# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 388 KaiC PF06745.8 227 0.00082 11.5 0.0 1 1 1.4e-05 0.0014 10.7 0.0 11 59 144 191 137 201 0.76 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 1 3 0.0041 0.43 2.3 0.2 187 223 95 129 86 132 0.74 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 2 3 2.9e-06 0.0003 12.7 0.0 130 231 217 309 200 339 0.79 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 K_oxygenase PF13434.1 341 3.6e-06 19.0 0.2 3 3 0.022 2.3 -0.0 0.0 139 160 345 366 314 376 0.63 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 ABC_tran PF00005.22 137 0.00012 15.4 0.0 1 1 2.2e-06 0.00023 14.5 0.0 15 33 156 174 147 217 0.82 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_57 - 187 HTH_22 PF13309.1 64 2.7e-05 16.9 0.4 1 1 1.3e-06 0.00014 14.6 0.0 47 64 166 183 164 183 0.93 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_70 - 254 HTH_AsnC-type PF13404.1 42 0.00053 12.6 0.3 1 1 1.4e-05 0.0015 11.1 0.3 7 42 9 44 8 44 0.94 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_58 - 71 DUF2116 PF09889.4 59 0.0017 11.1 5.7 1 1 0.00073 0.077 5.9 5.7 6 35 14 54 12 60 0.75 # 49324 # 49536 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.601 1_66 - 234 rve_3 PF13683.1 67 1e-07 24.4 0.0 1 1 3.5e-09 3.8e-07 22.6 0.0 2 42 186 226 185 233 0.85 # 53664 # 54365 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_70 - 254 HTH_DeoR PF08220.7 57 2.9e-20 64.6 1.0 1 1 7.1e-22 7.5e-20 63.3 1.0 1 55 6 60 6 61 0.97 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_24 - 388 FtsK_SpoIIIE PF01580.13 205 0.00011 14.7 0.0 1 1 2.1e-06 0.00022 13.7 0.0 41 59 155 173 135 184 0.85 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_72 - 202 HTH_38 PF13936.1 44 5.2e-08 25.4 1.0 1 1 1.7e-09 1.9e-07 23.6 0.0 15 44 168 197 160 197 0.93 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_61 - 562 FAD_oxidored PF12831.2 428 6.3e-07 21.7 3.8 1 2 5.9e-09 6.3e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 FAD_oxidored PF12831.2 428 6.3e-07 21.7 3.8 2 2 0.01 1.1 1.2 0.0 84 120 305 341 261 364 0.71 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 MobB PF03205.9 140 0.00056 12.6 0.0 1 1 1e-05 0.0011 11.7 0.0 4 25 156 177 154 190 0.85 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_70 - 254 MarR PF01047.17 59 3.9e-07 22.8 0.1 1 1 1e-08 1.1e-06 21.4 0.1 7 47 9 49 5 52 0.95 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_61 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 1 3 1.5e-06 0.00016 14.8 0.0 164 199 95 130 48 134 0.85 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 2 3 5.8e-09 6.2e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 Pyr_redox_3 PF13738.1 203 1.5e-18 60.5 0.1 3 3 5.6e-08 5.9e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 NAD_binding_7 PF13241.1 103 4.1e-06 20.0 1.2 1 2 1.9e-05 0.002 11.4 0.2 9 38 100 129 96 164 0.90 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 NAD_binding_7 PF13241.1 103 4.1e-06 20.0 1.2 2 2 0.00049 0.052 6.9 0.1 8 45 271 314 264 382 0.66 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_94 - 83 HTH_8 PF02954.14 42 1.1e-05 18.0 0.1 1 1 3.6e-07 1.9e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 76406 # 76654 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_57 - 187 HTH_8 PF02954.14 42 0.00014 14.4 0.2 1 2 0.047 2.5 0.8 0.1 2 12 114 124 113 124 0.85 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_57 - 187 HTH_8 PF02954.14 42 0.00014 14.4 0.2 2 2 3.2e-05 0.0017 10.9 0.0 20 37 163 180 159 183 0.86 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_37 - 1017 AAA_19 PF13245.1 76 0.00039 13.2 0.0 1 1 1.2e-05 0.0012 11.6 0.0 14 32 492 509 481 523 0.86 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_72 - 202 Sigma70_r4_2 PF08281.7 54 1.4e-06 20.8 0.0 1 1 4e-08 4.3e-06 19.2 0.0 17 44 165 