 48 1.6e-05 13.9 0.3 1 1 5.9e-06 5.9e-05 12.2 0.0 18 36 41 59 34 60 0.93 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_9 - 100 HTH_31 PF13560.1 64 4.9e-13 38.9 0.0 1 1 7.3e-14 7.3e-13 38.3 0.0 6 56 32 81 31 90 0.92 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_9 - 100 HTH_6 PF01418.12 77 2.8e-06 16.7 0.1 1 1 3.9e-07 3.9e-06 16.3 0.1 17 56 23 62 6 73 0.89 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_3 - 260 AAA_25 PF13481.1 194 2.5e-06 16.6 0.0 1 1 4.1e-07 4.1e-06 15.9 0.0 22 58 90 127 71 183 0.79 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 RuvB_N PF05496.7 234 3.7e-05 12.5 0.0 1 1 6.5e-06 6.5e-05 11.7 0.0 50 119 102 182 92 190 0.65 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_14 PF13173.1 128 1.2e-07 21.4 0.0 1 1 2.3e-08 2.3e-07 20.5 0.0 2 96 102 203 101 221 0.67 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 NTPase_1 PF03266.10 168 2.3e-05 13.8 0.1 1 2 0.0016 0.016 4.5 0.1 2 30 105 133 104 153 0.83 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 NTPase_1 PF03266.10 168 2.3e-05 13.8 0.1 2 2 0.00025 0.0025 7.2 0.0 88 112 157 181 144 204 0.72 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 100 HTH_26 PF13443.1 63 2.2e-06 17.6 0.1 1 1 3.9e-07 3.9e-06 16.7 0.1 4 45 34 74 32 81 0.81 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_9 - 100 MarR_2 PF12802.2 62 1.5e-05 14.3 0.1 1 1 5.2e-06 5.2e-05 12.6 0.1 21 41 40 60 2 63 0.85 # 7779 # 8078 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_3 - 260 AAA_10 PF12846.2 304 7.9e-07 18.3 0.7 1 3 0.028 0.28 0.1 0.0 127 169 38 82 8 95 0.68 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_10 PF12846.2 304 7.9e-07 18.3 0.7 2 3 9.5e-07 9.5e-06 14.8 0.1 1 33 102 134 102 171 0.89 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 AAA_10 PF12846.2 304 7.9e-07 18.3 0.7 3 3 0.024 0.24 0.3 0.0 202 247 142 192 134 202 0.68 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 IstB_IS21 PF01695.12 178 4.5e-74 237.3 0.1 1 2 0.049 0.49 -0.6 0.0 64 97 25 57 24 61 0.64 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_3 - 260 IstB_IS21 PF01695.12 178 4.5e-74 237.3 0.1 2 2 9.8e-75 9.8e-74 236.2 0.1 1 178 56 235 56 235 0.98 # 1098 # 1877 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_4 - 65 Phe_tRNA-synt_N PF02912.13 73 2.8e-05 13.5 0.1 1 1 4.4e-06 4.4e-05 12.9 0.1 26 61 22 57 21 61 0.94 # 2914 # 3108 # 1 # ID=1_4;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/5b5058a6-221c-4153-a1ec-84d712eb5f8b # Target file: checkm_output/bins/pm1404/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1404/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5b5058a6-221c-4153-a1ec-84d712eb5f8b checkm_output/bins/pm1404/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:21 2017 # [ok]