# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 388 KaiC PF06745.8 227 0.00069 11.5 0.0 1 1 1.4e-05 0.0012 10.7 0.0 11 59 144 191 137 201 0.76 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_10 - 388 ABC_tran PF00005.22 137 0.0001 15.4 0.0 1 1 2.2e-06 0.0002 14.5 0.0 15 33 156 174 147 217 0.82 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_69 - 254 HTH_AsnC-type PF13404.1 42 0.00044 12.6 0.3 1 1 1.4e-05 0.0013 11.1 0.3 7 42 9 44 8 44 0.94 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_69 - 254 HTH_DeoR PF08220.7 57 2.4e-20 64.6 1.0 1 1 7.1e-22 6.3e-20 63.3 1.0 1 55 6 60 6 61 0.97 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_10 - 388 FtsK_SpoIIIE PF01580.13 205 9.4e-05 14.7 0.0 1 1 2.1e-06 0.00019 13.7 0.0 41 59 155 173 135 184 0.85 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_67 - 202 HTH_38 PF13936.1 44 4.4e-08 25.4 1.0 1 1 1.7e-09 1.6e-07 23.6 0.0 15 44 168 197 160 197 0.93 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 388 MobB PF03205.9 140 0.00047 12.6 0.0 1 1 1e-05 0.00092 11.7 0.0 4 25 156 177 154 190 0.85 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_69 - 254 MarR PF01047.17 59 3.3e-07 22.8 0.1 1 1 1e-08 8.9e-07 21.4 0.1 7 47 9 49 5 52 0.95 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_45 - 83 HTH_8 PF02954.14 42 9e-06 18.0 0.1 1 1 1.8e-07 1.6e-05 17.2 0.1 18 36 14 32 13 33 0.92 # 28542 # 28790 # -1 # ID=1_45;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_85 - 1017 AAA_19 PF13245.1 76 0.00033 13.2 0.0 1 1 1.2e-05 0.001 11.6 0.0 14 32 492 509 481 523 0.86 # 65634 # 68684 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_67 - 202 Sigma70_r4_2 PF08281.7 54 1.2e-06 20.8 0.0 1 1 4e-08 3.6e-06 19.2 0.0 17 44 165 191 165 199 0.86 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_73 - 514 zf-ribbon_3 PF13248.1 26 0.05 5.7 9.1 1 2 9.1e-05 0.0081 8.2 0.9 18 24 95 101 93 108 0.74 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_73 - 514 zf-ribbon_3 PF13248.1 26 0.05 5.7 9.1 2 2 0.0085 0.76 1.9 0.1 18 23 449 454 446 457 0.83 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_69 - 254 Fe_dep_repress PF01325.14 60 1.4e-06 21.0 0.2 1 1 4.1e-08 3.7e-06 19.6 0.1 13 53 10 50 8 55 0.93 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_10 - 388 AAA_23 PF13476.1 202 2.1e-06 20.9 0.8 1 1 3.9e-08 3.4e-06 20.2 0.2 19 44 152 177 122 198 0.85 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_15 - 122 CPSase_L_D3 PF02787.14 123 0.00072 12.1 0.1 1 1 1.2e-05 0.001 11.6 0.1 50 96 45 91 21 101 0.79 # 13265 # 13630 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.415 1_10 - 388 SMC_N PF02463.14 220 0.0009 11.2 0.0 1 1 1.8e-05 0.0016 10.4 0.0 25 50 153 178 146 195 0.81 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_67 - 202 GerE PF00196.14 58 2.6e-05 16.3 0.0 1 1 5.1e-07 4.6e-05 15.5 0.0 11 35 166 190 165 201 0.88 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_66 - 696 TraG-D_C PF12696.2 128 0.00012 14.7 0.1 1 1 2.4e-06 0.00021 13.9 0.1 3 94 437 524 435 556 0.78 # 41125 # 43212 