# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 440 ATP-synt_ab PF00006.20 215 2.1e-77 252.1 0.0 1 1 3.1e-79 2.8e-77 251.7 0.0 2 215 149 358 148 358 0.99 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 3_19 - 184 HTH_IclR PF09339.5 52 4.3e-05 15.8 0.0 1 1 1.4e-06 0.00012 14.4 0.0 11 37 151 177 150 181 0.89 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_22 - 440 ABC_tran PF00005.22 137 0.00028 13.9 0.2 1 1 8.6e-06 0.00076 12.5 0.1 6 35 157 186 155 209 0.91 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 3_19 - 184 HTH_22 PF13309.1 64 0.00053 12.5 1.1 1 1 1.9e-05 0.0017 10.9 0.1 45 63 161 179 143 180 0.87 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_10 - 162 rve_3 PF13683.1 67 8.5e-35 110.9 0.3 1 1 1e-35 1.3e-34 110.3 0.3 1 67 74 140 74 140 0.99 # 6758 # 7243 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 2_16 - 159 rve_3 PF13683.1 67 2.5e-32 103.0 0.1 1 1 3.8e-33 4.7e-32 102.1 0.1 2 67 80 145 79 145 0.98 # 15704 # 16180 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_15 - 252 rve_3 PF13683.1 67 3.7e-32 102.5 2.8 1 1 9.7e-33 1.2e-31 100.8 0.1 2 67 173 238 172 238 0.98 # 10026 # 10781 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 2_18 - 92 rve_3 PF13683.1 67 9.8e-16 49.9 0.1 1 1 1e-16 1.3e-15 49.5 0.1 31 67 38 74 22 74 0.91 # 18719 # 18994 # -1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 2_5 - 65 rve_3 PF13683.1 67 2.5e-11 35.8 0.0 1 1 2.3e-12 2.9e-11 35.5 0.0 5 55 2 53 1 54 0.96 # 4041 # 4235 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 3_1 - 65 rve_3 PF13683.1 67 5.8e-11 34.6 0.0 1 1 5.5e-12 6.9e-11 34.3 0.0 5 55 2 53 1 54 0.96 # 303 # 497 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.497 3_12 - 391 rve_3 PF13683.1 67 1.5e-07 23.7 0.1 1 1 3.1e-08 3.9e-07 22.3 0.1 9 52 219 263 215 268 0.92 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_19 - 184 HTH_40 PF14493.1 91 2.6e-05 17.1 0.4 1 1 1.1e-06 9.3e-05 15.4 0.1 7 32 152 177 147 181 0.90 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 TIGR03010 TIGR03010 116 0.00059 12.2 0.1 1 2 0.057 5.1 -0.4 0.0 6 23 34 51 30 56 0.80 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 TIGR03010 TIGR03010 116 0.00059 12.2 0.1 2 2 5.3e-05 0.0047 9.4 0.1 15 42 69 97 66 99 0.92 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 HTH_38 PF13936.1 44 5.8e-10 31.4 0.2 1 1 1.3e-11 5.8e-10 31.4 0.2 10 41 148 179 147 181 0.94 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 HTH_38 PF13936.1 44 1.2e-06 20.7 0.1 1 1 7.5e-08 3.3e-06 19.4 0.1 5 42 2 39 2 39 0.94 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_19 - 184 MarR PF01047.17 59 0.00011 14.6 0.0 1 1 2.7e-06 0.00024 13.6 0.0 15 39 156 180 151 181 0.86 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_33 - 402 TBPIP PF07106.8 169 0.01 8.1 12.7 1 2 9.4e-05 0.0083 8.4 4.8 93 145 108 160 102 165 0.90 # 23874 # 25079 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.467 1_33 - 402 TBPIP PF07106.8 169 0.01 8.1 12.7 2 2 0.002 0.18 4.1 1.0 65 100 344 378 328 393 0.72 # 23874 # 25079 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.467 1_32 - 169 TIGR03302 TIGR03302 239 0.00017 13.5 0.2 1 1 3.6e-06 0.00032 12.6 0.2 26 59 29 62 13 95 0.79 # 23390 # 23896 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 3_2 - 389 HTH_8 PF02954.14 42 4.3e-05 15.8 0.1 1 1 2e-06 8.8e-05 14.8 0.1 18 36 39 57 37 58 0.94 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_44 - 64 HTH_8 PF02954.14 42 9e-05 14.8 0.0 1 1 2.6e-06 0.00011 14.5 0.0 8 42 18 51 13 51 0.93 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_19 - 184 TetR_N PF00440.18 47 0.00028 13.3 0.0 1 1 1.6e-05 0.0014 11.0 0.0 9 34 154 176 151 177 0.89 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_13 - 144 AAA_19 PF13245.1 76 9.2e-08 24.5 0.2 1 2 0.068 6 -0.5 0.0 51 75 47 72 26 73 0.84 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_19 PF13245.1 76 9.2e-08 24.5 0.2 2 2 4.2e-09 3.7e-07 22.6 0.1 13 48 100 131 87 133 0.88 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_2 - 389 CbiA PF01656.18 195 5.7e-33 106.7 0.0 1 1 1.8e-34 7.8e-33 106.2 0.0 1 188 109 333 109 340 0.76 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 CbiA PF01656.18 195 3e-05 16.2 0.0 1 1 1.3e-06 5.9e-05 15.2 0.0 9 31 107 129 100 132 0.94 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_19 - 184 Sigma70_r4_2 PF08281.7 54 5e-05 15.5 0.1 1 1 1.2e-06 0.0001 14.5 0.1 15 44 148 176 146 179 0.89 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_15 - 252 rve PF00665.21 120 3.9e-24 77.8 0.0 1 1 5.5e-25 7e-24 77.0 0.0 6 120 89 201 84 201 0.94 # 10026 # 10781 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 2_16 - 159 rve PF00665.21 120 1.8e-22 72.5 0.0 1 1 2e-23 2.6e-22 72.0 0.0 12 120 2 108 1 108 0.92 # 15704 # 16180 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_10 - 162 rve PF00665.21 120 5.4e-22 70.9 0.0 1 1 1.2e-22 1.5e-21 69.5 0.0 21 120 6 103 1 103 0.93 # 6758 # 7243 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 3_12 - 391 rve PF00665.21 120 6.1e-20 64.3 0.0 1 1 9.8e-21 1.2e-19 63.3 0.0 3 119 113 239 112 240 0.94 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_18 - 92 rve PF00665.21 120 1.3e-06 21.3 0.0 1 1 1.4e-07 1.8e-06 20.8 0.0 64 96 9 39 1 45 0.83 # 18719 # 18994 # -1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 3_1 - 65 rve PF00665.21 120 0.00019 14.3 0.0 1 1 2.2e-05 0.00028 13.7 0.0 95 120 2 27 1 27 0.95 # 303 # 497 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.497 2_5 - 65 rve PF00665.21 120 0.00019 14.3 0.0 1 1 2.2e-05 0.00028 13.7 0.0 95 120 2 27 1 27 0.95 # 4041 # 4235 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 3_16 - 89 Terminase_5 PF06056.7 58 5.9e-05 15.4 0.0 1 1 1.6e-06 0.00014 14.2 0.0 15 46 23 54 20 61 0.85 # 10859 # 11125 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 3_13 - 144 AAA_24 PF13479.1 213 0.00045 12.5 0.0 1 1 7.7e-06 0.00068 12.0 0.0 5 23 99 117 95 129 0.86 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_22 - 440 AAA_30 PF13604.1 196 0.0004 12.7 0.7 1 3 0.063 5.5 -0.8 0.0 47 72 61 86 53 96 0.91 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_22 - 440 AAA_30 PF13604.1 196 0.0004 12.7 0.7 2 3 0.00015 0.013 7.8 0.1 16 63 160 204 155 214 0.70 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_22 - 440 AAA_30 PF13604.1 196 0.0004 12.7 0.7 3 3 0.014 1.2 1.4 0.0 16 70 225 275 213 277 0.76 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 3_16 - 89 HTH_Tnp_1 PF01527.15 76 2.8e-21 68.1 0.1 1 1 1.9e-22 3.3e-21 67.8 0.1 1 75 1 71 1 72 0.96 # 10859 # 11125 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 2_19 - 89 HTH_Tnp_1 PF01527.15 76 3.5e-21 67.7 0.2 1 1 2.4e-22 4.2e-21 67.5 0.2 1 75 1 71 1 72 0.96 # 19470 # 19736 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.434 1_44 - 64 HTH_Tnp_1 PF01527.15 76 1.9e-18 59.0 0.2 1 1 1.1e-19 2e-18 58.9 0.2 2 56 6 61 5 64 0.90 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_23 - 87 HTH_Tnp_1 PF01527.15 76 1.4e-13 43.4 0.4 1 1 1.2e-14 2e-13 42.9 0.4 21 76 6 62 2 62 0.93 # 17813 # 18073 # -1 # ID=3_23;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 