191 165 199 0.86 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_66 - 234 rve PF00665.21 120 1.2e-24 79.8 0.0 1 1 4e-26 2.1e-24 78.9 0.0 4 119 94 213 91 214 0.97 # 53664 # 54365 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_51 - 255 rve PF00665.21 120 1.1e-13 44.3 0.0 1 2 0.041 2.2 1.5 0.0 83 102 30 49 7 51 0.90 # 40814 # 41578 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_51 - 255 rve PF00665.21 120 1.1e-13 44.3 0.0 2 2 3.4e-14 1.8e-12 40.5 0.0 8 117 73 179 69 182 0.90 # 40814 # 41578 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_70 - 254 Fe_dep_repress PF01325.14 60 1.7e-06 21.0 0.2 1 1 4.1e-08 4.4e-06 19.6 0.1 13 53 10 50 8 55 0.93 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_24 - 388 AAA_23 PF13476.1 202 2.5e-06 20.9 0.8 1 1 3.9e-08 4.1e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_19 - 122 CPSase_L_D3 PF02787.14 123 0.00085 12.1 0.1 1 1 1.2e-05 0.0012 11.6 0.1 50 96 45 91 21 101 0.79 # 8580 # 8945 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.415 1_24 - 388 SMC_N PF02463.14 220 0.0011 11.2 0.0 1 1 1.8e-05 0.0019 10.4 0.0 25 50 153 178 146 195 0.81 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_67 - 122 HTH_Tnp_1 PF01527.15 76 3.1e-20 65.0 1.2 1 1 7.5e-22 4e-20 64.6 0.6 2 74 8 87 7 89 0.88 # 54413 # 54778 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_57 - 187 HTH_Tnp_1 PF01527.15 76 0.00022 14.2 0.1 1 1 8.9e-06 0.00047 13.1 0.1 15 44 154 182 140 186 0.79 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_72 - 202 GerE PF00196.14 58 3.1e-05 16.3 0.0 1 1 5.1e-07 5.4e-05 15.5 0.0 11 35 166 190 165 201 0.88 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_73 - 696 TraG-D_C PF12696.2 128 0.00014 14.7 0.1 1 1 2.4e-06 0.00025 13.9 0.1 3 94 437 524 435 556 0.78 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_68 - 308 DDE_Tnp_1 PF01609.16 213 8.6e-25 80.5 0.7 1 1 1.1e-26 1.1e-24 80.1 0.7 4 205 115 286 112 293 0.88 # 54965 # 55888 # -1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_88 - 425 ACT PF01842.20 66 4e-05 16.1 0.5 1 3 0.039 4.2 0.1 0.0 13 27 232 246 231 246 0.91 # 71987 # 73261 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 1_88 - 425 ACT PF01842.20 66 4e-05 16.1 0.5 2 3 1.3e-05 0.0014 11.2 0.0 7 27 319 339 316 339 0.93 # 71987 # 73261 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 1_88 - 425 ACT PF01842.20 66 4e-05 16.1 0.5 3 3 0.056 5.9 -0.4 0.0 30 59 365 392 363 394 0.75 # 71987 # 73261 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.603 1_70 - 254 Sigma70_r4 PF04545.11 50 0.0044 9.4 4.2 1 1 1.3e-05 0.0014 11.0 0.4 7 39 5 38 5 43 0.90 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_61 - 562 Thi4 PF01946.12 230 0.00028 13.0 0.4 1 1 6.3e-06 0.00067 11.7 0.4 19 70 100 150 95 158 0.88 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_94 - 83 HTH_37 PF13744.1 80 4.6e-05 16.2 0.0 1 1 1.8e-06 9.3e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 76406 # 76654 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_87 - 86 HTH_37 PF13744.1 80 0.00033 13.5 0.0 1 1 8.8e-06 0.00047 13.0 0.0 25 53 22 50 19 55 0.91 # 71712 # 71969 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_70 - 254 Rrf2 PF02082.15 83 2e-06 20.9 0.3 1 1 4.9e-08 5.2e-06 19.6 0.2 17 60 11 54 9 70 0.84 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_70 - 254 HTH_27 PF13463.1 68 7.7e-05 16.0 0.1 1 1 1.5e-06 0.00016 15.0 0.1 5 49 7 50 5 70 0.88 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_99 - 325 Hydantoinase_A PF01968.13 290 1.1e-07 24.2 3.8 1 2 4.7e-07 5e-05 15.4 0.1 67 96 158 186 140 195 0.83 # 78961 # 79935 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_99 - 325 Hydantoinase_A PF01968.13 290 1.1e-07 24.2 3.8 2 2 2.6e-05 0.0027 9.8 0.2 212 266 248 302 191 321 0.76 # 78961 # 79935 