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_71 - 308 DDE_Tnp_1 PF01609.16 213 7.2e-25 80.5 0.7 1 1 1.1e-26 9.6e-25 80.1 0.7 4 205 115 286 112 293 0.88 # 49308 # 50231 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_51 - 425 ACT PF01842.20 66 3.4e-05 16.1 0.5 1 3 0.039 3.5 0.1 0.0 13 27 232 246 231 246 0.91 # 31935 # 33209 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_51 - 425 ACT PF01842.20 66 3.4e-05 16.1 0.5 2 3 1.3e-05 0.0011 11.2 0.0 7 27 319 339 316 339 0.93 # 31935 # 33209 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_51 - 425 ACT PF01842.20 66 3.4e-05 16.1 0.5 3 3 0.056 5 -0.4 0.0 30 59 365 392 363 394 0.75 # 31935 # 33209 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_69 - 254 Sigma70_r4 PF04545.11 50 0.0037 9.4 4.2 1 1 1.3e-05 0.0012 11.0 0.4 7 39 5 38 5 43 0.90 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_45 - 83 HTH_37 PF13744.1 80 3.8e-05 16.2 0.0 1 1 1.8e-06 7.8e-05 15.2 0.0 24 54 7 37 4 46 0.89 # 28542 # 28790 # -1 # ID=1_45;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_52 - 86 HTH_37 PF13744.1 80 0.00028 13.5 0.0 1 1 8.8e-06 0.00039 13.0 0.0 25 53 22 50 19 55 0.91 # 33227 # 33484 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_69 - 254 Rrf2 PF02082.15 83 1.7e-06 20.9 0.3 1 1 4.9e-08 4.4e-06 19.6 0.2 17 60 11 54 9 70 0.84 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_69 - 254 HTH_27 PF13463.1 68 6.4e-05 16.0 0.1 1 1 1.5e-06 0.00013 15.0 0.1 5 49 7 50 5 70 0.88 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_40 - 325 Hydantoinase_A PF01968.13 290 8.9e-08 24.2 3.8 1 2 4.7e-07 4.2e-05 15.4 0.1 67 96 158 186 140 195 0.83 # 25261 # 26235 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_40 - 325 Hydantoinase_A PF01968.13 290 8.9e-08 24.2 3.8 2 2 2.6e-05 0.0023 9.8 0.2 212 266 248 302 191 321 0.76 # 25261 # 26235 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_10 - 388 AAA_16 PF13191.1 185 0.00057 12.6 0.0 1 1 1.2e-05 0.0011 11.7 0.0 25 50 153 178 141 211 0.84 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_10 - 388 AAA_22 PF13401.1 131 3.7e-06 19.9 0.0 1 1 1.9e-07 8.6e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_85 - 1017 AAA_22 PF13401.1 131 0.00034 13.5 0.0 1 1 2.4e-05 0.0011 11.9 0.0 8 69 492 557 486 594 0.67 # 65634 # 68684 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_69 - 254 DUF977 PF06163.6 127 0.00016 14.2 0.3 1 1 4.9e-06 0.00044 12.8 0.3 15 57 8 50 4 65 0.87 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_29 - 287 Methyltransf_27 PF13708.1 194 5.4e-69 224.3 0.0 1 1 1e-70 9.1e-69 223.6 0.0 2 194 89 282 88 282 0.98 # 19271 # 20131 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 1_10 - 388 AAA_29 PF13555.1 62 7.5e-06 18.2 0.1 1 1 2e-07 1.8e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_73 - 514 A2L_zn_ribbon PF08792.5 33 0.0059 8.9 4.7 1 2 0.00018 0.016 7.5 0.6 5 29 76 101 74 102 0.90 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_73 - 514 A2L_zn_ribbon PF08792.5 33 0.0059 8.9 4.7 2 2 0.0078 0.7 2.3 0.3 20 28 446 454 444 457 0.62 