# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_22 - 464 ATP-synt_ab PF00006.20 215 0.00025 13.5 0.0 1 1 9e-06 0.00046 12.6 0.0 15 70 49 105 45 165 0.81 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 ATP-synt_ab PF00006.20 215 0.00056 12.4 0.1 1 1 1.7e-05 0.00087 11.7 0.1 13 50 47 84 42 188 0.72 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_24 - 226 Cons_hypoth95 PF03602.10 183 9.2e-06 18.1 0.0 1 2 0.00022 0.022 7.0 0.0 112 156 18 64 2 82 0.65 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_24 - 226 Cons_hypoth95 PF03602.10 183 9.2e-06 18.1 0.0 2 2 5e-05 0.0051 9.1 0.0 41 62 162 183 145 213 0.80 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 3_21 - 359 KaiC PF06745.8 227 3.6e-05 15.9 0.0 1 1 1.2e-06 6.3e-05 15.1 0.0 13 46 41 78 20 98 0.76 # 17264 # 18340 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 1_22 - 464 KaiC PF06745.8 227 0.00013 14.1 0.0 1 1 5e-06 0.00026 13.1 0.0 19 143 49 188 46 193 0.69 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 3_21 - 359 RecA PF00154.16 323 1.6e-47 155.0 0.0 1 1 2.5e-49 2.6e-47 154.3 0.0 22 281 16 306 9 341 0.80 # 17264 # 18340 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 3_23 - 132 RepC PF06504.6 283 0.00083 11.3 0.0 1 1 8.2e-06 0.00085 11.2 0.0 133 172 28 67 2 96 0.78 # 18609 # 19004 # -1 # ID=3_23;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 6_1 - 306 HTH_IclR PF09339.5 52 1.8e-06 20.4 0.1 1 1 5.2e-08 5.3e-06 19.0 0.1 15 40 14 39 13 40 0.95 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 1175 HHH_3 PF12836.2 65 0.00012 15.0 0.0 1 2 0.015 0.8 2.7 0.0 20 40 794 814 792 817 0.93 # 568 # 4092 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_2 - 1175 HHH_3 PF12836.2 65 0.00012 15.0 0.0 2 2 0.00018 0.0092 8.9 0.0 19 48 900 930 895 932 0.82 # 568 # 4092 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_9 - 341 HHH_3 PF12836.2 65 0.00016 14.6 0.0 1 1 7.7e-06 0.0004 13.3 0.0 14 57 212 255 210 257 0.95 # 12190 # 13212 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.519 2_17 - 213 ABC_tran PF00005.22 137 1.4e-14 47.6 0.1 1 1 1.4e-13 3.7e-12 39.7 0.1 1 134 39 152 39 155 0.83 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_16 - 639 ABC_tran PF00005.22 137 2.5e-07 24.0 3.1 1 2 0.0007 0.018 8.3 0.1 19 32 41 54 40 78 0.87 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_16 - 639 ABC_tran PF00005.22 137 2.5e-07 24.0 3.1 2 2 7.1e-06 0.00018 14.8 0.3 79 126 482 565 288 569 0.80 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 8_1 - 185 ABC_tran PF00005.22 137 8e-05 15.9 0.3 1 1 3.1e-05 0.00079 12.7 0.0 8 30 24 46 18 58 0.86 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 1_22 - 464 ABC_tran PF00005.22 137 0.00047 13.4 0.0 1 1 4.5e-05 0.0012 12.2 0.0 9 52 47 104 38 198 0.52 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 6_1 - 306 HTH_22 PF13309.1 64 0.00058 12.6 0.0 1 1 1.2e-05 0.0012 11.6 0.0 46 64 21 39 10 39 0.89 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_24 - 226 TIGR00095 TIGR00095 194 0.00029 13.2 0.0 1 2 0.001 0.11 4.8 0.0 123 138 19 34 7 79 0.75 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_24 - 226 TIGR00095 TIGR00095 194 0.00029 13.2 0.0 2 2 0.00032 0.033 6.4 0.0 53 83 164 196 154 209 0.76 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_22 - 464 DUF815 PF05673.8 250 5.1e-06 18.5 0.0 1 1 1.9e-07 9.8e-06 17.6 0.0 44 103 40 99 25 106 0.89 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 DUF815 PF05673.8 250 1.1e-05 17.4 0.0 1 1 3.3e-07 1.7e-05 16.8 0.0 32 103 30 99 7 106 0.83 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_1 - 306 HTH_AsnC-type PF13404.1 42 0.0005 12.6 0.0 1 1 1.3e-05 0.0013 11.2 0.0 18 36 18 36 15 40 0.91 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_9 - 341 HHH_5 PF14520.1 60 0.00015 14.9 0.0 1 1 4.5e-06 0.00046 13.3 0.0 6 49 213 253 210 257 0.91 # 12190 # 13212 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.519 6_1 - 306 rve_3 PF13683.1 67 0.00034 13.1 0.1 1 1 1.3e-05 0.0014 11.2 0.0 6 65 220 287 215 288 0.88 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 8_1 - 185 Sigma54_activat PF00158.21 168 5.9e-05 15.5 0.1 1 1 1.2e-05 0.00041 12.8 0.1 18 55 23 60 7 123 0.70 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 1_22 - 464 Sigma54_activat PF00158.21 168 7.3e-05 15.2 0.0 1 1 4.1e-06 0.00014 14.3 0.0 11 67 37 96 33 100 0.79 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 Sigma54_activat PF00158.21 168 0.00014 14.4 0.1 1 2 2.9e-05 0.00098 11.6 0.0 16 51 43 78 30 96 0.78 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 Sigma54_activat PF00158.21 168 0.00014 14.4 0.1 2 2 0.078 2.7 0.4 0.1 131 150 174 194 155 208 0.67 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 FtsK_SpoIIIE PF01580.13 205 0.00023 13.6 0.0 1 2 7.9e-06 0.00081 11.8 0.0 20 58 30 69 17 73 0.81 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 FtsK_SpoIIIE PF01580.13 205 0.00023 13.6 0.0 2 2 0.057 5.9 -0.8 0.0 175 200 159 184 90 197 0.72 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_1 - 306 HTH_40 PF14493.1 91 0.00016 14.9 0.0 1 1 3.2e-06 0.00033 13.8 0.0 4 35 8 39 5 70 