2_6 - 37 HTH_Tnp_1 PF01527.15 76 5e-06 19.2 0.0 1 1 2.9e-07 5.2e-06 19.2 0.0 4 29 3 28 1 31 0.89 # 4259 # 4369 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.477 1_23 - 294 TIGR00464 TIGR00464 470 0.00016 13.0 0.3 1 1 2.5e-06 0.00022 12.6 0.3 350 424 39 115 19 132 0.82 # 17324 # 18205 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.464 3_19 - 184 GerE PF00196.14 58 2.5e-05 16.3 0.1 1 1 1.1e-06 5e-05 15.3 0.1 10 35 150 175 148 181 0.91 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 GerE PF00196.14 58 0.00014 13.9 0.0 1 1 7.6e-06 0.00034 12.7 0.0 17 40 16 39 9 40 0.85 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_13 - 144 Bac_DnaA PF00308.13 219 0.00072 11.9 0.0 1 1 1.4e-05 0.0012 11.2 0.0 34 68 97 129 71 136 0.77 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_2 - 389 MipZ PF09140.6 261 1.7e-06 20.0 0.1 1 2 8.4e-08 7.4e-06 17.9 0.0 3 47 109 153 107 168 0.90 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_2 - 389 MipZ PF09140.6 261 1.7e-06 20.0 0.1 2 2 0.043 3.8 -0.8 0.0 88 128 224 264 211 274 0.76 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_16 - 89 DivIC PF04977.10 80 3.1e-05 16.2 2.8 1 1 3.5e-07 3.1e-05 16.2 2.8 32 65 55 88 52 88 0.92 # 10859 # 11125 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 2_14 - 217 Sigma70_r4 PF04545.11 50 1.3e-05 17.2 0.1 1 1 1.5e-07 1.3e-05 17.2 0.1 7 41 170 204 169 207 0.96 # 11489 # 12139 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 1_22 - 440 TIGR00962 TIGR00962 503 7.9e-53 172.2 0.0 1 1 1.1e-54 9.5e-53 171.9 0.0 64 414 65 410 18 433 0.87 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 3_13 - 144 AAA PF00004.24 132 6.6e-06 19.1 0.1 1 2 0.069 6.1 -0.2 0.0 23 53 31 61 4 67 0.66 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA PF00004.24 132 6.6e-06 19.1 0.1 2 2 3.3e-07 2.9e-05 17.0 0.1 1 21 100 120 100 138 0.82 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 2_16 - 159 rve_2 PF13333.1 52 8e-09 28.3 0.0 1 1 8.3e-10 1.5e-08 27.4 0.0 1 48 98 149 98 152 0.96 # 15704 # 16180 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_15 - 252 rve_2 PF13333.1 52 1.7e-08 27.2 0.0 1 1 1.9e-09 3.4e-08 26.2 0.0 1 48 191 242 191 245 0.96 # 10026 # 10781 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 3_10 - 162 rve_2 PF13333.1 52 3.8e-07 22.9 0.0 1 1 3.6e-08 6.3e-07 22.2 0.0 1 47 93 143 93 146 0.96 # 6758 # 7243 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 2_5 - 65 rve_2 PF13333.1 52 2.8e-06 20.1 0.0 1 1 2.2e-07 3.9e-06 19.7 0.0 1 35 17 52 17 54 0.93 # 4041 # 4235 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.492 3_1 - 65 rve_2 PF13333.1 52 7.5e-06 18.7 0.0 1 1 6e-07 1e-05 18.3 0.0 1 35 17 52 17 54 0.93 # 303 # 497 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.497 3_2 - 389 MerR_1 PF13411.1 69 2.2e-09 29.8 0.0 1 1 2.2e-10 6.4e-09 28.3 0.0 2 43 41 87 40 97 0.77 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_44 - 64 MerR_1 PF13411.1 69 5.2e-05 15.7 0.1 1 1 6.1e-06 0.00018 14.0 0.0 5 25 32 52 28 60 0.90 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_23 - 87 MerR_1 PF13411.1 69 0.00014 14.3 0.4 1 1 1.1e-05 0.00031 13.3 0.0 5 25 13 33 9 43 0.89 # 17813 # 18073 # -1 # ID=3_23;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 3_13 - 144 AAA_16 PF13191.1 185 4e-07 22.9 0.1 1 2 0.0026 0.23 4.1 0.0 122 173 20 88 2 96 0.61 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_16 PF13191.1 185 4e-07 22.9 0.1 2 2 2.3e-07 2.1e-05 17.3 0.0 23 61 96 134 87 139 0.81 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_22 