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_65 - 152 MerR_1 PF13411.1 69 3.7e-20 64.5 0.0 1 1 1.3e-21 6.6e-20 63.7 0.0 2 67 9 75 8 77 0.96 # 53123 # 53578 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.610 1_60 - 122 MerR_1 PF13411.1 69 5.4e-13 41.6 0.0 1 1 1.5e-14 7.9e-13 41.1 0.0 1 68 4 72 4 73 0.97 # 49835 # 50200 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.672 1_24 - 388 AAA_16 PF13191.1 185 0.00068 12.6 0.0 1 1 1.2e-05 0.0013 11.7 0.0 25 50 153 178 141 211 0.84 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 AAA_22 PF13401.1 131 4.4e-06 19.9 0.0 1 1 1.9e-07 1e-05 18.7 0.0 4 30 152 178 149 243 0.84 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_37 - 1017 AAA_22 PF13401.1 131 0.0004 13.5 0.0 1 1 2.4e-05 0.0013 11.9 0.0 8 69 492 557 486 594 0.67 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_70 - 254 DUF977 PF06163.6 127 0.00019 14.2 0.3 1 1 4.9e-06 0.00052 12.8 0.3 15 57 8 50 4 65 0.87 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_5 - 287 Methyltransf_27 PF13708.1 194 6.4e-69 224.3 0.0 1 1 1e-70 1.1e-68 223.6 0.0 2 194 89 282 88 282 0.98 # 2079 # 2939 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_57 - 187 NUMOD1 PF07453.8 37 0.00058 12.7 0.0 1 1 1.1e-05 0.0011 11.8 0.0 19 37 164 182 164 182 0.94 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_24 - 388 AAA_29 PF13555.1 62 9e-06 18.2 0.1 1 1 2e-07 2.2e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 Pyr_redox PF00070.22 80 1e-19 63.8 5.4 1 2 1.2e-06 0.00013 15.4 1.5 2 31 101 130 100 132 0.95 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 Pyr_redox PF00070.22 80 1e-19 63.8 5.4 2 2 3.2e-17 3.3e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_57 - 187 HTH_Tnp_IS630 PF01710.11 120 3e-05 16.7 0.0 1 1 6.4e-07 6.8e-05 15.6 0.0 10 42 157 185 151 186 0.86 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_61 - 562 HI0933_like PF03486.9 409 4.6e-09 28.1 5.0 1 2 4.3e-07 4.5e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 HI0933_like PF03486.9 409 4.6e-09 28.1 5.0 2 2 1.7e-06 0.00018 13.0 0.0 83 163 286 362 281 379 0.85 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_51 - 255 HTH_32 PF13565.1 77 0.0002 15.1 0.2 1 1 1.3e-05 0.00071 13.4 0.2 37 76 15 50 6 51 0.83 # 40814 # 41578 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_57 - 187 HTH_32 PF13565.1 77 0.0012 12.6 6.7 1 2 0.095 5.1 1.1 0.1 26 59 36 71 20 87 0.70 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_57 - 187 HTH_32 PF13565.1 77 0.0012 12.6 6.7 2 2 5.3e-05 0.0028 11.5 3.5 7 77 124 182 119 182 0.68 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_70 - 254 GntR PF00392.16 64 3.7e-07 22.6 0.5 1 1 8.1e-09 8.6e-07 21.4 0.5 26 59 21 54 9 59 0.92 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_94 - 83 HTH_3 PF01381.17 55 2e-09 30.2 0.1 1 1 1.6e-10 3.3e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 76406 # 76654 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_3 - 89 HTH_3 PF01381.17 55 1.2e-06 21.4 0.0 1 1 7e-08 1.5e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_87 - 86 HTH_3 PF01381.17 55 2.7e-05 17.0 0.1 1 1 1.8e-06 3.9e-05 16.5 0.1 2 32 21 51 21 56 0.89 # 71712 # 71969 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_103 - 160 HTH_3 PF01381.17 55 9.7e-05 15.2 0.2 1 2 0.0036 0.077 5.9 0.0 2 20 15 33 14 37 0.91 # 81571 # 82050 # 1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_103 - 160 HTH_3 PF01381.17 55 9.7e-05 15.2 0.2 2 2 0.0017 0.035 7.0 0.0 1 23 96 118 96 120 0.89 # 81571 # 82050 # 1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_57 - 187 HTH_3 PF01381.17 55 0.00027 13.8 0.7 1 1 5.7e-05 0.0012 11.7 0.4 2 31 152 183 151 184 0.86 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_72 - 202 HTH_23 PF13384.1 50 1.3e-07 24.2 0.2 1 1 9.7e-09 1.3e-07 24.2 0.2 10 42 166 198 160 201 