# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 342 ABC_tran PF00005.22 137 7.8e-05 14.1 0.0 1 1 4.6e-06 0.00013 13.4 0.0 7 34 156 183 153 221 0.91 # 8223 # 9248 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_3 - 261 BSP PF04450.7 205 3e-05 14.6 0.0 1 1 1.6e-06 4.6e-05 14.0 0.0 81 118 66 99 52 124 0.74 # 1094 # 1876 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_20 - 235 NAD_binding_11 PF14833.1 122 0.00036 11.7 1.8 1 2 0.00047 0.013 6.7 0.1 47 119 41 112 27 115 0.81 # 13666 # 14370 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.491 1_20 - 235 NAD_binding_11 PF14833.1 122 0.00036 11.7 1.8 2 2 0.0028 0.077 4.2 0.2 74 112 170 208 116 217 0.87 # 13666 # 14370 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.491 1_9 - 579 FtsK_SpoIIIE PF01580.13 205 9.3e-06 16.3 0.0 1 2 4e-06 0.00011 12.8 0.0 27 63 176 214 166 228 0.81 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 579 FtsK_SpoIIIE PF01580.13 205 9.3e-06 16.3 0.0 2 2 0.016 0.44 1.0 0.0 147 203 366 435 289 437 0.68 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 579 DUF853 PF05872.7 504 3.6e-05 13.3 0.0 1 1 2.2e-06 6e-05 12.5 0.0 8 60 175 228 169 256 0.85 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_4 - 216 CbiA PF01656.18 195 8.8e-16 48.9 0.1 1 1 2e-16 5.6e-15 46.3 0.1 1 189 5 173 5 185 0.74 # 1997 # 2644 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.534 1_21 - 913 AAA_23 PF13476.1 202 2.6e-06 19.0 0.0 1 2 0.062 1.7 -0.0 0.0 134 175 170 258 144 287 0.60 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 913 AAA_23 PF13476.1 202 2.6e-06 19.0 0.0 2 2 6.6e-07 1.8e-05 16.2 0.0 18 53 531 568 519 690 0.75 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 913 SMC_N PF02463.14 220 0.00032 11.1 0.0 1 1 2.6e-05 0.00074 9.9 0.0 14 41 522 549 514 553 0.81 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_9 - 579 TraG-D_C PF12696.2 128 2e-10 31.8 0.0 1 1 1.3e-11 3.7e-10 30.9 0.0 2 90 399 490 398 515 0.84 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_4 - 216 MipZ PF09140.6 261 4.3e-07 20.3 0.3 1 2 1.4e-07 4e-06 17.1 0.0 2 49 4 51 3 64 0.91 # 1997 # 2644 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.534 1_4 - 216 MipZ PF09140.6 261 4.3e-07 20.3 0.3 2 2 0.011 0.31 1.1 0.1 97 135 80 118 65 135 0.77 # 1997 # 2644 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.534 1_21 - 913 AAA_21 PF13304.1 303 2.1e-05 15.7 0.1 1 2 5.3e-06 0.00015 12.9 0.0 2 62 535 588 534 649 0.69 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 913 AAA_21 PF13304.1 303 2.1e-05 15.7 0.1 2 2 0.038 1.1 0.2 0.0 30 92 683 746 667 794 0.74 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_2 - 94 HTH_37 PF13744.1 80 2.2e-14 44.2 0.0 1 1 9.9e-16 2.8e-14 43.9 0.0 12 73 25 85 14 89 0.90 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_2 - 94 HTH_25 PF13413.1 62 2.5e-05 15.0 0.0 1 1 2.8e-06 3.9e-05 14.4 0.0 2 35 36 69 35 88 0.91 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_27 - 119 HTH_25 PF13413.1 62 6.7e-05 13.7 1.5 1 1 6.2e-06 8.7e-05 13.3 0.2 1 19 5 23 5 27 0.89 # 19485 # 19841 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_21 - 913 AAA_16 