PF13401.1 131 0.0003 13.7 0.0 1 1 7.7e-06 0.00068 12.5 0.0 6 24 99 117 94 138 0.83 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 TIGR00362 TIGR00362 437 1.7e-05 16.4 0.0 1 1 1.9e-07 1.7e-05 16.4 0.0 136 172 96 130 6 135 0.74 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_13 - 272 HTH_AraC PF00165.18 42 1.6e-23 74.7 0.2 1 3 0.067 5.9 -0.3 0.0 7 24 134 152 133 153 0.84 # 8385 # 9200 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.415 1_13 - 272 HTH_AraC PF00165.18 42 1.6e-23 74.7 0.2 2 3 2.4e-11 2.1e-09 29.8 0.0 1 41 173 213 173 214 0.97 # 8385 # 9200 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.415 1_13 - 272 HTH_AraC PF00165.18 42 1.6e-23 74.7 0.2 3 3 7e-15 6.2e-13 41.0 0.1 6 41 227 263 225 264 0.93 # 8385 # 9200 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.415 3_19 - 184 NUMOD1 PF07453.8 37 0.00045 12.8 0.1 1 1 9.9e-06 0.00087 11.9 0.1 20 37 162 179 160 179 0.93 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 HTH_Tnp_Tc3_1 PF11427.3 50 0.00063 12.2 0.0 1 1 1.7e-05 0.0015 11.0 0.0 12 44 9 41 2 43 0.92 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_19 - 184 HTH_Tnp_IS630 PF01710.11 120 0.00018 14.0 0.1 1 1 5.5e-06 0.00048 12.5 0.0 8 40 148 180 145 183 0.90 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_13 - 144 AAA_28 PF13521.1 163 0.00017 14.3 0.0 1 2 0.049 4.3 -0.0 0.0 98 125 22 49 6 76 0.55 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_28 PF13521.1 163 0.00017 14.3 0.0 2 2 9.5e-06 0.00084 12.1 0.0 2 25 100 127 99 136 0.76 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_2 - 389 HTH_3 PF01381.17 55 1.8e-05 17.3 0.0 1 1 9.9e-07 4.4e-05 16.1 0.0 10 41 40 71 32 87 0.84 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_19 - 184 HTH_3 PF01381.17 55 0.00013 14.6 0.1 1 1 5.7e-06 0.00025 13.6 0.1 2 31 149 180 149 183 0.88 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 2_14 - 217 HTH_23 PF13384.1 50 2.9e-08 26.0 0.2 1 1 7e-09 7.7e-08 24.6 0.2 4 43 169 209 166 214 0.79 # 11489 # 12139 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 3_16 - 89 HTH_23 PF13384.1 50 6.4e-08 24.9 0.1 1 1 1.5e-08 1.6e-07 23.6 0.0 13 45 14 47 5 54 0.79 # 10859 # 11125 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 3_19 - 184 HTH_23 PF13384.1 50 1.1e-07 24.2 1.1 1 1 3.2e-08 3.5e-07 22.5 0.1 2 39 143 180 142 182 0.91 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_44 - 64 HTH_23 PF13384.1 50 2.4e-07 23.0 0.0 1 1 2.8e-08 3.1e-07 22.7 0.0 7 45 16 54 12 60 0.82 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_12 - 391 HTH_23 PF13384.1 50 1e-06 21.1 0.1 1 1 2.3e-07 2.6e-06 19.8 0.1 10 39 10 39 8 40 0.92 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 2_19 - 89 HTH_23 PF13384.1 50 2.5e-06 19.8 0.0 1 1 4.7e-07 5.2e-06 18.8 0.0 8 47 12 49 7 52 0.82 # 19470 # 19736 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.434 3_23 - 87 HTH_23 PF13384.1 50 4.2e-06 19.1 2.3 1 1 4e-07 4.4e-06 19.0 0.1 19 45 10 35 3 41 0.83 # 17813 # 18073 # -1 # ID=3_23;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 3_2 - 389 HTH_23 PF13384.1 50 5.3e-05 15.6 0.2 1 1 1.4e-05 0.00016 14.1 0.2 17 37 39 59 32 61 0.87 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_19 - 184 HTH_7 PF02796.10 45 7e-15 47.4 1.3 1 1 3.3e-16 1.4e-14 46.4 0.4 1 44 141 181 141 182 0.97 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 HTH_7 PF02796.10 45 7.5e-06 18.5 0.3 1 1 3.3e-07 1.5e-05 17.6 0.3 7 42 3 38 1 40 0.91 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_13 - 144 Mg_chelatase PF01078.16 207 0.00023 13.1 0.0 1 