0.92 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_67 - 122 HTH_23 PF13384.1 50 1.5e-07 23.9 0.1 1 1 2.1e-08 2.8e-07 23.1 0.1 3 48 14 60 12 62 0.90 # 54413 # 54778 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_87 - 86 HTH_23 PF13384.1 50 3.3e-06 19.7 0.2 1 1 4.1e-07 5.5e-06 19.0 0.2 12 38 23 49 19 56 0.84 # 71712 # 71969 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 HTH_23 PF13384.1 50 7.4e-06 18.6 0.0 1 1 8.5e-07 1.1e-05 18.0 0.0 16 39 38 64 33 68 0.83 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_57 - 187 HTH_23 PF13384.1 50 2e-05 17.2 1.3 1 1 2.3e-06 3.1e-05 16.6 0.1 10 39 151 183 148 184 0.82 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_70 - 254 HTH_23 PF13384.1 50 2.6e-05 16.8 0.1 1 1 5e-06 6.7e-05 15.5 0.1 4 45 4 47 1 50 0.86 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_94 - 83 HTH_23 PF13384.1 50 4.7e-05 16.0 0.0 1 1 7e-06 9.3e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 76406 # 76654 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_54 - 312 HTH_23 PF13384.1 50 0.00012 14.7 0.8 1 1 3.9e-05 0.00051 12.7 0.2 4 37 269 302 266 310 0.89 # 42530 # 43465 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_57 - 187 HTH_7 PF02796.10 45 1.1e-16 53.5 0.3 1 1 7.1e-18 2.5e-16 52.3 0.3 1 44 141 184 141 185 0.98 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_54 - 312 HTH_7 PF02796.10 45 1.1e-08 27.9 0.3 1 2 0.081 2.9 0.9 0.0 20 29 100 110 95 112 0.76 # 42530 # 43465 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_54 - 312 HTH_7 PF02796.10 45 1.1e-08 27.9 0.3 2 2 5.3e-09 1.9e-07 23.9 0.0 1 43 264 304 264 305 0.95 # 42530 # 43465 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_72 - 202 HTH_7 PF02796.10 45 1.6e-05 17.7 0.0 1 1 1.3e-06 4.6e-05 16.3 0.0 13 38 165 190 156 190 0.93 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_94 - 83 HTH_19 PF12844.2 64 4.2e-08 26.2 0.0 1 1 1.7e-09 6.1e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 76406 # 76654 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_87 - 86 HTH_19 PF12844.2 64 9e-06 18.7 0.0 1 1 3.5e-07 1.2e-05 18.3 0.0 5 35 21 51 21 60 0.91 # 71712 # 71969 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 HTH_19 PF12844.2 64 8.9e-05 15.5 0.0 1 1 3.4e-06 0.00012 15.1 0.0 4 39 33 69 30 73 0.85 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_67 - 122 HTH_29 PF13551.1 112 3.5e-05 16.9 0.1 1 1 9.5e-07 5e-05 16.4 0.1 11 70 29 87 18 110 0.66 # 54413 # 54778 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_72 - 202 HTH_29 PF13551.1 112 4.5e-05 16.6 0.5 1 2 0.014 0.75 3.0 0.0 51 88 43 87 25 101 0.62 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_72 - 202 HTH_29 PF13551.1 112 4.5e-05 16.6 0.5 2 2 3.8e-05 0.002 11.3 0.2 4 36 166 197 165 200 0.89 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_61 - 562 GIDA PF01134.17 392 2.8e-06 19.4 5.3 1 2 2.6e-08 2.8e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 GIDA PF01134.17 392 2.8e-06 19.4 5.3 2 2 0.01 1.1 1.0 0.3 349 385 390 426 376 430 0.79 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 XdhC_C PF13478.1 136 0.00088 12.6 1.0 1 2 0.08 8.5 -0.3 0.1 1 29 101 129 101 163 0.86 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 XdhC_C PF13478.1 136 0.00088 12.6 1.0 2 2 6.9e-05 0.0073 9.6 0.1 1 66 273 351 273 371 0.64 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 NAD_binding_8 PF13450.1 68 7.3e-05 15.8 1.2 1 1 6.9e-07 7.3e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_51 - 255 DDE_Tnp_IS66 PF03050.9 271 1.2e-09 30.7 0.4 1 1 1.7e-11 1.8e-09 30.2 0.4 11 133 16 144 8 183 0.86 # 40814 # 41578 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_61 - 562 Trp_halogenase PF04820.9 454 0.0047 8.5 3.3 1 1 8.1e-05 0.0086 7.6 3.3 1 47 100 143 100 151 0.76 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_73 