# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 293 HTH_DeoR PF08220.7 57 0.00015 11.7 0.0 1 1 1.9e-05 0.00032 10.7 0.0 1 39 14 52 14 56 0.85 # 10241 # 11119 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_4 - 217 Sigma70_r4 PF04545.11 50 2.6e-06 17.2 0.1 1 1 1.5e-07 2.6e-06 17.2 0.1 7 41 170 204 169 207 0.96 # 2771 # 3421 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_4 - 217 HTH_23 PF13384.1 50 5.7e-09 26.0 0.2 1 1 1.8e-09 1.5e-08 24.6 0.2 4 43 169 209 166 214 0.79 # 2771 # 3421 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_16 - 123 HTH_23 PF13384.1 50 0.00028 11.0 0.2 1 1 3.3e-05 0.00028 11.0 0.2 18 36 4 22 2 22 0.94 # 11182 # 11550 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_4 - 217 HTH_28 PF13518.1 52 9.5e-06 16.1 0.2 1 1 1.3e-06 2.1e-05 14.9 0.2 2 38 171 209 170 213 0.84 # 2771 # 3421 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_4 - 217 HTH_31 PF13560.1 64 1.9e-05 15.3 0.2 1 1 5.6e-06 9.5e-05 13.1 0.1 9 34 178 203 143 205 0.80 # 2771 # 3421 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_16 - 123 HTH_17 PF12728.2 51 8.3e-06 16.5 0.0 1 1 8.4e-07 1.4e-05 15.7 0.0 2 26 4 28 3 50 0.83 # 11182 # 11550 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_17 - 111 Ribosomal_L20 PF00453.13 108 2.3e-05 14.7 0.0 1 1 1.9e-06 3.3e-05 14.3 0.0 46 98 16 69 2 77 0.90 # 12419 # 12751 # -1 # ID=1_17;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/ca42704d-c1f2-4fa6-bdfa-8a9357f6da9f # Target file: checkm_output/bins/pm1360/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1360/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ca42704d-c1f2-4fa6-bdfa-8a9357f6da9f checkm_output/bins/pm1360/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:41:08 2017 # [ok]