0.91 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_20 - 520 Helicase_C PF00271.26 78 4.9e-14 45.0 0.0 1 1 1.5e-15 1.5e-13 43.4 0.0 2 78 387 463 386 463 0.97 # 13393 # 14952 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 6_1 - 306 HTH_38 PF13936.1 44 1.1e-11 37.2 0.5 1 1 4.4e-13 4.6e-11 35.1 0.2 6 41 3 38 2 40 0.94 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 3_4 - 277 TIGR01932 TIGR01932 318 1.3e-09 29.9 1.8 1 1 1.7e-11 1.8e-09 29.5 1.8 145 268 116 240 86 245 0.84 # 3155 # 3985 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 3_4 - 277 TIGR01933 TIGR01933 261 1.6e-05 17.1 1.8 1 1 2e-07 2.1e-05 16.7 1.8 81 201 111 234 82 251 0.80 # 3155 # 3985 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_17 - 213 MobB PF03205.9 140 3.6e-06 19.7 0.0 1 1 1.6e-07 8.4e-06 18.5 0.0 2 37 51 86 50 102 0.89 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 464 MobB PF03205.9 140 0.00074 12.2 0.0 1 1 3.1e-05 0.0016 11.1 0.0 3 41 52 88 50 98 0.88 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 6_1 - 306 TetR_N PF00440.18 47 0.00059 12.5 0.1 1 1 1.5e-05 0.0015 11.1 0.0 16 36 17 37 16 43 0.86 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 8_1 - 185 AAA_19 PF13245.1 76 0.00025 13.8 0.0 1 1 1.2e-05 0.00059 12.6 0.0 10 37 28 54 21 85 0.81 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 2_12 - 419 AAA_19 PF13245.1 76 0.00075 12.2 0.0 1 1 3e-05 0.0015 11.2 0.0 22 58 36 70 20 94 0.79 # 7812 # 9068 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_19 - 412 CbiA PF01656.18 195 4.6e-23 74.6 0.0 1 1 8.2e-25 8.5e-23 73.7 0.0 1 158 122 329 122 361 0.69 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 2_17 - 213 PRK PF00485.13 194 3.9e-05 16.2 0.0 1 1 6.8e-07 7e-05 15.4 0.0 1 37 51 87 51 106 0.79 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 KTI12 PF08433.5 270 4.7e-07 22.2 0.1 1 2 1e-07 1.1e-05 17.7 0.0 4 41 52 89 50 103 0.89 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 KTI12 PF08433.5 270 4.7e-07 22.2 0.1 2 2 0.0043 0.44 2.6 0.0 187 218 149 180 136 209 0.65 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_24 - 226 MethyltransfD12 PF02086.10 260 0.00025 13.5 0.0 1 2 0.012 1.3 1.3 0.0 176 188 19 31 12 91 0.83 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_24 - 226 MethyltransfD12 PF02086.10 260 0.00025 13.5 0.0 2 2 2.8e-05 0.0029 10.0 0.0 20 46 163 189 148 197 0.79 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 6_1 - 306 Sigma70_r4_2 PF08281.7 54 7.4e-08 24.8 0.0 1 1 1.6e-09 1.7e-07 23.6 0.0 25 48 16 39 12 40 0.94 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 3_11 - 355 Rep_3 PF01051.16 222 7.2e-40 129.8 0.1 1 1 9.8e-42 1e-39 129.4 0.1 3 222 27 285 25 285 0.95 # 6580 # 7644 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.515 6_1 - 306 rve PF00665.21 120 1.2e-22 73.3 0.0 1 1 2.2e-24 2.3e-22 72.3 0.0 3 118 118 242 117 244 0.96 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 8_1 - 185 AFG1_ATPase PF03969.11 362 4e-05 15.4 0.1 1 1 1.6e-06 0.00016 13.4 0.1 65 216 30 179 7 184 0.75 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 6_1 - 306 Terminase_5 PF06056.7 58 0.00052 12.5 0.0 1 1 1.2e-05 0.0012 11.3 0.0 9 36 13 40 9 44 0.85 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 3_16 - 639 AAA_23 PF13476.1 202 6.4e-19 62.0 0.0 1 1 7e-20 7.2e-18 58.5 0.0 1 177 5 242 5 481 0.77 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_22 - 464 AAA_24 PF13479.1 213 5.6e-06 19.0 0.1 1 1 3.1e-07 1.6e-05 17.5 0.1 6 33 52 87 49 172 0.80 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 8_1 - 185 AAA_24 PF13479.1 213 0.00062 12.3 0.1 1 1 4.5e-05 0.0023 10.4 0.0 3 21 27 45 25 52 0.84 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 1_24 - 226 Methyltransf_26 PF13659.1 117 1.7e-13 43.6 0.1 1 2 9.7e-09 1e-06 21.8 0.0 53 114 3 71 2 74 0.79 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_24 - 226 Methyltransf_26 PF13659.1 117 1.7e-13 43.6 0.1 2 2 4e-08 4.2e-06 19.8 0.0 4 44 167 206 164 220 0.83 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 2_17 - 213 Zeta_toxin PF06414.7 201 7.4e-06 18.1 0.0 1 2 2.2e-07 2.2e-05 16.5 0.0 14 52 47 85 37 106 0.80 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 Zeta_toxin PF06414.7 201 7.4e-06 18.1 0.0 2 2 0.062 6.3 -1.3 0.0 170 185 155 170 122 201 0.61 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 464 AAA_30 PF13604.1 196 3.1e-05 16.5 0.0 1 1 2.6e-06 0.00013 14.5 0.0 4 53 35 84 34 181 0.65 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 AAA_30 PF13604.1 196 4.9e-05 15.9 0.8 1 1 3.9e-06 0.0002 13.9 0.7 17 50 48 81 42 183 0.83 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_16 - 639 SMC_N PF02463.14 220 3.8e-15 48.6 0.4 1 1 1.3e-16 6.6e-15 47.8 0.4 32 200 41 618 3 635 0.91 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_17 - 213 SMC_N PF02463.14 220 3e-05 16.3 0.6 1 2 0.00081 0.042 6.0 0.1 25 41 50 66 37 73 0.81 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 SMC_N PF02463.14 220 3e-05 16.3 0.6 2 2 9.8e-05 0.005 9.0 0.0 135 204 117 192 67 208 0.64 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_1 - 306 GerE PF00196.14 58 