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 1 3 1.7e-05 0.0018 9.8 0.0 16 36 134 154 125 158 0.88 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_73 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 2 3 9.3e-05 0.0098 7.4 0.1 93 140 235 281 229 303 0.80 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_73 - 696 TrwB_AAD_bind PF10412.4 386 2e-06 19.6 0.9 3 3 0.083 8.8 -2.3 0.0 293 323 482 512 405 546 0.58 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_37 - 1017 AAA_18 PF13238.1 129 5.8e-05 16.4 0.1 1 1 4.2e-06 0.00044 13.6 0.0 2 19 492 509 492 562 0.79 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_83 - 248 IMS_HHH PF11798.3 32 0.00028 13.9 0.1 1 1 9e-06 0.00095 12.3 0.1 14 32 7 25 5 25 0.95 # 69687 # 70430 # 1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_57 - 187 HTH_psq PF05225.11 45 0.00013 14.6 0.0 1 1 2.5e-06 0.00027 13.5 0.0 21 39 166 184 165 186 0.91 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_24 - 388 DUF87 PF01935.12 229 9.9e-05 15.2 0.0 1 1 1.8e-06 0.00019 14.2 0.0 28 45 157 174 155 188 0.89 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_67 - 122 HTH_28 PF13518.1 52 2.2e-08 27.0 0.5 1 1 2.3e-09 4.1e-08 26.2 0.0 1 43 17 60 17 63 0.93 # 54413 # 54778 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_72 - 202 HTH_28 PF13518.1 52 2.7e-08 26.7 0.4 1 1 3.7e-09 6.5e-08 25.5 0.4 4 38 165 199 165 201 0.92 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_70 - 254 HTH_28 PF13518.1 52 4.2e-05 16.5 0.0 1 1 5.6e-06 0.0001 15.3 0.0 4 41 9 48 6 53 0.89 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_57 - 187 HTH_28 PF13518.1 52 5.1e-05 16.3 0.1 1 1 2.9e-06 5.1e-05 16.3 0.1 9 34 158 183 147 184 0.84 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_3 - 89 HTH_28 PF13518.1 52 6.6e-05 15.9 0.0 1 1 5.2e-06 9.2e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_94 - 83 HTH_28 PF13518.1 52 0.00044 13.3 0.1 1 1 5.5e-05 0.00096 12.2 0.1 8 29 8 31 6 35 0.78 # 76406 # 76654 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_65 - 152 MerR-DNA-bind PF09278.6 65 3.5e-21 68.4 1.4 1 1 1.2e-22 6.5e-21 67.6 1.1 1 65 51 113 51 113 0.95 # 53123 # 53578 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.610 1_60 - 122 MerR-DNA-bind PF09278.6 65 0.0002 14.8 6.6 1 1 6.7e-06 0.00035 14.0 6.6 1 64 47 108 47 109 0.80 # 49835 # 50200 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.672 1_70 - 254 HTH_24 PF13412.1 48 3.7e-07 22.5 0.4 1 1 1.9e-08 1e-06 21.1 0.2 5 47 7 49 5 50 0.95 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_72 - 202 HTH_24 PF13412.1 48 2.5e-05 16.6 0.0 1 1 1e-06 5.5e-05 15.6 0.0 16 40 172 196 168 196 0.89 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_57 - 187 HTH_10 PF04967.7 53 1.4e-05 17.6 0.2 1 1 1.7e-06 9.1e-05 15.0 0.0 27 45 165 183 162 185 0.93 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_72 - 202 HTH_10 PF04967.7 53 0.00046 12.8 0.0 1 1 2.6e-05 0.0014 11.3 0.0 27 46 177 196 173 199 0.86 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_61 - 562 TIGR01292 TIGR01292 300 1.4e-19 62.7 3.5 1 2 4.9e-06 0.00052 11.5 1.2 2 39 100 137 99 143 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 TIGR01292 TIGR01292 300 1.4e-19 62.7 3.5 2 2 3.9e-18 4.2e-16 51.2 0.0 143 296 272 425 214 427 0.82 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 Miro PF08477.8 119 0.001 12.6 0.0 1 1 2.1e-05 0.0023 11.5 0.0 4 28 157 186 156 220 0.72 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_94 - 83 HTH_31 PF13560.1 64 2e-09 30.6 0.9 1 1 1.2e-10 2.6e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 76406 # 76654 # 1 # ID=1_94;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_103 - 160 HTH_31 PF13560.1 64 1.5e-07 24.5 1.6 1 2 0.0061 0.13 5.6 0.1 6 33 14 41 12 47 0.88 # 81571 # 82050 # 