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_69 - 254 GntR PF00392.16 64 3.1e-07 22.6 0.5 1 1 8.1e-09 7.2e-07 21.4 0.5 26 59 21 54 9 59 0.92 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_45 - 83 HTH_3 PF01381.17 55 1.6e-09 30.2 0.1 1 1 1.2e-10 2.8e-09 29.5 0.1 4 45 9 50 6 56 0.86 # 28542 # 28790 # -1 # ID=1_45;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_31 - 89 HTH_3 PF01381.17 55 9.9e-07 21.4 0.0 1 1 5.6e-08 1.3e-06 21.0 0.0 8 36 41 69 33 78 0.88 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_52 - 86 HTH_3 PF01381.17 55 2.2e-05 17.0 0.1 1 1 1.5e-06 3.2e-05 16.5 0.1 2 32 21 51 21 56 0.89 # 33227 # 33484 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_36 - 160 HTH_3 PF01381.17 55 8.1e-05 15.2 0.2 1 2 0.0029 0.065 5.9 0.0 2 20 15 33 14 37 0.91 # 23146 # 23625 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_36 - 160 HTH_3 PF01381.17 55 8.1e-05 15.2 0.2 2 2 0.0013 0.029 7.0 0.0 1 23 96 118 96 120 0.89 # 23146 # 23625 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_67 - 202 HTH_23 PF13384.1 50 1.1e-07 24.2 0.2 1 1 6.1e-09 1.1e-07 24.2 0.2 10 42 166 198 160 201 0.92 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_52 - 86 HTH_23 PF13384.1 50 2.7e-06 19.7 0.2 1 1 2.6e-07 4.6e-06 19.0 0.2 12 38 23 49 19 56 0.84 # 33227 # 33484 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_31 - 89 HTH_23 PF13384.1 50 6.2e-06 18.6 0.0 1 1 5.3e-07 9.4e-06 18.0 0.0 16 39 38 64 33 68 0.83 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_69 - 254 HTH_23 PF13384.1 50 2.2e-05 16.8 0.1 1 1 3.1e-06 5.6e-05 15.5 0.1 4 45 4 47 1 50 0.86 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_45 - 83 HTH_23 PF13384.1 50 4e-05 16.0 0.0 1 1 4.4e-06 7.8e-05 15.1 0.0 15 34 10 31 6 40 0.81 # 28542 # 28790 # -1 # ID=1_45;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_67 - 202 HTH_7 PF02796.10 45 1.3e-05 17.7 0.0 1 1 4.4e-07 3.9e-05 16.3 0.0 13 38 165 190 156 190 0.93 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_73 - 514 Ribosomal_S27e PF01667.12 55 7.6e-05 15.0 0.8 1 1 8.6e-07 7.6e-05 15.0 0.8 5 33 72 100 69 105 0.90 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_45 - 83 HTH_19 PF12844.2 64 3.5e-08 26.2 0.0 1 1 1.7e-09 5.1e-08 25.7 0.0 8 45 10 47 8 56 0.86 # 28542 # 28790 # -1 # ID=1_45;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_52 - 86 HTH_19 PF12844.2 64 7.5e-06 18.7 0.0 1 1 3.5e-07 1e-05 18.3 0.0 5 35 21 51 21 60 0.91 # 33227 # 33484 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_31 - 89 HTH_19 PF12844.2 64 7.5e-05 15.5 0.0 1 1 3.4e-06 0.0001 15.1 0.0 4 39 33 69 30 73 0.85 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_73 - 514 zinc_ribbon_4 PF13717.1 36 0.0051 9.3 4.0 1 2 0.00044 0.039 6.5 0.1 1 12 73 84 73 87 0.82 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_73 - 514 zinc_ribbon_4 PF13717.1 36 0.0051 9.3 4.0 2 2 0.0063 0.56 2.8 0.0 5 14 96 105 95 113 0.81 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_67 - 202 HTH_29 PF13551.1 112 3.8e-05 16.6 0.5 1 2 0.0071 0.63 3.0 0.0 51 88 43 87 25 