1 3.9e-06 0.00035 12.5 0.0 24 42 99 117 84 127 0.90 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_19 - 184 HTH_29 PF13551.1 112 2.4e-07 23.6 0.3 1 1 8e-08 1.8e-06 20.9 0.0 1 35 148 181 148 183 0.95 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_16 - 89 HTH_29 PF13551.1 112 3.3e-07 23.2 0.1 1 1 2.2e-08 4.8e-07 22.7 0.1 4 48 14 56 10 86 0.78 # 10859 # 11125 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 3_23 - 87 HTH_29 PF13551.1 112 1.7e-05 17.7 0.2 1 1 1.2e-06 2.7e-05 17.1 0.2 15 67 11 57 3 75 0.72 # 17813 # 18073 # -1 # ID=3_23;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_44 - 64 HTH_29 PF13551.1 112 5.3e-05 16.1 0.0 1 1 3.5e-06 7.6e-05 15.6 0.0 14 40 29 55 16 64 0.79 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_44 - 64 Sigma70_r3 PF04539.11 78 0.00033 13.3 0.1 1 1 4.4e-06 0.00039 13.1 0.1 15 53 22 60 17 64 0.82 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 1_22 - 440 Arch_ATPase PF01637.13 234 0.00073 12.0 0.0 1 1 1.4e-05 0.0012 11.3 0.0 30 131 172 265 150 273 0.79 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 3_13 - 144 PhoH PF02562.11 205 1.9e-06 20.0 0.0 1 1 3.1e-08 2.7e-06 19.4 0.0 16 47 94 125 80 141 0.85 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_5 PF07728.9 139 3.6e-06 19.5 0.1 1 2 0.045 3.9 -0.1 0.0 91 126 13 49 3 61 0.52 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_5 PF07728.9 139 3.6e-06 19.5 0.1 2 2 2e-07 1.8e-05 17.2 0.0 1 37 99 138 99 140 0.81 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 TIGR00763 TIGR00763 795 0.00052 10.9 0.0 1 1 7.7e-06 0.00068 10.5 0.0 356 372 100 116 81 128 0.86 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_2 - 389 TIGR01968 TIGR01968 261 5.9e-07 21.4 0.1 1 2 6e-06 0.00053 11.8 0.0 3 38 108 143 106 145 0.94 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_2 - 389 TIGR01968 TIGR01968 261 5.9e-07 21.4 0.1 2 2 0.00011 0.0098 7.6 0.0 102 143 225 265 214 316 0.86 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 AAA_18 PF13238.1 129 0.00013 15.0 0.1 1 1 3.6e-06 0.00032 13.8 0.0 1 19 100 118 100 139 0.79 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_2 - 211 FliH PF02108.11 128 9.5e-20 63.5 3.7 1 1 1.1e-21 9.5e-20 63.5 3.7 8 128 74 195 67 195 0.89 # 851 # 1483 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_2 - 211 HrpE PF06188.7 191 7e-12 38.2 7.3 1 1 1e-13 8.8e-12 37.8 7.3 20 153 20 153 13 189 0.87 # 851 # 1483 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_22 - 440 DUF87 PF01935.12 229 5.1e-05 15.9 0.2 1 1 1.3e-06 0.00012 14.7 0.2 24 47 163 186 162 193 0.91 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_44 - 64 HTH_28 PF13518.1 52 2.9e-10 32.8 0.0 1 1 3e-11 3.8e-10 32.4 0.0 1 43 15 57 15 62 0.90 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_16 - 89 HTH_28 PF13518.1 52 6.6e-09 28.4 0.0 1 1 9.6e-10 1.2e-08 27.6 0.0 5 46 14 55 10 68 0.92 # 10859 # 11125 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 3_19 - 184 HTH_28 PF13518.1 52 1.6e-07 24.0 0.0 1 1 3.6e-08 4.5e-07 22.6 0.0 2 34 148 180 147 183 0.93 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_23 - 87 HTH_28 PF13518.1 52 3.1e-07 23.1 0.0 1 1 4.9e-08 6.2e-07 22.1 0.0 14 44 10 39 4 44 0.83 # 17813 # 18073 # -1 # ID=3_23;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 2_19 - 89 HTH_28 PF13518.1 52 7.5e-06 18.7 0.1 1 1 8.6e-07 1.1e-05 18.2 0.1 3 37 12 46 10 60 0.91 # 19470 # 19736 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.434 2_14 - 217 HTH_28 PF13518.1 52 4.9e-05 16.1 0.2 1 1 8.8e-06 0.00011 14.9 0.2 2 38 171 209 