# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 87 HTH_AsnC-type PF13404.1 42 7.8e-06 14.4 0.0 1 2 0.00018 0.0011 7.6 0.0 19 35 9 25 7 26 0.90 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_AsnC-type PF13404.1 42 7.8e-06 14.4 0.0 2 2 0.0016 0.0094 4.6 0.0 18 35 54 71 52 78 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_40 PF14493.1 91 9.1e-07 18.1 0.1 1 2 0.00012 0.00074 8.8 0.0 11 33 5 27 1 38 0.90 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_40 PF14493.1 91 9.1e-07 18.1 0.1 2 2 0.00024 0.0014 7.9 0.0 4 31 44 71 41 84 0.82 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_38 PF13936.1 44 1.5e-07 19.9 0.0 1 2 1.6e-05 9.6e-05 11.0 0.0 19 37 6 24 1 27 0.88 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_38 PF13936.1 44 1.5e-07 19.9 0.0 2 2 0.00025 0.0015 7.1 0.0 10 35 43 68 39 78 0.84 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MarR PF01047.17 59 1.6e-07 20.0 0.0 1 2 4.1e-06 2.4e-05 13.0 0.0 15 34 5 24 4 29 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MarR PF01047.17 59 1.6e-07 20.0 0.0 2 2 0.0013 0.008 4.9 0.0 16 40 52 76 45 82 0.86 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_Tnp_4 PF13613.1 53 3.6e-06 15.5 0.0 1 1 9.1e-07 5.5e-06 14.9 0.0 17 39 5 27 4 29 0.93 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Sigma70_r4_2 PF08281.7 54 7.7e-14 40.0 0.2 1 2 3.1e-06 1.9e-05 13.1 0.0 25 43 6 24 4 28 0.94 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Sigma70_r4_2 PF08281.7 54 7.7e-14 40.0 0.2 2 2 6.2e-10 3.7e-09 25.0 0.1 14 49 42 76 41 80 0.91 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Terminase_5 PF06056.7 58 8.7e-07 17.5 0.8 1 2 0.0015 0.009 4.6 0.1 13 41 7 35 6 51 0.79 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Terminase_5 PF06056.7 58 8.7e-07 17.5 0.8 2 2 5.1e-06 3.1e-05 12.5 0.3 3 42 43 82 41 85 0.91 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 GerE PF00196.14 58 5e-09 24.4 0.1 1 2 1.9e-05 0.00011 10.5 0.0 17 35 6 24 1 29 0.87 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 GerE PF00196.14 58 5e-09 24.4 0.1 2 2 5e-06 3e-05 12.3 0.0 16 37 51 72 41 79 0.84 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Trp_repressor PF01371.14 88 2.9e-07 19.4 0.2 1 2 3.3e-05 0.0002 10.3 0.0 47 66 5 24 2 29 0.91 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Trp_repressor PF01371.14 88 2.9e-07 19.4 0.2 2 2 0.00025 0.0015 7.5 0.0 31 70 36 74 33 85 0.83 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Sigma70_r4 PF04545.11 50 3.7e-09 24.9 0.1 1 2 4.8e-06 2.9e-05 12.4 0.0 19 37 6 24 1 25 0.86 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Sigma70_r4 PF04545.11 50 3.7e-09 24.9 0.1 2 2 1.5e-05 8.9e-05 10.8 0.0 7 43 34 76 33 80 0.88 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_37 PF13744.1 80 2.4e-07 19.6 0.1 1 2 0.00014 0.00084 8.2 0.0 28 46 4 22 2 42 0.85 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_37 PF13744.1 80 2.4e-07 19.6 0.1 2 2 3.5e-05 0.00021 10.1 0.0 25 53 47 75 31 85 0.85 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MRP-L20 PF12824.2 164 2e-05 13.5 0.5 1 2 1e-05 6.2e-05 11.9 0.1 106 139 9 40 6 58 0.73 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MRP-L20 PF12824.2 164 2e-05 13.5 0.5 2 2 0.049 0.3 -0.0 0.0 108 131 57 80 52 85 0.68 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MerR_1 PF13411.1 69 8.1e-07 17.8 0.2 1 2 0.0028 0.017 4.0 0.0 3 20 10 27 8 30 0.82 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MerR_1 PF13411.1 69 8.1e-07 17.8 0.2 2 2 5.5e-06 3.3e-05 12.7 0.1 34 67 31 64 24 66 0.88 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_AraC PF00165.18 42 3.8e-05 12.5 0.0 1 2 0.087 0.52 -0.6 0.0 13 23 12 22 7 26 0.61 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_AraC PF00165.18 42 3.8e-05 12.5 0.0 2 2 2.7e-05 0.00016 10.5 0.0 2 32 50 77 49 80 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 GntR PF00392.16 64 2.2e-05 12.9 0.0 1 2 1.6e-05 9.4e-05 10.9 0.0 24 41 8 24 5 29 0.91 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 GntR PF00392.16 64 2.2e-05 12.9 0.0 2 2 0.078 0.47 -1.0 0.0 36 45 54 63 48 75 0.62 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_3 PF01381.17 55 3.7e-12 35.0 0.3 1 2 4.3e-08 2.6e-07 19.5 0.0 8 29 6 27 1 29 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_3 PF01381.17 55 3.7e-12 35.0 0.3 2 2 2.5e-06 1.5e-05 13.8 0.1 4 29 49 73 46 84 0.84 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_23 PF13384.1 50 7.1e-14 40.1 0.3 1 2 5.9e-07 3.6e-06 15.6 0.0 15 38 5 32 2 44 0.79 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_23 PF13384.1 50 7.1e-14 40.1 0.3 2 2 2e-09 1.2e-08 