PF13191.1 185 2.7e-05 15.3 0.0 1 2 2.6e-05 0.00072 10.7 0.0 18 51 526 558 516 584 0.81 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 913 AAA_16 PF13191.1 185 2.7e-05 15.3 0.0 2 2 0.013 0.36 1.9 0.0 136 166 736 765 614 786 0.70 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_9 - 579 AAA_22 PF13401.1 131 9.4e-05 13.7 0.0 1 2 0.00058 0.0081 7.4 0.0 5 63 190 243 185 285 0.70 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 579 AAA_22 PF13401.1 131 9.4e-05 13.7 0.0 2 2 0.0093 0.13 3.5 0.0 71 118 373 427 308 441 0.79 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_21 - 913 AAA_22 PF13401.1 131 0.00029 12.1 0.0 1 2 0.00036 0.005 8.1 0.0 6 28 534 556 529 596 0.76 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 913 AAA_22 PF13401.1 131 0.00029 12.1 0.0 2 2 0.06 0.83 0.9 0.0 77 125 739 789 734 795 0.77 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_2 - 94 HTH_3 PF01381.17 55 5.1e-16 49.5 0.0 1 1 5.3e-17 7.5e-16 49.0 0.0 1 51 36 86 36 89 0.96 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_27 - 119 HTH_3 PF01381.17 55 6.9e-13 39.5 0.0 1 1 1.1e-13 1.5e-12 38.4 0.0 1 55 6 64 6 64 0.97 # 19485 # 19841 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_2 - 94 HTH_23 PF13384.1 50 1.9e-05 15.4 0.0 1 1 1.1e-06 3.1e-05 14.8 0.0 10 37 35 64 23 86 0.78 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_27 - 119 HTH_19 PF12844.2 64 3.6e-15 47.0 0.0 1 1 4.2e-16 5.9e-15 46.3 0.0 2 59 4 65 3 70 0.90 # 19485 # 19841 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_2 - 94 HTH_19 PF12844.2 64 1.5e-13 41.8 0.0 1 1 1.6e-14 2.3e-13 41.2 0.0 2 54 34 86 34 90 0.97 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_20 - 235 ABC_tran_2 PF12848.2 85 0.0026 8.8 12.7 1 3 0.00025 0.007 7.4 0.8 24 72 42 90 34 97 0.85 # 13666 # 14370 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.491 1_20 - 235 ABC_tran_2 PF12848.2 85 0.0026 8.8 12.7 2 3 0.00029 0.0081 7.2 0.3 12 68 126 182 123 193 0.90 # 13666 # 14370 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.491 1_20 - 235 ABC_tran_2 PF12848.2 85 0.0026 8.8 12.7 3 3 0.021 0.58 1.3 0.7 53 69 198 214 192 227 0.66 # 13666 # 14370 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.491 1_3 - 261 SprT-like PF10263.4 157 8.1e-24 75.1 0.0 1 1 5.1e-25 1.4e-23 74.4 0.0 1 126 14 149 14 258 0.84 # 1094 # 1876 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.516 1_9 - 579 TrwB_AAD_bind PF10412.4 386 3.8e-15 46.4 0.0 1 2 5.8e-08 8.1e-07 19.0 0.0 11 52 185 226 181 233 0.93 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 579 TrwB_AAD_bind PF10412.4 386 3.8e-15 46.4 0.0 2 2 8.9e-10 1.2e-08 24.9 0.0 190 379 346 537 328 543 0.73 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_21 - 913 TrwB_AAD_bind PF10412.4 386 0.00013 11.8 0.0 1 2 0.0013 0.018 4.7 0.0 16 33 533 550 526 565 0.72 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_21 - 913 TrwB_AAD_bind PF10412.4 386 0.00013 11.8 0.0 2 2 0.0013 0.018 4.7 0.0 243 318 748 824 737 830 0.85 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_4 - 216 TIGR01968 TIGR01968 261 6.6e-05 13.1 1.0 1 2 4.6e-06 0.00013 12.2 0.3 2 40 3 41 