# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 354 Cons_hypoth95 PF03602.10 183 3.8e-05 13.3 0.0 1 1 4.6e-06 6.4e-05 12.5 0.0 45 123 3 78 1 92 0.83 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_4 - 143 HTH_IclR PF09339.5 52 4.2e-05 13.3 0.1 1 1 6e-06 8.4e-05 12.4 0.1 20 40 5 25 2 26 0.90 # 1905 # 2333 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.380 1_5 - 331 TRM PF02005.11 377 0.0001 11.4 0.1 1 2 2.6e-05 0.00037 9.5 0.0 74 96 36 58 30 74 0.82 # 4893 # 5885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_5 - 331 TRM PF02005.11 377 0.0001 11.4 0.1 2 2 0.045 0.63 -1.1 0.0 289 352 111 153 100 187 0.52 # 4893 # 5885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_3 - 354 TIGR00406 TIGR00406 288 5.8e-07 19.0 0.1 1 1 8e-08 1.1e-06 18.0 0.1 162 230 3 74 2 76 0.80 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_1 - 226 Rep_3 PF01051.16 222 1.2e-62 201.5 3.6 1 1 9.7e-64 1.4e-62 201.3 3.6 3 222 4 220 2 220 0.95 # 1 # 678 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.335 1_3 - 354 Methyltransf_26 PF13659.1 117 1.3e-08 25.1 0.0 1 1 1.7e-09 2.4e-08 24.2 0.0 3 108 3 111 2 119 0.73 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_7 - 95 zf-TFIIB PF13453.1 41 0.0095 5.4 14.2 1 2 0.00017 0.0024 7.3 4.2 2 28 9 39 8 39 0.77 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_7 - 95 zf-TFIIB PF13453.1 41 0.0095 5.4 14.2 2 2 0.0023 0.032 3.7 0.2 2 7 63 68 62 72 0.85 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 2_4 - 143 DivIC PF04977.10 80 0.00035 10.3 5.5 1 1 4.3e-05 0.00061 9.5 5.5 18 57 71 110 65 113 0.86 # 1905 # 2333 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.380 1_7 - 95 zf-C4_Topoisom PF01396.14 39 0.054 3.3 20.4 1 3 0.00076 0.011 5.5 0.3 2 12 7 17 6 18 0.88 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_7 - 95 zf-C4_Topoisom PF01396.14 39 0.054 3.3 20.4 2 3 0.05 0.7 -0.3 9.7 2 27 31 51 30 53 0.86 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_7 - 95 zf-C4_Topoisom PF01396.14 39 0.054 3.3 20.4 3 3 0.0023 0.033 4.0 0.2 2 9 61 68 60 71 0.78 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_3 - 354 Eco57I PF07669.6 106 5.5e-05 13.7 0.0 1 1 9.8e-06 0.00014 12.4 0.0 3 50 70 115 68 137 0.87 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_4 - 143 MerR_1 PF13411.1 69 1.1e-06 18.5 0.7 1 2 2.1e-07 2.9e-06 17.2 0.0 2 30 5 33 4 53 0.87 # 1905 # 2333 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.380 2_4 - 143 MerR_1 PF13411.1 69 1.1e-06 18.5 0.7 2 2 0.092 1.3 -0.9 0.1 42 67 78 104 75 113 0.70 # 1905 # 2333 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.380 2_1 - 265 DDE_Tnp_1_7 PF13843.1 351 0.00011 11.4 0.0 1 1 1.1e-05 0.00016 10.9 0.0 3 32 207 236 205 250 0.85 # 1 # 795 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_3 - 354 Methyltransf_31 PF13847.1 152 2.3e-06 17.4 0.3 1 1 3.8e-07 5.3e-06 16.2 0.2 6 83 3 79 2 153 0.69 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_15 PF09445.5 164 1.3e-09 27.9 0.0 1 1 2e-10 2.8e-09 26.9 0.0 4 86 4 85 2 105 0.84 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_12 PF08242.7 99 8.2e-05 13.3 0.0 1 2 5.3e-05 0.00074 10.2 0.0 2 71 6 74 5 82 0.87 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_12 PF08242.7 99 8.2e-05 13.3 0.0 2 2 0.084 1.2 -0.1 0.0 29 78 152 207 129 224 0.69 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 PrmA PF06325.8 295 3.4e-05 13.2 0.0 1 1 3.5e-06 4.8e-05 12.6 0.0 164 207 3 46 1 75 0.81 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_4 - 143 MerR PF00376.18 38 6.5e-07 19.1 0.0 1 1 8.2e-08 1.2e-06 18.3 0.0 1 32 5 36 5 38 0.87 # 1905 # 2333 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.380 1_3 - 354 MTS PF05175.9 170 6e-07 19.1 0.0 1 1 7.1e-08 9.9e-07 18.4 0.0 34 108 3 79 1 98 0.90 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 DNA_methylase PF00145.12 335 3e-80 259.8 0.0 1 1 5e-81 3.5e-80 259.6 0.0 2 334 3 350 2 351 0.80 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_5 - 331 DNA_methylase PF00145.12 335 5.1e-79 255.8 0.2 1 2 4.5e-64 3.1e-63 203.9 0.3 2 194 5 204 4 238 0.87 # 4893 # 5885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_5 - 331 DNA_methylase PF00145.12 335 5.1e-79 255.8 0.2 2 2 2.1e-17 1.5e-16 50.5 0.0 279 334 242 316 213 317 0.75 # 4893 # 5885 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 2_4 - 143 HTH_17 PF12728.2 51 1.2e-07 22.2 0.0 1 1 1.2e-08 1.7e-07 21.6 0.0 2 31 4 35 3 51 0.81 # 1905 # 2333 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.380 1_7 - 95 Zn-ribbon_8 PF09723.5 42 0.032 4.5 16.3 1 3 0.00092 0.013 5.7 0.0 24 34 4 14 1 21 0.77 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_7 - 95 Zn-ribbon_8 PF09723.5 42 0.032 4.5 16.3 2 3 0.0063 0.089 3.0 5.5 24 34 28 38 22 44 0.82 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_7 - 95 Zn-ribbon_8 PF09723.5 42 0.032 4.5 16.3 3 3 0.033 0.46 0.7 2.4 24 33 58 67 39 69 0.54 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_7 - 95 Elf1 PF05129.8 81 0.0038 7.1 9.0 1 1 4.7e-05 0.00065 9.6 5.5 22 53 6 37 1 50 0.83 # 6651 # 6935 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.421 1_3 - 354 Methyltransf_11 PF08241.7 95 2.3e-05 15.0 0.3 1 2 3.6e-05 0.00051 10.7 0.0 3 54 7 56 5 75 0.77 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_3 - 354 Methyltransf_11 PF08241.7 95 2.3e-05 15.0 0.3 2 2 0.096 1.3 -0.2 0.1 68 86 295 313 289 314 0.88 # 2498 # 3559 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7f81be82-de3b-4c0b-98c3-ff2ef6bcf5c2 # Target file: checkm_output/bins/pm1400/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1400/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7f81be82-de3b-4c0b-98c3-ff2ef6bcf5c2 checkm_output/bins/pm1400/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:16 2017 # [ok]