1.6e-06 20.3 0.0 1 1 3.1e-08 3.2e-06 19.4 0.0 17 39 16 38 8 40 0.89 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 8_1 - 185 Bac_DnaA PF00308.13 219 6e-10 32.0 0.0 1 1 1.5e-11 7.9e-10 31.6 0.0 37 136 30 127 2 132 0.87 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 1_22 - 464 Bac_DnaA PF00308.13 219 2e-05 17.2 0.0 1 2 1.4e-05 0.00075 12.1 0.0 37 82 52 97 40 113 0.75 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 464 Bac_DnaA PF00308.13 219 2e-05 17.2 0.0 2 2 0.012 0.64 2.5 0.0 79 131 141 193 118 260 0.68 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_19 - 412 MipZ PF09140.6 261 6.2e-06 18.4 0.4 1 2 3.3e-05 0.0034 9.4 0.1 1 50 120 174 120 200 0.75 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_19 - 412 MipZ PF09140.6 261 6.2e-06 18.4 0.4 2 2 0.00022 0.023 6.7 0.0 90 135 247 292 237 297 0.89 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_24 - 226 UPF0020 PF01170.13 180 3.7e-06 19.5 0.0 1 2 0.00018 0.018 7.5 0.0 102 117 16 31 3 88 0.74 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_24 - 226 UPF0020 PF01170.13 180 3.7e-06 19.5 0.0 2 2 2.9e-05 0.003 10.1 0.0 27 54 162 188 158 216 0.72 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_8 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00018 14.0 0.1 1 3 0.056 5.7 -0.7 0.1 125 187 93 150 78 163 0.64 # 10513 # 11721 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_8 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00018 14.0 0.1 2 3 0.00052 0.053 6.0 0.0 31 82 201 251 192 266 0.85 # 10513 # 11721 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_8 - 403 DDE_Tnp_ISL3 PF01610.12 249 0.00018 14.0 0.1 3 3 0.0016 0.17 4.3 0.1 161 232 277 348 251 355 0.59 # 10513 # 11721 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 3_16 - 639 AAA_21 PF13304.1 303 2.6e-05 17.2 0.0 1 2 0.00046 0.048 6.5 0.0 8 22 42 56 41 97 0.88 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_16 - 639 AAA_21 PF13304.1 303 2.6e-05 17.2 0.0 2 2 0.00011 0.011 8.5 0.0 204 297 539 615 441 616 0.82 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 6_1 - 306 Sigma70_r4 PF04545.11 50 0.00034 12.9 0.2 1 1 1.8e-05 0.0018 10.6 0.1 19 39 16 36 9 39 0.88 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 4_10 - 1522 RRF PF01765.14 165 0.029 6.8 13.0 1 2 0.0044 0.46 2.9 0.0 98 151 266 319 261 323 0.94 # 11892 # 16457 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 4_10 - 1522 RRF PF01765.14 165 0.029 6.8 13.0 2 2 4.9e-05 0.0051 9.2 2.2 108 152 744 789 719 800 0.71 # 11892 # 16457 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.567 6_1 - 306 DUF2316 PF10078.4 89 0.00044 13.2 0.0 1 1 9.2e-06 0.00095 12.1 0.0 20 82 14 85 5 91 0.82 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_22 - 464 AAA PF00004.24 132 3e-08 26.9 0.0 1 1 2.3e-09 1.2e-07 25.0 0.0 2 114 53 208 52 226 0.67 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 8_1 - 185 AAA PF00004.24 132 9.8e-08 25.2 0.0 1 1 2.8e-09 1.4e-07 24.7 0.0 1 74 30 105 30 140 0.76 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 6_1 - 306 KorB PF08535.5 93 0.00056 13.1 0.0 1 1 2.4e-05 0.0025 11.0 0.0 2 30 16 44 15 108 0.77 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_14 - 89 LexA_DNA_bind PF01726.11 65 0.00061 12.3 0.2 1 1 2.1e-05 0.0022 10.6 0.2 3 64 2 63 1 64 0.84 # 9908 # 10174 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.528 1_24 - 226 N6_N4_Mtase PF01555.13 231 3.6e-37 121.0 0.0 1 1 3.7e-37 3.8e-35 114.3 0.0 1 228 21 200 21 203 0.91 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 2_17 - 213 cobW PF02492.14 178 0.00042 12.7 0.1 1 1 6.9e-06 0.00071 12.0 0.1 2 47 51 95 50 114 0.77 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 464 AAA_16 PF13191.1 185 3.9e-17 55.8 0.0 1 1 2.6e-18 6.7e-17 55.0 0.0 1 179 30 190 30 198 0.80 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 AAA_16 PF13191.1 185 1.9e-08 27.4 0.0 1 1 1e-09 2.6e-08 27.0 0.0 12 87 38 107 29 182 0.76 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 8_1 - 185 AAA_16 PF13191.1 185 5.1e-05 16.2 0.2 1 1 8.3e-06 0.00021 14.2 0.1 21 41 24 44 12 63 0.77 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 9_2 - 116 AAA_16 PF13191.1 185 0.00029 13.8 1.4 1 2 0.04 1 2.2 0.4 114 142 17 47 3 97 0.54 # 231 # 578 # 1 # ID=9_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 9_2 - 116 AAA_16 PF13191.1 185 0.00029 13.8 1.4 2 2 6.4e-05 0.0017 11.3 0.1 12 38 93 116 86 116 0.71 # 231 # 578 # 1 # ID=9_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_22 - 464 AAA_22 PF13401.1 131 5.8e-09 29.1 0.1 1 1 6e-10 2.1e-08 27.4 0.1 5 123 50 201 46 209 0.74 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 AAA_22 PF13401.1 131 2.7e-07 23.7 0.0 1 1 2e-08 6.8e-07 22.5 0.0 3 86 48 176 42 195 0.73 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 8_1 - 185 AAA_22 PF13401.1 131 9.3e-07 22.0 0.1 1 1 9e-06 0.00031 13.9 0.1 6 28 29 51 24 130 0.59 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 8_1 - 185 TIGR00362 TIGR00362 437 4.5e-11 35.0 0.0 1 1 1.1e-12 5.9e-11 34.6 0.0 140 240 30 128 17 135 0.91 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 1_22 - 