2 46 0.94 # 1997 # 2644 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.534 1_4 - 216 TIGR01968 TIGR01968 261 6.6e-05 13.1 1.0 2 2 0.058 1.6 -1.3 0.0 111 140 81 110 70 143 0.58 # 1997 # 2644 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.534 1_9 - 579 DUF87 PF01935.12 229 1.9e-10 32.0 0.1 1 1 1.5e-11 4.2e-10 30.9 0.1 8 63 174 228 168 409 0.73 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_2 - 94 HTH_24 PF13412.1 48 4.4e-05 14.0 0.0 1 1 2.5e-06 6.9e-05 13.4 0.0 3 36 30 63 28 64 0.91 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_2 - 94 HTH_31 PF13560.1 64 5.2e-15 46.6 0.0 1 1 4.7e-16 6.6e-15 46.3 0.0 2 56 32 85 31 91 0.95 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_27 - 119 HTH_31 PF13560.1 64 1.4e-12 38.9 0.0 1 1 2e-13 2.8e-12 37.9 0.0 5 57 5 60 4 74 0.90 # 19485 # 19841 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_13 - 342 T2SE PF00437.15 272 1.4e-48 156.2 0.0 1 1 5.7e-50 1.6e-48 156.0 0.0 7 240 18 279 12 312 0.94 # 8223 # 9248 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.473 1_9 - 579 T4SS-DNA_transf PF02534.9 469 1.4e-15 47.9 1.5 1 3 0.00072 0.02 4.4 0.0 93 125 140 171 127 184 0.78 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 579 T4SS-DNA_transf PF02534.9 469 1.4e-15 47.9 1.5 2 3 4.9e-06 0.00014 11.6 0.0 43 84 186 231 172 268 0.78 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_9 - 579 T4SS-DNA_transf PF02534.9 469 1.4e-15 47.9 1.5 3 3 1.7e-11 4.8e-10 29.6 0.2 242 436 338 535 334 567 0.80 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_2 - 94 HTH_26 PF13443.1 63 4.7e-07 21.1 0.0 1 1 2.4e-08 6.8e-07 20.6 0.0 1 52 31 85 31 87 0.88 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_26 - 152 TIGR00922 TIGR00922 172 3.6e-06 17.7 0.0 1 1 1.6e-07 4.5e-06 17.4 0.0 27 102 21 98 4 115 0.76 # 18779 # 19234 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.476 1_2 - 94 MarR_2 PF12802.2 62 1.8e-05 15.5 0.0 1 1 1.1e-06 3e-05 14.8 0.0 10 41 35 64 32 72 0.89 # 435 # 716 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_21 - 913 AAA_10 PF12846.2 304 1.3e-35 114.4 0.0 1 1 1.6e-36 2.3e-35 113.5 0.0 2 294 533 822 532 828 0.86 # 14388 # 17126 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_9 - 579 AAA_10 PF12846.2 304 1.6e-12 38.5 0.0 1 1 4.2e-11 5.8e-10 30.1 0.0 2 297 190 477 189 481 0.70 # 4632 # 6368 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.400 1_4 - 216 ArsA_ATPase PF02374.10 305 3.5e-06 17.3 0.6 1 2 4.2e-06 0.00012 12.3 0.3 5 33 7 35 3 40 0.84 # 1997 # 2644 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.534 1_4 - 216 ArsA_ATPase PF02374.10 305 3.5e-06 17.3 0.6 2 2 0.0022 0.063 3.3 0.0 117 151 72 105 63 161 0.71 # 1997 # 2644 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.534 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/61476ad6-8282-4230-b96e-a52a22bc8d63 # Target file: checkm_output/bins/pm1396/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1396/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/61476ad6-8282-4230-b96e-a52a22bc8d63 checkm_output/bins/pm1396/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:42:12 2017 # [ok]