101 0.62 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_67 - 202 HTH_29 PF13551.1 112 3.8e-05 16.6 0.5 2 2 1.9e-05 0.0017 11.3 0.2 4 36 166 197 165 200 0.89 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_66 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 1 3 1.7e-05 0.0015 9.8 0.0 16 36 134 154 125 158 0.88 # 41125 # 43212 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_66 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 2 3 9.3e-05 0.0083 7.4 0.1 93 140 235 281 229 303 0.80 # 41125 # 43212 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_66 - 696 TrwB_AAD_bind PF10412.4 386 1.7e-06 19.6 0.9 3 3 0.083 7.4 -2.3 0.0 293 323 482 512 405 546 0.58 # 41125 # 43212 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_85 - 1017 AAA_18 PF13238.1 129 4.9e-05 16.4 0.1 1 1 4.2e-06 0.00037 13.6 0.0 2 19 492 509 492 562 0.79 # 65634 # 68684 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_56 - 248 IMS_HHH PF11798.3 32 0.00024 13.9 0.1 1 1 9e-06 0.0008 12.3 0.1 14 32 7 25 5 25 0.95 # 34766 # 35509 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.594 1_10 - 388 DUF87 PF01935.12 229 8.3e-05 15.2 0.0 1 1 1.8e-06 0.00016 14.2 0.0 28 45 157 174 155 188 0.89 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_67 - 202 HTH_28 PF13518.1 52 2.3e-08 26.7 0.4 1 1 2.4e-09 5.4e-08 25.5 0.4 4 38 165 199 165 201 0.92 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_69 - 254 HTH_28 PF13518.1 52 3.6e-05 16.5 0.0 1 1 3.8e-06 8.4e-05 15.3 0.0 4 41 9 48 6 53 0.89 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_31 - 89 HTH_28 PF13518.1 52 5.5e-05 15.9 0.0 1 1 3.5e-06 7.7e-05 15.4 0.0 7 34 34 64 33 68 0.82 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_45 - 83 HTH_28 PF13518.1 52 0.00037 13.3 0.1 1 1 3.6e-05 0.00081 12.2 0.1 8 29 8 31 6 35 0.78 # 28542 # 28790 # -1 # ID=1_45;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_69 - 254 HTH_24 PF13412.1 48 3.1e-07 22.5 0.4 1 1 1.9e-08 8.4e-07 21.1 0.2 5 47 7 49 5 50 0.95 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_67 - 202 HTH_24 PF13412.1 48 2.1e-05 16.6 0.0 1 1 1e-06 4.6e-05 15.6 0.0 16 40 172 196 168 196 0.89 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_67 - 202 HTH_10 PF04967.7 53 0.00039 12.8 0.0 1 1 1.3e-05 0.0012 11.3 0.0 27 46 177 196 173 199 0.86 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 388 Miro PF08477.8 119 0.00084 12.6 0.0 1 1 2.1e-05 0.0019 11.5 0.0 4 28 157 186 156 220 0.72 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_45 - 83 HTH_31 PF13560.1 64 1.7e-09 30.6 0.9 1 1 1.2e-10 2.2e-09 30.2 0.9 9 56 9 55 6 72 0.90 # 28542 # 28790 # -1 # ID=1_45;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.574 1_36 - 160 HTH_31 PF13560.1 64 1.3e-07 24.5 1.6 1 2 0.0061 0.11 5.6 0.1 6 33 14 41 12 47 0.88 # 23146 # 23625 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_36 - 160 HTH_31 PF13560.1 64 1.3e-07 24.5 1.6 2 2 7.5e-07 1.3e-05 18.1 0.3 4 39 94 129 91 135 0.88 # 23146 # 23625 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_52 - 86 HTH_31 