464 TIGR00362 TIGR00362 437 0.00063 11.4 0.0 1 1 3e-05 0.0015 10.2 0.0 140 165 52 77 39 106 0.80 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 6_1 - 306 NUMOD1 PF07453.8 37 0.00025 13.9 0.1 1 1 4.3e-06 0.00044 13.1 0.1 20 37 21 38 19 38 0.91 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_17 - 213 AAA_29 PF13555.1 62 8.8e-08 24.6 0.0 1 1 6.2e-09 2.1e-07 23.4 0.0 8 40 35 66 32 71 0.91 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_16 - 639 AAA_29 PF13555.1 62 7.9e-05 15.1 0.1 1 1 1.4e-05 0.00049 12.6 0.0 31 51 41 61 4 66 0.81 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 8_1 - 185 AAA_29 PF13555.1 62 0.00046 12.7 0.0 1 1 2.5e-05 0.00085 11.8 0.0 18 59 22 64 14 66 0.72 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 8_1 - 185 AAA_28 PF13521.1 163 0.0006 12.7 0.2 1 1 1.7e-05 0.0018 11.2 0.2 1 43 29 76 29 93 0.69 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 6_1 - 306 HTH_32 PF13565.1 77 0.0019 12.0 1.7 1 3 0.00075 0.078 6.8 0.0 43 77 12 38 5 38 0.79 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 6_1 - 306 HTH_32 PF13565.1 77 0.0019 12.0 1.7 2 3 0.0046 0.48 4.3 0.3 4 61 32 88 30 98 0.66 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 6_1 - 306 HTH_32 PF13565.1 77 0.0019 12.0 1.7 3 3 0.035 3.6 1.5 0.0 9 37 264 297 261 303 0.61 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 6_1 - 306 HTH_3 PF01381.17 55 8.2e-07 21.8 0.1 1 1 3e-08 1.6e-06 20.9 0.1 7 37 15 45 8 48 0.91 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_16 - 207 HTH_3 PF01381.17 55 0.00014 14.7 2.2 1 1 3.3e-06 0.00017 14.4 0.1 1 28 172 199 172 202 0.93 # 19649 # 20269 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 6_1 - 306 HTH_23 PF13384.1 50 6.8e-09 28.2 0.0 1 1 6.6e-10 2.3e-08 26.5 0.0 9 40 9 40 2 43 0.90 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_16 - 207 HTH_23 PF13384.1 50 9.2e-06 18.2 0.3 1 1 6.6e-07 2.3e-05 17.0 0.3 10 40 174 203 162 206 0.76 # 19649 # 20269 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 1_30 - 670 HTH_23 PF13384.1 50 0.00049 12.8 0.0 1 1 7.7e-05 0.0027 10.4 0.0 13 40 150 177 144 183 0.89 # 30218 # 32227 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_19 - 412 Fer4_NifH PF00142.13 273 6.5e-06 18.4 0.0 1 1 1.2e-07 1.2e-05 17.5 0.0 7 71 127 196 122 205 0.79 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 6_1 - 306 HTH_7 PF02796.10 45 2.2e-11 36.5 0.3 1 1 5.8e-13 6e-11 35.1 0.3 13 44 9 40 5 41 0.93 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 6_1 - 306 HTH_19 PF12844.2 64 1.3e-05 18.2 0.0 1 1 4.5e-07 2.3e-05 17.4 0.0 7 52 12 58 11 70 0.82 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_6 - 129 HTH_19 PF12844.2 64 9e-05 15.5 0.0 1 1 3.1e-06 0.00016 14.7 0.0 14 62 27 76 21 78 0.91 # 8556 # 8942 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_22 - 464 NB-ARC PF00931.17 287 0.00041 12.2 0.0 1 1 8.9e-06 0.00091 11.0 0.0 20 160 50 226 34 287 0.66 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 6_1 - 306 HTH_29 PF13551.1 112 2.2e-06 20.8 0.1 1 1 8.1e-08 8.4e-06 18.9 0.1 6 35 12 40 8 93 0.74 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 5_5 - 174 TIGR00593 TIGR00593 890 6e-19 60.4 0.0 1 1 1.3e-20 6.5e-19 60.3 0.0 3 164 5 168 3 173 0.82 # 2904 # 3425 # 1 # ID=5_5;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.529 3_23 - 132 TIGR00593 TIGR00593 890 2.7e-12 38.4 0.0 1 1 5.6e-14 2.9e-12 38.3 0.0 180 269 2 95 1 124 0.75 # 18609 # 19004 # -1 # ID=3_23;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.510 1_22 - 464 Arch_ATPase PF01637.13 234 1.4e-12 40.7 0.0 1 1 5.8e-14 2e-12 40.2 0.0 1 230 31 266 31 270 0.63 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 Arch_ATPase PF01637.13 234 0.00026 13.7 0.0 1 1 9.1e-06 0.00031 13.4 0.0 18 68 47 97 41 177 0.84 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 8_1 - 185 Arch_ATPase PF01637.13 234 0.00047 12.8 0.1 1 1 6.1e-05 0.0021 10.7 0.0 8 37 15 44 12 65 0.79 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 8_1 - 185 PhoH PF02562.11 205 9.1e-08 24.5 0.0 1 1 4.7e-09 2.4e-07 23.1 0.0 11 48 19 56 9 67 0.80 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 2_12 - 419 PhoH PF02562.11 205 0.00031 12.9 0.0 1 2 5.5e-05 0.0028 9.8 0.0 31 138 36 136 12 146 0.65 # 7812 # 9068 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_12 - 419 PhoH PF02562.11 205 0.00031 12.9 0.0 2 2 0.078 4 -0.5 0.0 65 106 351 392 340 396 0.78 # 7812 # 9068 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_3 - 412 AAA_5 PF07728.9 139 1.3e-17 56.8 0.0 1 1 6.7e-19 2.3e-17 56.0 0.0 4 126 173 293 172 309 0.92 # 4273 # 5508 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.527 1_22 - 464 AAA_5 PF07728.9 139 3.6e-06 19.7 0.0 1 1 9.3e-07 3.2e-05 16.6 0.0 1 47 51 100 51 194 0.73 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 8_1 - 185 AAA_5 PF07728.9 139 1.4e-05 17.8 0.3 1 2 5.8e-06 0.0002 14.1 0.2 1 74 29 98 29 105 0.73 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 8_1 - 185 AAA_5 PF07728.9 139 1.4e-05 17.8 0.3 2 2 0.091 3.1 0.5 0.0 89 123 149 183 142 184 0.64 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 2_20 - 520 