# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 229 CbiA PF01656.18 195 4.6e-15 45.9 2.6 1 1 5.6e-15 9.5e-14 41.6 2.6 1 192 13 187 13 190 0.75 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_9 - 654 TraG-D_C PF12696.2 128 8.1e-11 32.3 0.0 1 1 8.5e-12 1.4e-10 31.5 0.0 2 95 420 516 419 546 0.80 # 6429 # 8390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.423 1_2 - 229 MipZ PF09140.6 261 5.9e-12 35.5 0.6 1 2 6e-06 0.0001 11.8 0.2 2 22 12 32 11 36 0.90 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_2 - 229 MipZ PF09140.6 261 5.9e-12 35.5 0.6 2 2 4.3e-09 7.4e-08 22.1 0.0 79 132 69 122 51 146 0.84 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_15 - 121 HTH_3 PF01381.17 55 8.2e-13 38.5 2.1 1 1 1.4e-13 2.3e-12 37.1 0.5 1 55 6 64 6 64 0.94 # 11453 # 11815 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=12bp;gc_cont=0.320 1_15 - 121 HTH_19 PF12844.2 64 2.5e-15 46.8 0.3 1 1 2.7e-16 4.6e-15 45.9 0.1 2 63 4 69 3 70 0.88 # 11453 # 11815 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=12bp;gc_cont=0.320 1_9 - 654 TrwB_AAD_bind PF10412.4 386 2.4e-12 36.4 0.0 1 2 8.6e-07 1.5e-05 14.1 0.0 11 53 204 246 199 261 0.87 # 6429 # 8390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.423 1_9 - 654 TrwB_AAD_bind PF10412.4 386 2.4e-12 36.4 0.0 2 2 1.9e-08 3.3e-07 19.6 0.0 159 381 331 560 291 564 0.65 # 6429 # 8390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.423 1_2 - 229 TIGR01968 TIGR01968 261 5.2e-07 19.3 0.5 1 2 0.00012 0.002 7.5 0.5 2 23 11 32 10 36 0.91 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_2 - 229 TIGR01968 TIGR01968 261 5.2e-07 19.3 0.5 2 2 2.3e-05 0.00039 9.9 0.0 107 228 84 209 66 218 0.77 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_9 - 654 DUF87 PF01935.12 229 6.8e-07 19.7 0.0 1 1 7.8e-08 1.3e-06 18.7 0.0 6 64 192 249 188 339 0.83 # 6429 # 8390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.423 1_15 - 121 HTH_31 PF13560.1 64 1.6e-09 28.3 0.0 1 1 1.6e-10 2.7e-09 27.6 0.0 5 57 5 60 4 71 0.91 # 11453 # 11815 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=12bp;gc_cont=0.320 1_2 - 229 VirC1 PF07015.6 231 3.6e-06 16.6 0.0 1 1 3.3e-07 5.7e-06 15.9 0.0 2 158 11 163 10 190 0.77 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_2 - 229 AAA_33 PF13671.1 143 0.00016 11.9 0.0 1 1 1.7e-05 0.00028 11.2 0.0 9 85 21 104 19 151 0.76 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_9 - 654 T4SS-DNA_transf PF02534.9 469 1.9e-10 30.2 0.0 1 3 0.037 0.64 -1.2 0.0 90 124 157 189 145 199 0.74 # 6429 # 8390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.423 1_9 - 654 T4SS-DNA_transf PF02534.9 469 1.9e-10 30.2 0.0 2 3 1.7e-05 0.00029 9.8 0.0 44 84 206 250 185 268 0.79 # 6429 # 8390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.423 1_9 - 654 T4SS-DNA_transf PF02534.9 469 1.9e-10 30.2 0.0 3 3 1.3e-07 2.2e-06 16.8 0.0 250 434 367 554 348 570 0.82 # 6429 # 8390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.423 1_15 - 121 HTH_26 PF13443.1 63 9.9e-05 13.0 0.0 1 1 1.6e-05 0.00027 11.6 0.0 1 53 5 60 5 67 0.81 # 11453 # 11815 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=12bp;gc_cont=0.320 1_14 - 173 TIGR00922 TIGR00922 172 9.7e-07 18.8 0.0 1 1 1.3e-07 2.2e-06 17.7 0.0 40 103 36 101 6 159 0.66 # 10647 # 11165 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=3bp;gc_cont=0.380 1_9 - 654 AAA_10 PF12846.2 304 4.5e-13 39.6 0.0 1 1 1.9e-13 3.3e-12 36.8 0.0 4 298 211 499 208 502 0.77 # 6429 # 8390 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=14bp;gc_cont=0.423 1_2 - 229 AAA_31 PF13614.1 157 2.4e-05 14.7 0.1 1 3 0.0051 0.087 3.1 0.0 1 22 11 32 11 37 0.88 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_2 - 229 AAA_31 PF13614.1 157 2.4e-05 14.7 0.1 2 3 0.00072 0.012 5.9 0.0 56 116 79 140 65 144 0.86 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 1_2 - 229 AAA_31 PF13614.1 157 2.4e-05 14.7 0.1 3 3 0.0059 0.1 2.9 0.0 24 63 141 179 137 200 0.78 # 530 # 1216 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=13bp;gc_cont=0.361 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ace3e87b-e30b-4c25-8f7d-378d67bdd3ca # Target file: checkm_output/bins/pm1401/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1401/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ace3e87b-e30b-4c25-8f7d-378d67bdd3ca checkm_output/bins/pm1401/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:20 2017 # [ok]