23.5 0.2 6 43 41 79 36 84 0.80 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_7 PF02796.10 45 1.3e-08 23.7 0.2 1 2 8.8e-06 5.3e-05 12.1 0.1 20 43 6 29 4 31 0.88 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_7 PF02796.10 45 1.3e-08 23.7 0.2 2 2 5.6e-05 0.00033 9.5 0.0 6 34 40 66 32 70 0.83 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_19 PF12844.2 64 8.6e-06 14.8 0.2 1 2 5.8e-05 0.00035 9.7 0.0 12 32 7 27 1 44 0.88 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_19 PF12844.2 64 8.6e-06 14.8 0.2 2 2 0.0046 0.027 3.6 0.0 9 21 50 62 46 84 0.82 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_29 PF13551.1 112 1.1e-07 21.0 0.1 1 2 0.0031 0.019 4.2 0.0 9 33 5 28 1 44 0.75 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_29 PF13551.1 112 1.1e-07 21.0 0.1 2 2 7.5e-07 4.5e-06 15.8 0.1 1 41 43 82 43 85 0.93 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_28 PF13518.1 52 4.4e-11 31.7 0.5 1 2 4.5e-06 2.7e-05 13.2 0.0 11 30 6 25 2 40 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_28 PF13518.1 52 4.4e-11 31.7 0.5 2 2 3e-07 1.8e-06 16.9 0.4 1 39 42 80 42 85 0.93 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_24 PF13412.1 48 1.2e-09 26.4 0.0 1 2 3.5e-08 2.1e-07 19.3 0.0 15 37 6 27 3 29 0.87 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_24 PF13412.1 48 1.2e-09 26.4 0.0 2 2 0.00085 0.0051 5.3 0.0 12 41 49 77 47 82 0.80 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_31 PF13560.1 64 7.6e-09 24.7 0.1 1 2 6.5e-06 3.9e-05 12.9 0.0 11 33 4 26 1 33 0.87 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_31 PF13560.1 64 7.6e-09 24.7 0.1 2 2 4.3e-05 0.00026 10.2 0.1 12 34 51 73 37 78 0.80 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_6 PF01418.12 77 2e-05 13.3 0.0 1 2 0.00021 0.0012 7.6 0.0 37 55 10 28 5 29 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_6 PF01418.12 77 2e-05 13.3 0.0 2 2 0.0029 0.018 3.9 0.0 35 56 54 75 41 80 0.90 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_Tnp_ISL3 PF13542.1 52 3.2e-07 18.5 0.0 1 2 4.2e-05 0.00025 9.2 0.0 27 44 7 24 5 27 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_Tnp_ISL3 PF13542.1 52 3.2e-07 18.5 0.0 2 2 0.00015 0.00092 7.4 0.0 23 51 48 77 42 78 0.83 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MerR PF00376.18 38 2.6e-05 12.8 0.0 1 1 1.9e-05 0.00012 10.7 0.0 3 20 11 28 9 31 0.90 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_26 PF13443.1 63 3.6e-05 13.0 0.1 1 2 0.0026 0.016 4.5 0.0 10 30 7 27 3 42 0.83 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_26 PF13443.1 63 3.6e-05 13.0 0.1 2 2 0.00047 0.0028 6.9 0.0 6 32 49 75 43 83 0.90 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_17 PF12728.2 51 3.7e-07 19.4 1.1 1 3 2.4e-05 0.00015 11.1 0.0 2 22 8 28 7 36 0.88 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_17 PF12728.2 51 3.7e-07 19.4 1.1 2 3 0.015 0.092 2.1 0.0 15 26 43 53 40 55 0.78 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_17 PF12728.2 51 3.7e-07 19.4 1.1 3 3 0.0026 0.016 4.6 0.0 2 24 54 76 53 83 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_11 PF08279.7 55 1.3e-08 23.4 0.1 1 2 2.9e-08 1.7e-07 19.8 0.0 12 35 4 27 1 30 0.88 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_11 PF08279.7 55 1.3e-08 23.4 0.1 2 2 0.014 0.082 1.7 0.0 12 32 49 70 42 72 0.77 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Sigma70_ECF PF07638.6 185 1.9e-08 23.1 0.1 1 2 4.8e-06 2.9e-05 12.7 0.0 150 182 6 38 2 41 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 Sigma70_ECF PF07638.6 185 1.9e-08 23.1 0.1 2 2 7.9e-05 0.00047 8.8 0.0 150 169 52 71 41 82 0.87 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MarR_2 PF12802.2 62 1.1e-06 17.3 0.0 1 2 0.00013 0.0008 8.1 0.0 17 38 5 24 3 26 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 MarR_2 PF12802.2 62 1.1e-06 17.3 0.0 2 2 0.00022 0.0013 7.4 0.0 14 50 49 82 40 82 0.85 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_Crp_2 PF13545.1 76 2.7e-05 13.0 0.0 1 2 0.0036 0.021 3.7 0.0 28 45 7 24 2 28 0.89 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 87 HTH_Crp_2 PF13545.1 76 2.7e-05 13.0 0.0 2 2 0.00022 0.0013 7.5 0.0 24 57 49 82 35 84 0.83 # 895 # 1155 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.391 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/78f4ab44-6d44-40d3-b4bc-0be6f380cd0f # Target file: checkm_output/bins/pm1398/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1398/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/78f4ab44-6d44-40d3-b4bc-0be6f380cd0f checkm_output/bins/pm1398/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:07 2017 # [ok]