ResIII PF04851.10 184 8.8e-18 57.7 0.0 1 1 3.2e-19 1.6e-17 56.8 0.0 26 183 112 268 97 269 0.82 # 13393 # 14952 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 8_1 - 185 ResIII PF04851.10 184 0.00019 14.3 0.0 1 2 0.00011 0.0057 9.4 0.0 8 50 14 52 9 60 0.71 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 8_1 - 185 ResIII PF04851.10 184 0.00019 14.3 0.0 2 2 0.0078 0.4 3.4 0.0 112 163 56 106 50 129 0.72 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 2_20 - 520 SNF2_N PF00176.18 299 2.2e-05 16.3 0.0 1 1 3.5e-07 3.6e-05 15.6 0.0 106 182 186 277 169 285 0.81 # 13393 # 14952 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 2_17 - 213 AAA_18 PF13238.1 129 2.1e-06 21.1 0.0 1 1 3.6e-08 3.7e-06 20.2 0.0 1 39 52 90 52 106 0.77 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 464 AAA_32 PF13654.1 509 0.00025 12.7 0.0 1 1 4.1e-06 0.00043 11.9 0.0 8 56 29 75 23 82 0.82 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_24 - 226 Methyltransf_15 PF09445.5 164 0.0011 11.5 0.1 1 2 0.034 3.5 0.1 0.0 53 79 4 29 2 34 0.90 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_24 - 226 Methyltransf_15 PF09445.5 164 0.0011 11.5 0.1 2 2 7.1e-05 0.0073 8.8 0.0 3 31 166 194 164 207 0.86 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 8_1 - 185 DUF258 PF03193.11 161 1e-05 17.7 0.0 1 1 3.7e-07 1.3e-05 17.4 0.0 22 78 14 82 1 120 0.73 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 2_17 - 213 DUF258 PF03193.11 161 1.1e-05 17.6 0.0 1 1 5.7e-07 1.9e-05 16.8 0.0 25 85 38 111 13 119 0.76 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 9_2 - 116 DUF258 PF03193.11 161 0.00012 14.3 0.0 1 1 4.9e-06 0.00017 13.8 0.0 21 49 88 116 69 116 0.75 # 231 # 578 # 1 # ID=9_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_22 - 464 AAA_35 PF14516.1 331 8.8e-08 24.0 0.0 1 2 7.5e-06 0.00078 11.0 0.0 22 141 40 174 31 192 0.63 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 464 AAA_35 PF14516.1 331 8.8e-08 24.0 0.0 2 2 1.7e-05 0.0017 9.9 0.0 214 292 245 346 230 358 0.84 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 6_1 - 306 HTH_28 PF13518.1 52 4e-08 26.1 0.1 1 1 2.1e-09 1.1e-07 24.8 0.1 7 34 12 39 8 40 0.89 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_16 - 207 HTH_28 PF13518.1 52 2.8e-05 17.1 0.1 1 1 1.4e-06 7.3e-05 15.7 0.1 8 37 176 205 167 206 0.88 # 19649 # 20269 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 1_20 - 324 Ribosomal_S18 PF01084.15 54 0.0068 9.3 5.1 1 3 0.061 6.3 -0.2 0.0 26 46 62 82 58 85 0.87 # 22526 # 23497 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_20 - 324 Ribosomal_S18 PF01084.15 54 0.0068 9.3 5.1 2 3 0.0021 0.22 4.5 0.1 39 53 132 146 127 147 0.91 # 22526 # 23497 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 1_20 - 324 Ribosomal_S18 PF01084.15 54 0.0068 9.3 5.1 3 3 0.002 0.2 4.6 0.0 32 47 298 313 295 313 0.90 # 22526 # 23497 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.448 6_1 - 306 HTH_24 PF13412.1 48 3.9e-07 22.4 0.1 1 1 6.7e-09 6.9e-07 21.6 0.1 10 40 11 40 10 43 0.89 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_17 - 213 Sigma54_activ_2 PF14532.1 138 1.5e-05 18.0 0.0 1 1 2.3e-07 2.4e-05 17.4 0.0 10 95 38 143 33 192 0.72 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_1 - 306 HTH_30 PF13556.1 59 7.7e-05 15.2 0.0 1 1 1.7e-06 0.00017 14.1 0.0 10 34 15 39 10 43 0.86 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_24 - 226 TIGR03534 TIGR03534 253 0.0009 11.3 0.0 1 1 4.9e-05 0.005 8.9 0.0 141 237 3 90 2 96 0.67 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 2_12 - 419 Terminase_GpA PF05876.7 557 2.8e-05 15.5 0.0 1 1 4.5e-07 4.6e-05 14.8 0.0 34 149 25 132 10 136 0.78 # 7812 # 9068 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 6_1 - 306 HTH_10 PF04967.7 53 0.0002 13.9 0.0 1 1 3.8e-06 0.00039 13.0 0.0 24 45 18 39 15 43 0.89 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 3_21 - 359 Rad51 PF08423.6 256 4.3e-05 15.4 0.0 1 2 5.7e-06 0.00058 11.7 0.0 32 84 45 91 27 135 0.86 # 17264 # 18340 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 3_21 - 359 Rad51 PF08423.6 256 4.3e-05 15.4 0.0 2 2 0.0078 0.8 1.4 0.0 169 207 195 230 161 262 0.78 # 17264 # 18340 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 2_20 - 520 DEAD PF00270.24 169 1.7e-13 43.3 0.1 1 2 3.1e-13 1.1e-11 37.5 0.0 2 163 99 268 98 275 0.73 # 13393 # 14952 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 2_20 - 520 DEAD PF00270.24 169 1.7e-13 43.3 0.1 2 2 0.014 0.49 2.8 0.0 64 102 384 425 376 428 0.75 # 13393 # 14952 # 1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.514 1_22 - 464 DEAD PF00270.24 169 2.7e-06 19.9 0.1 1 1 2.7e-07 9.3e-06 18.2 0.1 2 157 35 198 34 201 0.65 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_12 - 419 DEAD PF00270.24 169 0.00022 13.7 0.0 1 1 2.2e-05 0.00077 11.9 0.0 25 132 35 130 14 154 0.76 # 7812 # 9068 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_22 - 464 Miro PF08477.8 119 8.3e-05 16.1 0.2 1 1 2.5e-06 0.00026 14.5 0.1 1 26 51 87 51 181 0.59 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_16 - 207 HTH_31 PF13560.1 64 1.1e-05 18.6 0.5 1 1 3.2e-07 