170 213 0.84 # 11489 # 12139 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 3_2 - 389 HTH_28 PF13518.1 52 0.00088 12.1 0.1 1 1 0.00016 0.002 10.9 0.1 11 31 38 58 32 61 0.86 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_13 - 272 HTH_18 PF12833.2 81 1.4e-25 82.0 0.6 1 2 0.013 1.1 2.2 0.0 44 77 134 167 115 171 0.80 # 8385 # 9200 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.415 1_13 - 272 HTH_18 PF12833.2 81 1.4e-25 82.0 0.6 2 2 3.3e-26 2.9e-24 77.8 0.2 2 79 187 263 186 265 0.97 # 8385 # 9200 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.415 3_19 - 184 HTH_10 PF04967.7 53 0.00013 14.2 0.0 1 1 3.7e-06 0.00033 13.0 0.0 25 47 160 182 156 183 0.88 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_2 - 389 HTH_31 PF13560.1 64 3.7e-05 16.7 0.0 1 1 2.5e-06 0.00011 15.2 0.0 12 45 37 69 32 89 0.84 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 2_14 - 217 HTH_31 PF13560.1 64 0.0001 15.3 0.2 1 1 1.1e-05 0.00049 13.1 0.1 9 34 178 203 143 205 0.80 # 11489 # 12139 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.527 3_24 - 153 UvrD_C_2 PF13538.1 104 2.9e-05 16.9 0.0 1 1 4.8e-07 4.2e-05 16.4 0.0 2 80 58 140 57 152 0.71 # 18152 # 18610 # 1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 3_13 - 144 NACHT PF05729.7 166 0.00018 13.9 0.0 1 1 4.8e-06 0.00042 12.7 0.0 3 27 100 124 98 137 0.84 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_17 PF13207.1 121 1.1e-05 18.9 0.0 1 2 0.025 2.2 1.9 0.0 20 53 8 46 4 91 0.62 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_17 PF13207.1 121 1.1e-05 18.9 0.0 2 2 1.8e-06 0.00016 15.3 0.0 2 20 100 118 99 136 0.80 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_37 - 72 Transposase_mut PF00872.13 381 3.7e-11 34.8 0.0 1 1 4.7e-13 4.1e-11 34.7 0.0 337 379 2 44 1 46 0.97 # 28892 # 29107 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.407 3_13 - 144 TIGR03346 TIGR03346 853 0.00034 11.4 0.0 1 1 5.3e-06 0.00047 10.9 0.0 581 622 84 124 79 137 0.78 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_25 PF13481.1 194 2.7e-07 22.9 0.0 1 1 8.4e-09 3.7e-07 22.4 0.0 22 64 81 129 57 138 0.76 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_22 - 440 AAA_25 PF13481.1 194 3.2e-05 16.1 0.0 1 1 1.7e-06 7.4e-05 14.9 0.0 24 157 151 267 135 285 0.69 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_2 - 211 NolV PF06635.7 207 2.6e-13 42.3 2.4 1 1 3.6e-15 3.2e-13 42.0 2.4 35 196 35 197 17 206 0.91 # 851 # 1483 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 3_13 - 144 RuvB_N PF05496.7 234 6.5e-05 14.7 0.0 1 1 9.6e-07 8.5e-05 14.4 0.0 48 70 95 117 68 137 0.85 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_2 - 389 VirC1 PF07015.6 231 8.7e-06 17.6 0.1 1 2 2.5e-05 0.0022 9.8 0.0 4 42 109 147 107 153 0.91 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_2 - 389 VirC1 PF07015.6 231 8.7e-06 17.6 0.1 2 2 0.00054 0.048 5.4 0.0 100 139 251 290 218 321 0.72 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_44 - 64 HTH_Tnp_ISL3 PF13542.1 52 1.8e-05 16.6 0.0 1 1 5.1e-07 2.3e-05 16.3 0.0 9 51 8 51 7 52 0.96 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_12 - 391 HTH_Tnp_ISL3 PF13542.1 52 0.00036 12.5 0.0 1 1 2e-05 0.0009 11.2 0.0 32 49 22 39 20 40 0.92 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_2 - 389 MerR PF00376.18 38 3.3e-12 38.6 0.1 1 1 4e-13 1.2e-11 36.8 0.0 1 30 41 69 41 71 0.89 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 1_44 - 64 MerR PF00376.18 38 0.00068 12.0 0.1 1 1 6.8e-05 0.002 10.5 0.0 4 22 32 50 29 52 0.90 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_12 - 391 MerR PF00376.18 38 0.002 10.5 2.5 1 2 0.00061 0.018 7.4 0.1 4 21 22 39 19 48 0.86 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_12 - 391 MerR PF00376.18 38 0.002 10.5 2.5 2 2 0.034 1 1.8 0.6 14 21 90 97 89 110 0.71 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_13 - 144 AAA_33 PF13671.1 143 0.00022 13.8 0.3 1 2 0.07 6.2 -0.6 0.0 44 44 39 39 4 77 0.46 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 AAA_33 PF13671.1 143 0.00022 13.8 0.3 2 2 8.7e-06 0.00076 12.1 0.1 2 19 100 117 100 129 0.85 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_19 - 184 CENP-B_N PF04218.8 53 2.5e-05 16.4 0.4 1 1 1.4e-06 6.1e-05 15.2 0.0 19 45 155 181 150 183 0.87 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_44 - 64 CENP-B_N PF04218.8 53 0.00056 12.1 0.1 1 1 1.5e-05 0.00064 11.9 0.1 10 44 14 49 5 54 0.85 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_13 - 144 ArgK PF03308.11 267 0.00013 13.5 0.0 1 1 2.2e-06 0.00019 12.9 0.0 28 60 96 128 80 133 0.86 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_22 - 440 TIGR01039 TIGR01039 462 2.4e-57 187.0 0.0 1 1 3.5e-59 3.1e-57 186.7 0.0 2 410 24 424 23 434 0.91 # 15807 # 17126 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 2_16 - 159 DDE_Tnp_IS240 PF13610.1 140 1.1e-08 27.9 0.0 1 1 4.5e-10 1.3e-08 27.6 0.0 23 139 19 137 9 138 0.89 # 15704 # 16180 # -1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.478 3_15 - 252 DDE_Tnp_IS240 PF13610.1 140 2.1e-08 26.9 0.0 1 1 1.1e-09 3.2e-08 26.4 0.0 21 139 110 230 89 231 0.88 # 10026 # 10781 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 3_10 - 162 DDE_Tnp_IS240 PF13610.1 140 2.8e-05 16.9 0.0 1 1 1.1e-06 3.4e-05 16.6 0.0 59 139 51 132 34 133 0.77 # 6758 # 7243 # -1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.537 3_19 - 184 HTH_26 PF13443.1 63 0.00049 13.1 0.2 1 1 1.6e-05 0.0014 11.6 0.2 6 33 154 181 142 183 0.91 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_2 - 389 HTH_17 PF12728.2 51 3.5e-07 23.2 0.0 1 1 7.8e-08 3.4e-06 20.0 0.0 4 30 42 68 39 76 0.85 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_19 - 184 HTH_17 PF12728.2 51 3e-06 20.2 0.7 1 2 0.00011 0.0049 9.9 0.3 26 46 134 154 121 158 0.87 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 HTH_17 PF12728.2 51 3e-06 20.2 0.7 2 2 0.00036 0.016 8.3 0.0 5 23 162 180 159 182 0.88 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_2 - 211 ATP-synt_B PF00430.13 132 5.8e-05 15.7 6.6 1 2 6.6e-07 5.8e-05 15.7 6.6 57 132 33 108 21 108 0.94 # 851 # 1483 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_2 - 211 ATP-synt_B PF00430.13 132 5.8e-05 15.7 6.6 2 2 0.028 2.5 0.7 0.0 93 127 166 200 122 204 0.78 # 851 # 1483 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 3_19 - 184 HTH_11 PF08279.7 55 3.8e-06 19.3 0.5 1 2 0.081 3.6 0.1 0.0 35 45 19 29 9 35 0.82 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 HTH_11 PF08279.7 55 3.8e-06 19.3 0.5 2 2 9.9e-07 4.4e-05 15.9 0.1 9 37 151 180 142 181 0.83 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 HTH_11 PF08279.7 55 0.00025 13.5 0.0 1 1 1.4e-05 0.00061 12.2 0.0 20 37 22 39 7 40 0.87 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 3_19 - 184 TrmB PF01978.14 68 5.7e-06 18.8 0.0 1 1 1.2e-07 1e-05 17.9 0.0 19 44 155 180 149 181 0.88 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_12 - 391 LacI PF00356.16 46 4.9e-05 15.7 0.0 1 1 3.9e-06 0.00034 13.0 0.0 2 34 20 52 19 61 0.91 # 7505 # 8677 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_8 - 88 FtsA PF14450.1 120 0.00011 