PF13560.1 64 2.8e-07 23.5 0.7 1 1 1.6e-08 2.8e-07 23.5 0.7 7 36 21 50 6 58 0.90 # 33227 # 33484 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_31 - 89 HTH_31 PF13560.1 64 1.8e-06 20.9 0.0 1 1 1.4e-07 2.5e-06 20.4 0.0 2 42 29 69 28 80 0.84 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_67 - 202 HTH_31 PF13560.1 64 0.0021 11.0 4.3 1 1 0.00025 0.0044 10.0 0.5 11 39 170 198 142 201 0.90 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_85 - 1017 DUF2075 PF09848.4 352 0.00033 12.4 0.0 1 1 1e-05 0.00093 10.9 0.0 5 22 492 509 489 526 0.84 # 65634 # 68684 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_10 - 388 T2SE PF00437.15 272 1.9e-23 75.4 0.0 1 1 3.4e-25 3e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_40 - 325 StbA PF06406.6 318 5.5e-157 514.3 0.2 1 1 7e-159 6.2e-157 514.1 0.2 1 318 1 322 1 322 0.99 # 25261 # 26235 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_10 - 388 NACHT PF05729.7 166 0.0003 13.2 0.0 1 1 6.6e-06 0.00059 12.3 0.0 4 29 156 181 154 188 0.83 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_85 - 1017 AAA_17 PF13207.1 121 4e-05 17.2 0.0 1 1 2.9e-06 0.00026 14.6 0.0 3 28 492 523 492 587 0.67 # 65634 # 68684 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_73 - 514 DZR PF12773.2 50 0.0053 9.4 4.8 1 2 0.0017 0.15 4.8 3.4 1 20 77 101 64 109 0.61 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_73 - 514 DZR PF12773.2 50 0.0053 9.4 4.8 2 2 0.0053 0.47 3.1 0.0 13 23 448 458 441 487 0.75 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_10 - 388 AAA_25 PF13481.1 194 5e-06 18.8 0.0 1 1 1.1e-07 1e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_22 - 147 RepA_N PF06970.6 76 0.00075 12.1 0.0 1 1 1.7e-05 0.0015 11.1 0.0 15 44 56 85 54 90 0.92 # 16378 # 16818 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.556 1_40 - 325 Hydant_A_N PF05378.8 176 0.00089 11.5 3.9 1 4 0.08 7.1 -1.2 0.0 1 19 2 20 2 48 0.82 # 25261 # 26235 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_40 - 325 Hydant_A_N PF05378.8 176 0.00089 11.5 3.9 2 4 0.049 4.4 -0.5 0.0 108 154 38 86 15 103 0.67 # 25261 # 26235 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_40 - 325 Hydant_A_N PF05378.8 176 0.00089 11.5 3.9 3 4 0.057 5.1 -0.7 0.0 95 129 113 147 89 153 0.76 # 25261 # 26235 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_40 - 325 Hydant_A_N PF05378.8 176 0.00089 11.5 3.9 4 4 3.6e-05 0.0032 9.7 0.2 2 51 170 217 169 226 0.82 # 25261 # 26235 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_67 - 202 HTH_Tnp_ISL3 PF13542.1 52 3.7e-05 15.7 0.2 1 1 2e-06 8.9e-05 14.4 0.2 29 51 175 197 166 198 0.85 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_31 - 89 HTH_Tnp_ISL3 PF13542.1 52 0.00033 12.6 0.0 1 1 1e-05 0.00044 12.2 0.0 19 49 35 64 33 65 0.91 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_69 - 254 MerR PF00376.18 38 0.00071 11.9 0.3 1 2 6.2e-05 0.0055 9.1 0.1 1 18 21 38 21 53 0.80 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_69 - 254 MerR PF00376.18 38 0.00071 11.9 0.3 2 2 0.078 7 -0.8 0.0 13 19 158 164 