# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_4 - 310 HTH_IclR PF09339.5 52 2.2e-07 20.3 0.1 1 1 5.2e-08 5.8e-07 18.9 0.1 15 40 14 39 13 40 0.95 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_22 PF13309.1 64 6.4e-05 12.6 0.0 1 1 1.2e-05 0.00013 11.6 0.0 46 64 21 39 10 39 0.89 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_AsnC-type PF13404.1 42 4.9e-05 12.7 0.0 1 1 1.3e-05 0.00015 11.2 0.0 18 36 18 36 15 40 0.91 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_40 PF14493.1 91 1.7e-05 14.8 0.0 1 1 3.3e-06 3.6e-05 13.8 0.0 4 35 8 39 5 70 0.91 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_38 PF13936.1 44 1.2e-12 37.1 0.5 1 1 4.5e-13 5e-12 35.1 0.2 6 41 3 38 2 40 0.94 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 MarR PF01047.17 59 3.6e-05 13.3 0.0 1 1 6.3e-06 7e-05 12.4 0.0 9 37 32 60 30 64 0.85 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 TetR_N PF00440.18 47 6.8e-05 12.4 0.1 1 1 1.5e-05 0.00017 11.1 0.0 16 36 17 37 16 43 0.86 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 Sigma70_r4_2 PF08281.7 54 7.4e-09 24.9 0.0 1 1 3.3e-09 1.8e-08 23.6 0.0 25 48 16 39 12 40 0.94 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 Sigma70_r4_2 PF08281.7 54 4.5e-07 19.2 0.0 1 1 2.5e-07 1.4e-06 17.6 0.0 20 45 34 59 34 64 0.89 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 rve PF00665.21 120 5.2e-17 51.9 0.0 1 1 1e-17 1.1e-16 50.8 0.0 3 106 118 230 117 236 0.95 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 Terminase_5 PF06056.7 58 5.5e-05 12.6 0.0 1 1 1.2e-05 0.00014 11.3 0.0 9 36 13 40 9 44 0.85 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 GerE PF00196.14 58 1.8e-07 20.3 0.0 1 1 3.1e-08 3.5e-07 19.4 0.0 17 39 16 38 8 40 0.89 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 Sigma70_r4 PF04545.11 50 5.4e-06 15.6 0.1 1 1 2.2e-06 1.2e-05 14.5 0.1 20 44 40 64 32 66 0.87 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 Sigma70_r4 PF04545.11 50 3.6e-05 12.9 0.2 1 1 3.6e-05 0.0002 10.5 0.1 19 39 16 36 9 39 0.88 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 DUF2316 PF10078.4 89 5.4e-05 13.0 0.0 1 1 9.5e-06 0.0001 12.1 0.0 20 82 14 85 5 91 0.82 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 KorB PF08535.5 93 6.2e-05 13.0 0.0 1 1 2.4e-05 0.00027 11.0 0.0 2 30 16 44 15 108 0.77 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 HTH_37 PF13744.1 80 1e-17 53.6 1.3 1 1 1.1e-18 1.2e-17 53.4 1.3 3 79 9 87 7 88 0.93 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_2 - 100 HTH_25 PF13413.1 62 4.4e-07 19.4 0.2 1 1 7.6e-08 8.4e-07 18.5 0.2 2 34 32 64 31 88 0.79 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_8 - 65 cobW PF02492.14 178 3.4e-05 13.1 0.4 1 1 3.4e-06 3.7e-05 13.0 0.4 128 175 3 49 1 53 0.84 # 6177 # 6371 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.503 1_4 - 310 NUMOD1 PF07453.8 37 2.7e-05 13.9 0.1 1 1 4.3e-06 4.8e-05 13.1 0.1 20 37 21 38 19 38 0.91 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 HTH_3 PF01381.17 55 1.6e-12 37.0 0.5 1 1 5e-13 2.7e-12 36.2 0.5 2 52 33 83 32 85 0.93 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 HTH_3 PF01381.17 55 9.2e-08 21.8 0.1 1 1 3.1e-08 1.7e-07 20.9 0.1 7 37 15 45 8 48 0.91 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_23 PF13384.1 50 7.9e-10 28.1 0.0 1 1 4.5e-10 2.5e-09 26.5 0.0 9 40 9 40 2 43 0.89 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 HTH_23 PF13384.1 50 2.5e-05 13.7 0.0 1 1 1.2e-05 6.5e-05 12.5 0.0 12 37 33 60 30 65 0.82 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 HTH_7 PF02796.10 45 2.6e-12 36.3 0.3 1 1 5.9e-13 6.5e-12 35.0 0.3 13 44 9 40 5 41 0.93 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 HTH_19 PF12844.2 64 1.5e-08 24.5 0.1 1 1 4.4e-09 2.4e-08 23.8 0.1 7 54 35 82 32 89 0.90 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 HTH_19 PF12844.2 64 1.5e-06 18.1 0.0 1 1 4.6e-07 2.5e-06 