1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_103 - 160 HTH_31 PF13560.1 64 1.5e-07 24.5 1.6 2 2 7.5e-07 1.6e-05 18.1 0.3 4 39 94 129 91 135 0.88 # 81571 # 82050 # 1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_87 - 86 HTH_31 PF13560.1 64 3.3e-07 23.5 0.7 1 1 1.6e-08 3.3e-07 23.5 0.7 7 36 21 50 6 58 0.90 # 71712 # 71969 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 HTH_31 PF13560.1 64 2.2e-06 20.9 0.0 1 1 1.4e-07 3e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_72 - 202 HTH_31 PF13560.1 64 0.0025 11.0 4.3 1 1 0.00025 0.0052 10.0 0.5 11 39 170 198 142 201 0.90 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_37 - 1017 DUF2075 PF09848.4 352 0.00039 12.4 0.0 1 1 1e-05 0.0011 10.9 0.0 5 22 492 509 489 526 0.84 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_24 - 388 T2SE PF00437.15 272 2.3e-23 75.4 0.0 1 1 3.4e-25 3.6e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_99 - 325 StbA PF06406.6 318 6.6e-157 514.3 0.2 1 1 7e-159 7.4e-157 514.1 0.2 1 318 1 322 1 322 0.99 # 78961 # 79935 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_24 - 388 NACHT PF05729.7 166 0.00036 13.2 0.0 1 1 6.6e-06 0.0007 12.3 0.0 4 29 156 181 154 188 0.83 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_37 - 1017 AAA_17 PF13207.1 121 4.8e-05 17.2 0.0 1 1 2.9e-06 0.00031 14.6 0.0 3 28 492 523 492 587 0.67 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_61 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 1 3 9.5e-09 1e-06 20.8 5.3 2 32 101 131 100 138 0.91 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 2 3 0.034 3.6 -0.8 0.2 142 204 311 366 286 382 0.67 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 FAD_binding_2 PF00890.19 417 1e-06 20.8 5.3 3 3 0.0019 0.2 3.4 0.1 373 402 374 405 368 419 0.86 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 AAA_25 PF13481.1 194 6e-06 18.8 0.0 1 1 1.1e-07 1.2e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_12 - 147 RepA_N PF06970.6 76 0.0009 12.1 0.0 1 1 1.7e-05 0.0018 11.1 0.0 15 44 56 85 54 90 0.92 # 5392 # 5832 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.558 1_99 - 325 Hydant_A_N PF05378.8 176 0.0011 11.5 3.9 1 4 0.08 8.4 -1.2 0.0 1 19 2 20 2 48 0.82 # 78961 # 79935 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_99 - 325 Hydant_A_N PF05378.8 176 0.0011 11.5 3.9 2 4 0.049 5.2 -0.5 0.0 108 154 38 86 15 103 0.67 # 78961 # 79935 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_99 - 325 Hydant_A_N PF05378.8 176 0.0011 11.5 3.9 3 4 0.057 6 -0.7 0.0 95 129 113 147 89 153 0.76 # 78961 # 79935 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_99 - 325 Hydant_A_N PF05378.8 176 0.0011 11.5 3.9 4 4 3.6e-05 0.0038 9.7 0.2 2 51 170 217 169 226 0.82 # 78961 # 79935 # 1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.554 1_44 - 166 Transposase_20 PF02371.11 87 3e-25 81.2 0.2 1 1 1e-26 5.5e-25 80.4 0.2 2 78 41 117 40 127 0.94 # 34695 # 35192 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_55 - 335 Transposase_20 PF02371.11 87 1.1e-24 79.4 0.2 1 1 4.6e-26 2.5e-24 78.3 0.2 2 78 210 286 209 296 0.94 # 44581 # 45585 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_72 - 202 HTH_Tnp_ISL3 PF13542.1 52 4.4e-05 15.7 0.2 1 1 2e-06 0.00011 14.4 0.2 29 51 175 197 166 198 0.85 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00039 12.6 0.0 1 1 1e-05 0.00053 12.2 0.0 19 49 35 64 33 65 0.91 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_65 - 152 MerR PF00376.18 38 1e-14 46.8 0.1 1 1 5.9e-16 2.1e-14 45.9 0.1 1 38 9 46 9 46 0.99 # 53123 # 53578 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.610 1_60 - 122 MerR PF00376.18 38 3.9e-07 22.6 0.1 1 1 1.7e-08 5.9e-07 22.0 0.1 2 38 6 42 5 42 0.89 # 49835 # 50200 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.672 1_70 - 254 MerR PF00376.18 38 0.00084 