1.1e-05 18.6 0.5 5 38 171 204 170 206 0.92 # 19649 # 20269 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 6_1 - 306 HTH_31 PF13560.1 64 2.3e-05 17.5 0.0 1 1 1.8e-06 6e-05 16.2 0.0 12 54 15 60 13 61 0.85 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_6 - 129 HTH_31 PF13560.1 64 0.00019 14.6 0.0 1 1 1.1e-05 0.00039 13.6 0.0 16 59 27 70 25 81 0.89 # 8556 # 8942 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.496 1_22 - 464 DUF2075 PF09848.4 352 3e-05 16.0 0.0 1 1 1.7e-06 8.7e-05 14.5 0.0 3 133 51 208 49 245 0.67 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 DUF2075 PF09848.4 352 6.3e-05 15.0 0.2 1 1 3e-06 0.00015 13.7 0.0 3 28 51 76 49 109 0.80 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_12 - 419 Terminase_6 PF03237.10 384 1.2e-20 66.5 0.0 1 1 1.3e-22 1.4e-20 66.3 0.0 4 382 31 403 28 405 0.89 # 7812 # 9068 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_17 - 213 T2SE PF00437.15 272 0.00017 13.5 0.1 1 1 2.9e-06 0.0003 12.7 0.1 116 164 37 85 4 109 0.79 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_16 - 207 HTH_6 PF01418.12 77 0.00014 14.6 0.0 1 1 3e-06 0.00031 13.5 0.0 34 57 180 203 170 205 0.88 # 19649 # 20269 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 1_19 - 412 Methyltransf_24 PF13578.1 106 0.00028 14.7 0.1 1 1 1.9e-05 0.002 12.0 0.1 4 79 130 265 127 281 0.63 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_22 - 464 NACHT PF05729.7 166 1.2e-05 18.0 0.0 1 2 1.3e-05 0.00044 12.9 0.0 1 28 50 77 50 103 0.88 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 464 NACHT PF05729.7 166 1.2e-05 18.0 0.0 2 2 0.017 0.57 2.8 0.0 79 112 158 188 123 220 0.79 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 NACHT PF05729.7 166 2.5e-05 16.9 0.0 1 1 1.7e-06 5.7e-05 15.8 0.0 2 38 51 88 50 112 0.79 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 8_1 - 185 NACHT PF05729.7 166 0.0008 12.0 0.3 1 2 7.9e-05 0.0027 10.3 0.3 3 28 30 55 28 126 0.69 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 8_1 - 185 NACHT PF05729.7 166 0.0008 12.0 0.3 2 2 0.073 2.5 0.7 0.0 84 124 92 126 60 164 0.73 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 2_17 - 213 UPF0079 PF02367.12 123 3.4e-06 19.7 0.0 1 1 6.3e-08 6.5e-06 18.8 0.0 9 47 43 82 36 96 0.85 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 AAA_17 PF13207.1 121 5.4e-07 23.4 0.0 1 1 8.1e-09 8.3e-07 22.8 0.0 1 33 51 86 51 178 0.81 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_8 - 403 Transposase_mut PF00872.13 381 5.3e-121 396.6 0.1 1 1 5.8e-123 6e-121 396.4 0.1 9 379 10 377 1 379 0.97 # 10513 # 11721 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 2_17 - 213 TIGR02211 TIGR02211 221 3.1e-16 52.2 0.3 1 2 2e-09 1e-07 24.3 0.0 15 51 33 69 18 91 0.89 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 TIGR02211 TIGR02211 221 3.1e-16 52.2 0.3 2 2 4.8e-10 2.5e-08 26.3 0.1 119 215 102 200 92 204 0.86 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_16 - 639 TIGR02211 TIGR02211 221 0.0004 12.6 0.2 1 1 4.7e-05 0.0024 10.0 0.0 139 217 545 633 518 636 0.79 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_21 - 359 AAA_25 PF13481.1 194 4.1e-07 22.5 0.0 1 1 9.3e-08 1.9e-06 20.3 0.0 13 157 27 157 18 216 0.68 # 17264 # 18340 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 8_1 - 185 AAA_25 PF13481.1 194 1.9e-05 17.1 0.0 1 1 1.6e-06 3.3e-05 16.3 0.0 28 58 22 52 5 97 0.79 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 3_16 - 639 AAA_25 PF13481.1 194 5.9e-05 15.5 0.3 1 1 1.6e-05 0.00032 13.1 0.0 39 139 39 137 29 143 0.71 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 2_17 - 213 AAA_25 PF13481.1 194 0.0002 13.8 0.1 1 2 0.00013 0.0026 10.1 0.0 18 50 30 66 15 88 0.76 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 AAA_25 PF13481.1 194 0.0002 13.8 0.1 2 2 0.058 1.2 1.4 0.1 165 185 162 182 144 186 0.80 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 464 AAA_25 PF13481.1 194 0.00066 12.0 0.1 1 1 0.00017 0.0035 9.7 0.1 31 59 47 74 24 188 0.73 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 AAA_15 PF13175.1 415 6.2e-05 15.1 0.0 1 1 7.1e-07 7.4e-05 14.8 0.0 14 56 41 97 10 143 0.79 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 464 RuvB_N PF05496.7 234 7.2e-05 14.8 0.0 1 2 4.3e-05 0.0022 10.0 0.0 51 75 50 74 32 104 0.85 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 464 RuvB_N PF05496.7 234 7.2e-05 14.8 0.0 2 2 0.018 0.95 1.3 0.0 33 61 305 333 293 366 0.78 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 8_1 - 185 RuvB_N PF05496.7 234 0.00021 13.3 0.0 1 1 6.2e-06 0.00032 12.7 0.0 50 119 27 107 18 116 0.66 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 1_22 - 464 AAA_14 PF13173.1 128 1.4e-07 24.4 0.0 1 2 7.3e-06 0.00025 13.9 0.0 3 48 50 96 48 117 0.75 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 464 AAA_14 PF13173.1 128 1.4e-07 24.4 0.0 2 2 0.00049 0.017 8.0 0.0 50 97 150 202 127 222 0.80 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 8_1 - 185 AAA_14 PF13173.1 128 6.6e-07 22.3 0.0 1 1 2.3e-08 8e-07 22.0 0.0 2 96 27 128 26 173 0.72 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 2_17 - 213 