17.3 0.0 7 52 12 58 11 70 0.82 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_29 PF13551.1 112 2.6e-07 20.7 0.1 1 1 8.3e-08 9.1e-07 18.9 0.1 6 35 12 40 8 93 0.74 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_28 PF13518.1 52 4.4e-09 26.1 0.1 1 1 1.1e-09 1.2e-08 24.7 0.1 7 34 12 39 8 40 0.89 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_24 PF13412.1 48 4.2e-08 22.4 0.1 1 1 1.4e-08 7.5e-08 21.6 0.1 10 40 11 40 10 43 0.89 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 HTH_24 PF13412.1 48 1.8e-05 13.9 0.3 1 1 1.2e-05 6.5e-05 12.2 0.0 18 36 41 59 34 60 0.93 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 HTH_30 PF13556.1 59 8.4e-06 15.2 0.0 1 1 1.7e-06 1.9e-05 14.1 0.0 10 34 15 39 10 43 0.86 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_10 PF04967.7 53 2.2e-05 13.8 0.0 1 1 3.9e-06 4.3e-05 12.9 0.0 24 45 18 39 15 43 0.89 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 HTH_31 PF13560.1 64 5.4e-13 38.9 0.0 1 1 1.5e-13 8e-13 38.3 0.0 6 56 32 81 31 90 0.92 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 HTH_31 PF13560.1 64 2.6e-06 17.5 0.0 1 1 1.2e-06 6.6e-06 16.2 0.0 12 54 15 60 13 61 0.85 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 HTH_6 PF01418.12 77 3.1e-06 16.7 0.1 1 1 3.9e-07 4.3e-06 16.3 0.1 17 56 23 62 6 73 0.89 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 HTH_Tnp_ISL3 PF13542.1 52 1.8e-06 16.9 0.1 1 1 6.8e-07 7.5e-06 15.0 0.0 21 49 11 39 2 40 0.82 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 CENP-B_N PF04218.8 53 7e-06 15.3 0.1 1 1 1.2e-06 1.3e-05 14.5 0.1 20 47 15 42 2 43 0.83 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 GcrA PF07750.6 162 1.3e-05 15.3 0.0 1 1 2.1e-06 2.3e-05 14.4 0.0 6 36 5 34 2 53 0.93 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_26 PF13443.1 63 1.7e-07 21.2 0.0 1 1 5.9e-08 3.2e-07 20.4 0.0 4 41 11 48 10 58 0.90 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 HTH_26 PF13443.1 63 2.4e-06 17.6 0.1 1 1 7.9e-07 4.3e-06 16.7 0.1 4 45 34 74 32 81 0.81 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 HTH_17 PF12728.2 51 0.0001 12.4 0.9 1 1 2.2e-05 0.00024 11.2 0.1 6 26 22 43 18 86 0.88 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_11 PF08279.7 55 1.4e-07 20.9 0.1 1 1 3.1e-08 3.4e-07 19.7 0.1 8 37 12 39 5 40 0.80 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 100 MarR_2 PF12802.2 62 1.7e-05 14.3 0.1 1 1 5.2e-06 5.7e-05 12.6 0.1 21 41 40 60 2 63 0.85 # 1428 # 1727 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_4 - 310 TrmB PF01978.14 68 2.7e-05 13.7 0.0 1 1 5e-06 5.5e-05 12.7 0.0 16 44 11 39 10 40 0.93 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 DUF1670 PF07900.6 220 0.00011 11.3 0.1 1 1 1.6e-05 0.00017 10.6 0.1 189 219 9 39 4 40 0.92 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_4 - 310 HTH_20 PF12840.2 61 3.7e-05 13.4 0.0 1 1 7.2e-06 7.9e-05 12.3 0.0 19 46 13 39 10 40 0.89 # 3335 # 4264 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.530 1_6 - 78 IstB_IS21 PF01695.12 178 5.3e-26 80.9 0.1 1 1 1e-26 5.6e-26 80.8 0.1 67 141 1 76 1 77 0.96 # 4725 # 4958 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_7 - 62 IstB_IS21 PF01695.12 178 4.4e-14 42.0 0.1 1 1 9.7e-15 5.3e-14 41.8 0.1 143 178 1 37 1 37 0.95 # 4955 # 5140 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.500 1_8 - 65 Phe_tRNA-synt_N PF02912.13 73 3.1e-05 13.5 0.1 1 1 4.4e-06 4.9e-05 12.9 0.1 26 61 22 57 21 61 0.94 # 6177 # 6371 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.503 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/60099aaa-9a26-4d48-9d3b-c2c355293c12 # Target file: checkm_output/bins/pm1361/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1361/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/60099aaa-9a26-4d48-9d3b-c2c355293c12 checkm_output/bins/pm1361/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:41:15 2017 # [ok]