11.9 0.3 1 1 0.00019 0.0066 9.1 0.1 1 18 21 38 21 53 0.80 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_57 - 187 CENP-B_N PF04218.8 53 3e-06 19.6 0.0 1 1 2.1e-07 5.7e-06 18.7 0.0 17 43 156 182 152 186 0.92 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_67 - 122 CENP-B_N PF04218.8 53 3.1e-05 16.4 0.0 1 1 2.2e-06 5.9e-05 15.5 0.0 9 44 15 51 8 55 0.81 # 54413 # 54778 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_72 - 202 CENP-B_N PF04218.8 53 0.00017 14.0 0.0 1 1 1.6e-05 0.00042 12.8 0.0 21 45 172 196 165 199 0.87 # 60796 # 61401 # 1 # ID=1_72;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.561 1_3 - 89 CENP-B_N PF04218.8 53 0.0015 11.0 0.0 1 1 7.6e-05 0.002 10.6 0.0 24 49 44 69 34 72 0.88 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_70 - 254 PaaX PF07848.7 70 3.1e-06 20.1 0.2 1 1 5.5e-08 5.9e-06 19.3 0.2 15 68 14 64 10 66 0.85 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_24 - 388 Ribosomal_S5 PF00333.15 67 3.3e-05 16.6 0.1 1 2 0.00093 0.098 5.5 0.0 26 45 84 103 77 114 0.83 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 Ribosomal_S5 PF00333.15 67 3.3e-05 16.6 0.1 2 2 0.00012 0.012 8.4 0.0 21 54 242 274 230 278 0.91 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_24 - 388 RNA_helicase PF00910.17 107 0.0012 12.1 0.0 1 1 2.5e-05 0.0026 10.9 0.0 3 26 157 180 156 197 0.81 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_61 - 562 AlaDh_PNT_C PF01262.16 168 9e-07 21.6 2.3 1 2 3.9e-06 0.00042 12.9 0.3 16 50 94 128 80 131 0.87 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 AlaDh_PNT_C PF01262.16 168 9e-07 21.6 2.3 2 2 0.00012 0.012 8.1 0.1 19 60 269 310 260 341 0.84 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 3HCDH_N PF02737.13 180 0.017 7.7 6.6 1 2 0.0086 0.91 2.1 2.8 1 30 100 129 100 133 0.93 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 3HCDH_N PF02737.13 180 0.017 7.7 6.6 2 2 0.0003 0.032 6.9 0.1 2 36 273 307 272 359 0.75 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_87 - 86 Mor PF08765.6 108 0.0004 13.2 0.0 1 1 4.7e-06 0.0005 12.9 0.0 71 92 27 48 18 57 0.85 # 71712 # 71969 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 Phage_CII PF05269.6 91 0.00076 12.5 0.0 1 1 9.2e-06 0.00097 12.2 0.0 17 45 36 64 32 81 0.83 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_61 - 562 Glyco_transf_4 PF13439.1 177 0.00016 14.4 0.5 1 1 2.7e-06 0.00028 13.6 0.1 13 39 277 303 274 335 0.84 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_24 - 388 ATP_bind_1 PF03029.12 238 0.00086 11.8 0.0 1 1 1.3e-05 0.0014 11.2 0.0 1 25 157 181 157 191 0.84 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_51 - 255 DDE_Tnp_IS240 PF13610.1 140 1.1e-53 174.0 0.0 1 1 2.6e-55 1.4e-53 173.6 0.0 3 139 73 211 71 212 0.98 # 40814 # 41578 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_28 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00028 13.9 0.0 1 1 5.6e-06 0.0003 13.8 0.0 29 64 18 52 5 58 0.83 # 18027 # 18224 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.449 1_87 - 86 HTH_26 PF13443.1 63 8.6e-05 15.7 0.0 1 1 2.7e-06 0.00014 15.0 0.0 4 34 22 52 21 56 0.90 # 71712 # 71969 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_3 - 89 HTH_26 PF13443.1 63 0.00028 14.1 0.0 1 1 7.2e-06 0.00038 13.7 0.0 11 47 43 78 33 82 0.90 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_70 - 254 HTH_11 PF08279.7 55 1e-12 40.6 0.3 1 1 3.3e-14 1.8e-12 39.8 0.3 1 53 6 55 6 57 0.89 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_57 - 187 HTH_11 PF08279.7 55 0.00016 14.4 0.2 1 1 2.5e-05 0.0013 11.4 0.0 20 37 166 183 162 184 0.91 # 48633 # 49193 # -1 # ID=1_57;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.622 1_68 - 308 DDE_Tnp_1_5 PF13737.1 112 3.5e-47 152.2 0.1 1 2 5e-48 5.3e-46 148.4 0.0 1 112 19 130 19 130 0.96 # 54965 # 55888 # -1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_68 - 308 DDE_Tnp_1_5 PF13737.1 112 3.5e-47 152.2 0.1 2 2 0.031 3.3 0.9 0.0 42 68 263 291 234 297 0.82 # 54965 # 55888 # -1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_54 - 312 Sigma70_ECF PF07638.6 185 3e-05 16.7 1.9 1 2 0.034 3.6 0.2 0.1 28 92 103 174 92 180 0.66 # 42530 # 43465 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_54 - 312 Sigma70_ECF PF07638.6 185 3e-05 16.7 1.9 2 2 7.4e-07 7.8e-05 15.4 0.3 115 175 244 306 220 310 0.77 # 42530 # 43465 # 1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.606 1_70 - 254 MarR_2 PF12802.2 62 1.6e-07 23.9 2.4 1 2 3.5e-09 3.8e-07 22.8 0.7 8 54 8 52 5 65 0.92 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_70 - 254 MarR_2 PF12802.2 62 1.6e-07 23.9 2.4 2 2 0.087 9.2 -0.9 0.0 26 44 227 245 219 248 0.73 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_70 - 254 HTH_5 PF01022.15 47 2.2e-05 17.1 0.4 1 1 9.3e-07 9.9e-05 15.0 0.2 7 45 10 49 8 51 0.90 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_70 - 254 TrmB PF01978.14 68 2.4e-05 17.0 0.2 1 1 4.7e-07 5e-05 16.0 0.2 15 54 11 51 10 62 0.90 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_61 - 562 Pyr_redox_2 PF07992.9 201 7.5e-43 139.7 0.0 1 1 1.6e-44 1.7e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_3 - 89 HTH_Crp_2 PF13545.1 76 0.00048 12.9 0.0 1 1 6.6e-06 0.0007 12.4 0.0 26 50 40 64 32 65 0.88 # 884 # 1150 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.581 1_70 - 254 HTH_Mga PF08280.6 59 0.00015 14.6 0.0 1 1 3.1e-06 0.00033 13.4 0.0 4 44 4 44 3 50 0.94 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_61 - 562 DAO PF01266.19 358 7e-12 37.8 7.5 1 2 1.9e-08 2e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_61 - 562 DAO PF01266.19 358 7e-12 37.8 7.5 2 2 7.7e-09 8.1e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 50218 # 51903 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_70 - 254 DUF1670 PF07900.6 220 0.00011 14.4 0.1 1 1 1.5e-06 0.00016 13.9 0.1 101 203 15 117 7 124 0.79 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_37 - 1017 AAA_10 PF12846.2 304 8e-42 136.6 0.0 1 1 4.6e-43 1.6e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 24136 # 27186 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_73 - 696 AAA_10 PF12846.2 304 6.7e-10 31.8 0.0 1 1 2.8e-11 9.9e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 61984 # 64071 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_24 - 388 AAA_10 PF12846.2 304 1.3e-06 21.0 0.0 1 1 2.1e-07 7.4e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_70 - 254 HTH_20 PF12840.2 61 6.2e-07 22.2 1.5 1 1 1.4e-08 1.4e-06 21.0 0.1 14 57 9 52 7 55 0.93 # 56935 # 57696 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.604 1_49 - 280 Pterin_bind PF00809.17 210 2.7e-58 189.7 0.0 1 1 3e-60 3.2e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 38840 # 39679 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_15 - 145 SSB PF00436.20 104 7.7e-32 102.3 0.2 1 1 8.4e-34 8.9e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 6608 # 7042 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.485 1_66 - 234 HTH_21 PF13276.1 60 1.2e-17 56.7 0.2 1 1 2.1e-19 2.2e-17 55.9 0.2 6 57 22 76 14 78 0.74 # 53664 # 54365 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.568 1_24 - 388 GTP_EFTU PF00009.22 188 0.0012 11.3 0.0 1 1 2e-05 0.0021 10.5 0.0 8 34 157 183 155 195 0.87 # 12805 # 13968 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/d5c7efe9-75fb-4d56-871c-caab6c76a5d3 # Target file: checkm_output/bins/pm1327/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1327/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d5c7efe9-75fb-4d56-871c-caab6c76a5d3 checkm_output/bins/pm1327/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:40:26 2017 # [ok]