AAA_14 PF13173.1 128 0.00045 13.1 0.0 1 1 3.4e-05 0.0012 11.7 0.0 2 44 49 90 48 122 0.74 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_19 - 412 VirC1 PF07015.6 231 0.00075 11.5 0.0 1 2 0.015 1.6 0.7 0.0 4 26 122 144 120 151 0.83 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_19 - 412 VirC1 PF07015.6 231 0.00075 11.5 0.0 2 2 8.4e-05 0.0087 8.1 0.0 84 154 256 332 243 370 0.69 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_9 - 341 Transposase_20 PF02371.11 87 1.7e-30 98.0 0.2 1 1 3.2e-32 3.3e-30 97.1 0.2 2 80 212 291 211 298 0.92 # 12190 # 13212 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.519 6_1 - 306 HTH_Tnp_ISL3 PF13542.1 52 1.7e-05 16.9 0.1 1 1 1.3e-06 6.9e-05 15.0 0.0 21 49 11 39 2 40 0.82 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_16 - 207 HTH_Tnp_ISL3 PF13542.1 52 0.00031 12.9 0.1 1 1 1.6e-05 0.00081 11.6 0.1 22 48 176 201 174 204 0.83 # 19649 # 20269 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 2_21 - 93 GrpE PF01025.14 166 0.00071 12.1 3.3 1 1 7.9e-06 0.00081 11.9 3.3 34 108 12 90 2 92 0.77 # 14955 # 15233 # 1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.459 2_17 - 213 AAA_33 PF13671.1 143 0.00026 13.8 0.1 1 1 4.3e-06 0.00044 13.1 0.1 1 33 51 94 51 208 0.70 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_1 - 306 CENP-B_N PF04218.8 53 6.1e-05 15.4 0.1 1 1 1.1e-06 0.00012 14.5 0.1 20 47 15 42 2 43 0.83 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_17 - 213 ArgK PF03308.11 267 1.6e-05 16.7 0.0 1 1 2.7e-07 2.8e-05 15.9 0.0 26 63 46 83 15 85 0.87 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 3_16 - 639 SbcCD_C PF13558.1 90 1.1e-07 24.7 0.1 1 1 2.6e-09 2.6e-07 23.5 0.1 12 89 532 601 524 602 0.86 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 1_2 - 1175 HHH_6 PF14579.1 90 1.9e-16 52.9 0.0 1 1 6.7e-18 6.9e-16 51.1 0.0 1 84 866 958 866 961 0.93 # 568 # 4092 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.544 1_22 - 464 RNA_helicase PF00910.17 107 4.2e-05 16.7 0.0 1 2 5e-05 0.0026 10.9 0.0 1 26 52 76 52 106 0.80 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 464 RNA_helicase PF00910.17 107 4.2e-05 16.7 0.0 2 2 0.016 0.81 2.9 0.0 45 65 156 176 137 195 0.82 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 RNA_helicase PF00910.17 107 7.5e-05 15.9 0.1 1 1 8.1e-06 0.00042 13.5 0.1 1 26 52 77 52 107 0.76 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 464 AAA_2 PF07724.9 171 0.00022 14.1 0.0 1 1 1.1e-05 0.0011 11.9 0.0 7 83 53 175 48 193 0.84 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 APS_kinase PF01583.15 157 2.7e-07 23.3 0.0 1 1 5.1e-09 5.3e-07 22.4 0.0 1 40 48 87 48 105 0.84 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 1_22 - 464 NTPase_1 PF03266.10 168 1.6e-05 17.6 0.1 1 2 0.00011 0.0038 9.9 0.0 1 26 51 76 51 84 0.91 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_22 - 464 NTPase_1 PF03266.10 168 1.6e-05 17.6 0.1 2 2 0.0027 0.093 5.4 0.0 62 103 129 168 114 197 0.82 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 2_17 - 213 NTPase_1 PF03266.10 168 4.1e-05 16.3 0.1 1 1 7.1e-06 0.00024 13.8 0.0 2 31 52 81 51 102 0.95 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 8_1 - 185 NTPase_1 PF03266.10 168 9.9e-05 15.0 0.2 1 2 0.0033 0.11 5.1 0.1 2 30 30 58 29 67 0.80 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 8_1 - 185 NTPase_1 PF03266.10 168 9.9e-05 15.0 0.2 2 2 0.00042 0.014 8.0 0.0 88 113 82 107 68 129 0.72 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 6_1 - 306 GcrA PF07750.6 162 0.0001 15.5 0.0 1 1 2e-06 0.00021 14.5 0.0 6 36 5 34 2 53 0.93 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 6_1 - 306 HTH_26 PF13443.1 63 1.5e-06 21.4 0.0 1 1 2.9e-08 3e-06 20.4 0.0 4 41 11 48 10 58 0.90 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_17 - 213 KAP_NTPase PF07693.9 325 2.2e-07 23.0 0.0 1 1 2.7e-09 2.8e-07 22.7 0.0 17 115 46 142 37 202 0.69 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_1 - 306 HTH_17 PF12728.2 51 0.00097 12.4 0.9 1 1 2.2e-05 0.0022 11.2 0.1 6 26 22 43 18 86 0.88 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 6_1 - 306 HTH_11 PF08279.7 55 1.2e-06 21.0 0.1 1 1 3.1e-08 3.2e-06 19.7 0.1 8 37 12 39 5 40 0.80 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_14 - 89 MarR_2 PF12802.2 62 0.00031 13.4 0.0 1 1 5.4e-06 0.00056 12.6 0.0 34 54 38 58 36 72 0.80 # 9908 # 10174 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.528 2_17 - 213 PIF1 PF05970.9 364 4.1e-05 15.6 0.0 1 1 6.3e-07 6.5e-05 14.9 0.0 18 55 45 82 31 85 0.86 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 6_1 - 306 TrmB PF01978.14 68 0.00023 13.8 0.0 1 1 4.9e-06 0.0005 12.7 0.0 16 44 11 39 10 40 0.93 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 1_22 - 464 Helicase_RecD PF05127.9 177 4.2e-05 16.2 0.0 1 1 7.2e-07 7.4e-05 15.4 0.0 2 98 54 168 53 175 0.69 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_16 - 207 LacI PF00356.16 46 1.6e-06 20.7 0.0 1 1 4.7e-08 4.9e-06 19.1 0.0 2 22 183 203 182 206 0.87 # 19649 # 20269 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.493 6_1 - 306 DUF1670 PF07900.6 220 0.00085 11.5 