# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 327 ThiF PF00899.16 136 1.4e-38 121.8 0.2 1 1 1.7e-39 2.2e-38 121.2 0.2 2 132 23 153 22 155 0.98 # 14603 # 15583 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_9 - 315 Pyr_redox_3 PF13738.1 203 0.00011 12.3 0.2 1 1 1.1e-05 0.00015 11.9 0.2 1 31 5 34 5 173 0.88 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_11 - 255 NanE PF04131.9 192 8.6e-05 11.6 0.0 1 1 1.2e-05 0.00016 10.7 0.0 143 190 173 223 159 225 0.79 # 13820 # 14584 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.363 1_9 - 315 NAD_binding_7 PF13241.1 103 6.6e-05 13.2 0.0 1 1 8.7e-06 0.00011 12.5 0.0 11 84 5 104 2 114 0.73 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_13 - 318 Rep_3 PF01051.16 222 1.9e-27 86.3 0.1 1 1 1.9e-28 2.5e-27 85.9 0.1 4 215 28 280 25 285 0.90 # 16911 # 17864 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345 1_11 - 255 His_biosynth PF00977.16 229 8.7e-07 18.4 0.0 1 2 0.0086 0.11 1.7 0.0 97 129 10 42 5 78 0.86 # 13820 # 14584 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.363 1_11 - 255 His_biosynth PF00977.16 229 8.7e-07 18.4 0.0 2 2 9.6e-07 1.2e-05 14.6 0.0 59 108 159 209 153 222 0.87 # 13820 # 14584 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.363 1_9 - 315 Pyr_redox PF00070.22 80 5.7e-07 20.0 0.8 1 2 4.1e-07 5.3e-06 16.9 0.3 2 30 4 32 3 35 0.92 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_9 - 315 Pyr_redox PF00070.22 80 5.7e-07 20.0 0.8 2 2 0.07 0.91 0.1 0.0 45 60 140 155 130 161 0.76 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_9 - 315 HI0933_like PF03486.9 409 0.00012 10.6 0.2 1 2 2.7e-05 0.00036 9.0 0.0 4 31 5 32 2 38 0.92 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_9 - 315 HI0933_like PF03486.9 409 0.00012 10.6 0.2 2 2 0.034 0.44 -1.2 0.0 251 312 69 127 64 148 0.66 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_9 - 315 NAD_binding_8 PF13450.1 68 4e-06 16.9 0.1 1 1 8.2e-07 1.1e-05 15.6 0.0 1 26 6 31 6 72 0.86 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_11 - 255 ThiG PF05690.9 247 3.2e-102 330.8 0.0 1 1 2.8e-103 3.6e-102 330.6 0.0 2 247 3 246 2 246 0.98 # 13820 # 14584 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.363 1_12 - 327 Shikimate_DH PF01488.15 135 3.1e-05 14.1 0.2 1 1 5.4e-06 7.1e-05 13.0 0.2 10 70 21 83 16 121 0.78 # 14603 # 15583 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.352 1_9 - 315 FAD_binding_2 PF00890.19 417 5.1e-05 12.2 0.0 1 1 5.8e-06 7.6e-05 11.6 0.0 4 46 6 47 5 72 0.90 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 1_4 - 172 Mga PF05043.8 87 1.3e-05 15.5 0.3 1 1 2.5e-06 3.2e-05 14.3 0.2 15 53 39 79 5 83 0.88 # 5131 # 5646 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.347 1_10 - 66 ThiS PF02597.15 77 5.6e-10 29.7 0.0 1 1 5.4e-11 7e-10 29.3 0.0 16 77 9 65 2 65 0.87 # 13622 # 13819 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.328 1_2 - 132 BOF PF04076.8 103 3e-21 65.3 0.3 1 1 2.7e-22 3.5e-21 65.1 0.3 8 101 35 128 28 130 0.93 # 2591 # 2986 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.295 1_9 - 315 DAO PF01266.19 358 5.2e-30 94.4 0.0 1 1 1.3e-29 1.7e-28 89.4 0.0 3 353 5 298 3 303 0.83 # 12694 # 13638 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.376 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4eeff62d-4a10-4eed-bb71-a0e29655b118 # Target file: checkm_output/bins/pm1337/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1337/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4eeff62d-4a10-4eed-bb71-a0e29655b118 checkm_output/bins/pm1337/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:40:33 2017 # [ok]