14.7 0.0 1 1 1.5e-06 0.00013 14.5 0.0 37 91 8 84 2 87 0.86 # 4023 # 4286 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.413 3_13 - 144 AAA_10 PF12846.2 304 0.00022 13.4 0.0 1 1 4.2e-06 0.00037 12.7 0.0 3 35 99 131 98 139 0.87 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_19 - 184 HTH_20 PF12840.2 61 5.8e-05 15.6 0.0 1 2 0.017 1.5 1.5 0.0 33 52 8 27 6 28 0.89 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 3_19 - 184 HTH_20 PF12840.2 61 5.8e-05 15.6 0.0 2 2 4.8e-05 0.0042 9.7 0.0 3 43 110 177 108 181 0.82 # 12176 # 12727 # -1 # ID=3_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.466 1_2 - 211 TIGR01144 TIGR01144 147 6.6e-05 15.3 2.8 1 1 1.5e-06 6.6e-05 15.3 2.8 51 129 31 109 21 127 0.86 # 851 # 1483 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 3_22 - 433 TIGR01144 TIGR01144 147 0.042 6.2 9.9 1 1 0.0016 0.072 5.4 9.3 40 96 239 299 230 317 0.77 # 16186 # 17484 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.433 3_2 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 1 2 2.3e-06 0.0001 14.1 0.0 9 40 115 147 109 154 0.90 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_2 - 389 ArsA_ATPase PF02374.10 305 1.5e-06 20.1 0.0 2 2 0.0044 0.19 3.4 0.0 125 136 233 244 223 252 0.89 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 ArsA_ATPase PF02374.10 305 6.7e-05 14.7 0.0 1 1 2.4e-06 0.0001 14.1 0.0 5 34 101 130 97 133 0.87 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_2 - 389 AAA_31 PF13614.1 157 2.8e-06 20.1 0.1 1 2 1.6e-05 0.0007 12.3 0.0 2 49 108 155 107 178 0.86 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_2 - 389 AAA_31 PF13614.1 157 2.8e-06 20.1 0.1 2 2 0.002 0.086 5.5 0.1 116 151 229 267 217 271 0.79 # 1296 # 2462 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.441 3_13 - 144 AAA_31 PF13614.1 157 0.00021 14.0 0.0 1 1 1.5e-05 0.00067 12.3 0.0 10 36 106 132 85 136 0.93 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 IstB_IS21 PF01695.12 178 2.4e-34 111.0 0.2 1 2 0.014 1.2 1.2 0.2 83 111 4 32 2 33 0.89 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 3_13 - 144 IstB_IS21 PF01695.12 178 2.4e-34 111.0 0.2 2 2 2.9e-35 2.6e-33 107.6 0.0 1 84 51 134 51 141 0.96 # 8677 # 9108 # 1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_44 - 64 BrkDBD PF09607.5 58 8.8e-05 14.8 0.2 1 1 2.9e-06 0.00026 13.3 0.2 3 48 8 50 7 57 0.74 # 34949 # 35140 # 1 # ID=1_44;partial=01;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.505 3_15 - 252 HTH_21 PF13276.1 60 1.6e-11 36.9 5.4 1 1 1.2e-12 3.6e-11 35.7 5.4 3 60 16 71 14 72 0.89 # 10026 # 10781 # -1 # ID=3_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.497 4_1 - 148 HTH_21 PF13276.1 60 1.3e-10 34.0 1.0 1 1 8.3e-12 2.4e-10 33.1 1.0 8 59 45 95 38 97 0.90 # 3 # 446 # -1 # ID=4_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.536 3_21 - 163 HTH_21 PF13276.1 60 3e-08 26.4 1.4 1 1 1.7e-09 5e-08 25.6 1.4 16 59 39 81 26 82 0.87 # 15197 # 15685 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.470 3_16 - 89 Phage_AlpA PF05930.7 51 0.0001 14.7 0.0 1 1 2.5e-06 0.00022 13.7 0.0 5 26 23 44 21 46 0.91 # 10859 # 11125 # -1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.472 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/336b0a7f-60b4-4212-a306-9411f08c2666 # Target file: checkm_output/bins/pm1359/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1359/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/336b0a7f-60b4-4212-a306-9411f08c2666 checkm_output/bins/pm1359/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:41:16 2017 # [ok]