0.1 1 1 1.5e-05 0.0016 10.6 0.1 189 219 9 39 4 40 0.92 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_17 - 213 AAA_10 PF12846.2 304 2.4e-06 20.1 0.4 1 2 3.1e-06 0.00011 14.7 0.0 6 47 54 97 51 107 0.82 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 2_17 - 213 AAA_10 PF12846.2 304 2.4e-06 20.1 0.4 2 2 0.0057 0.2 4.0 0.1 216 260 140 184 95 192 0.78 # 11327 # 11965 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.549 8_1 - 185 AAA_10 PF12846.2 304 9.1e-06 18.2 0.1 1 2 1.6e-06 5.6e-05 15.6 0.1 1 33 27 59 27 96 0.88 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 8_1 - 185 AAA_10 PF12846.2 304 9.1e-06 18.2 0.1 2 2 0.04 1.4 1.2 0.0 201 247 66 117 59 127 0.69 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 3_16 - 639 AAA_10 PF12846.2 304 0.0078 8.5 6.2 1 2 0.0011 0.038 6.3 1.1 9 24 41 59 39 280 0.88 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 3_16 - 639 AAA_10 PF12846.2 304 0.0078 8.5 6.2 2 2 0.0041 0.14 4.4 0.3 97 262 465 617 380 629 0.75 # 12157 # 14073 # 1 # ID=3_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.529 6_1 - 306 HTH_20 PF12840.2 61 0.00033 13.4 0.0 1 1 1.4e-05 0.00073 12.3 0.0 19 46 13 39 10 40 0.89 # 87 # 1004 # 1 # ID=6_1;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.533 2_13 - 214 HTH_20 PF12840.2 61 0.00054 12.7 0.0 1 1 4.3e-05 0.0022 10.8 0.0 21 47 25 51 11 58 0.89 # 9071 # 9712 # -1 # ID=2_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.556 1_24 - 226 Methyltransf_11 PF08241.7 95 0.0006 13.3 0.0 1 3 0.045 4.6 0.8 0.0 46 65 4 25 2 28 0.77 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_24 - 226 Methyltransf_11 PF08241.7 95 0.0006 13.3 0.0 2 3 0.0023 0.24 4.9 0.0 78 93 53 68 47 70 0.84 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_24 - 226 Methyltransf_11 PF08241.7 95 0.0006 13.3 0.0 3 3 0.0066 0.68 3.5 0.0 5 41 172 207 168 223 0.74 # 26136 # 26813 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_19 - 412 ArsA_ATPase PF02374.10 305 0.00032 12.7 0.0 1 1 7.9e-06 0.00081 11.4 0.0 4 136 123 265 120 267 0.70 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_19 - 412 AAA_31 PF13614.1 157 1.2e-07 24.7 0.0 1 2 1.6e-05 0.0017 11.3 0.0 2 90 121 214 120 229 0.80 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_19 - 412 AAA_31 PF13614.1 157 1.2e-07 24.7 0.0 2 2 2.7e-05 0.0028 10.5 0.0 109 148 247 285 231 290 0.87 # 21294 # 22529 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.453 1_22 - 464 TIGR02397 TIGR02397 355 0.0003 12.7 0.0 1 1 8.5e-06 0.00088 11.2 0.0 16 64 31 77 24 96 0.72 # 23882 # 25273 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_15 - 314 Yae1_N PF09811.4 39 0.00012 14.6 4.8 1 1 2.1e-06 0.00022 13.7 4.8 8 35 254 281 253 282 0.81 # 18642 # 19583 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 3_21 - 359 TIGR02012 TIGR02012 321 1.4e-47 155.2 0.0 1 1 2.5e-49 2.5e-47 154.3 0.0 49 284 45 307 11 329 0.78 # 17264 # 18340 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 2_12 - 419 Terminase_3 PF04466.8 387 7.8e-08 24.6 0.0 1 2 2.1e-09 2.1e-07 23.2 0.0 2 123 24 143 23 161 0.91 # 7812 # 9068 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 2_12 - 419 Terminase_3 PF04466.8 387 7.8e-08 24.6 0.0 2 2 0.08 8.3 -1.8 0.0 343 385 363 402 340 404 0.64 # 7812 # 9068 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.540 1_8 - 403 MULE PF10551.4 93 7.6e-15 47.9 0.0 1 1 2.4e-16 2.5e-14 46.3 0.0 16 91 185 260 170 262 0.86 # 10513 # 11721 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 8_1 - 185 IstB_IS21 PF01695.12 178 6.6e-67 217.3 0.0 1 1 2.2e-68 7.6e-67 217.1 0.0 21 178 1 160 1 160 0.98 # 67 # 621 # -1 # ID=8_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.495 9_2 - 116 IstB_IS21 PF01695.12 178 9.8e-21 66.9 0.0 1 2 0.038 1.3 1.3 0.0 64 97 25 57 23 61 0.66 # 231 # 578 # 1 # ID=9_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 9_2 - 116 IstB_IS21 PF01695.12 178 9.8e-21 66.9 0.0 2 2 1.2e-21 4.2e-20 64.8 0.0 1 61 56 116 56 116 0.98 # 231 # 578 # 1 # ID=9_2;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 3_21 - 359 IstB_IS21 PF01695.12 178 0.00017 14.0 0.0 1 1 1.1e-05 0.00036 12.9 0.0 52 81 56 85 51 100 0.83 # 17264 # 18340 # -1 # ID=3_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.545 1_15 - 314 Glyco_trans_4_3 PF12000.3 171 0.00052 12.6 0.1 1 1 4.6e-05 0.0024 10.5 0.0 7 65 197 256 193 259 0.88 # 18642 # 19583 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.513 1_10 - 102 Glyco_trans_4_3 PF12000.3 171 0.00069 12.2 0.0 1 1 1.6e-05 0.00084 11.9 0.0 17 66 7 57 1 62 0.89 # 13411 # 13716 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.480 5_1 - 188 Phage_AlpA PF05930.7 51 0.00032 13.4 0.0 1 1 5.4e-06 0.00056 12.6 0.0 4 51 80 132 77 132 0.85 # 156 # 719 # -1 # ID=5_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/5a08ef3b-9030-4be2-ba5a-8a9c83ff5456 # Target file: checkm_output/bins/pm1352/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1352/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5a08ef3b-9030-4be2-ba5a-8a9c83ff5456 checkm_output/bins/pm1352/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:41:05 2017 # [ok]