157 165 0.85 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_67 - 202 CENP-B_N PF04218.8 53 0.00014 14.0 0.0 1 1 7.9e-06 0.00035 12.8 0.0 21 45 172 196 165 199 0.87 # 43795 # 44400 # -1 # ID=1_67;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.559 1_31 - 89 CENP-B_N PF04218.8 53 0.0013 11.0 0.0 1 1 3.8e-05 0.0017 10.6 0.0 24 49 44 69 34 72 0.88 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_69 - 254 PaaX PF07848.7 70 2.6e-06 20.1 0.2 1 1 5.5e-08 4.9e-06 19.3 0.2 15 68 14 64 10 66 0.85 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_10 - 388 Ribosomal_S5 PF00333.15 67 2.8e-05 16.6 0.1 1 2 0.00093 0.082 5.5 0.0 26 45 84 103 77 114 0.83 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_10 - 388 Ribosomal_S5 PF00333.15 67 2.8e-05 16.6 0.1 2 2 0.00012 0.01 8.4 0.0 21 54 242 274 230 278 0.91 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_10 - 388 RNA_helicase PF00910.17 107 0.00098 12.1 0.0 1 1 2.5e-05 0.0022 10.9 0.0 3 26 157 180 156 197 0.81 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_73 - 514 zinc_ribbon_5 PF13719.1 37 0.0039 9.6 3.9 1 2 0.0004 0.035 6.5 0.1 1 12 73 84 73 87 0.82 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_73 - 514 zinc_ribbon_5 PF13719.1 37 0.0039 9.6 3.9 2 2 0.0051 0.46 3.0 0.0 5 14 96 105 95 113 0.81 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_52 - 86 Mor PF08765.6 108 0.00033 13.2 0.0 1 1 4.7e-06 0.00042 12.9 0.0 71 92 27 48 18 57 0.85 # 33227 # 33484 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_31 - 89 Phage_CII PF05269.6 91 0.00064 12.5 0.0 1 1 9.2e-06 0.00082 12.2 0.0 17 45 36 64 32 81 0.83 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_10 - 388 ATP_bind_1 PF03029.12 238 0.00072 11.8 0.0 1 1 1.3e-05 0.0012 11.2 0.0 1 25 157 181 157 191 0.84 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_6 - 66 DDE_Tnp_IS240 PF13610.1 140 0.00023 13.9 0.0 1 1 2.8e-06 0.00025 13.8 0.0 29 64 18 52 5 58 0.83 # 3986 # 4183 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_52 - 86 HTH_26 PF13443.1 63 7.2e-05 15.7 0.0 1 1 2.7e-06 0.00012 15.0 0.0 4 34 22 52 21 56 0.90 # 33227 # 33484 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.667 1_31 - 89 HTH_26 PF13443.1 63 0.00024 14.1 0.0 1 1 7.2e-06 0.00032 13.7 0.0 11 47 43 78 33 82 0.90 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_73 - 514 Zn-ribbon_8 PF09723.5 42 0.00024 13.8 7.4 1 2 0.00023 0.021 7.6 5.0 7 35 76 102 75 106 0.81 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_73 - 514 Zn-ribbon_8 PF09723.5 42 0.00024 13.8 7.4 2 2 0.00078 0.07 5.9 0.0 8 24 450 466 437 470 0.75 # 51167 # 52708 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_69 - 254 HTH_11 PF08279.7 55 8.4e-13 40.6 0.3 1 1 1.7e-14 1.5e-12 39.8 0.3 1 53 6 55 6 57 0.89 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_71 - 308 DDE_Tnp_1_5 PF13737.1 112 2.9e-47 152.2 0.1 1 2 5e-48 4.5e-46 148.4 0.0 1 112 19 130 19 130 0.96 # 49308 # 50231 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_71 - 308 DDE_Tnp_1_5 PF13737.1 112 2.9e-47 152.2 0.1 2 2 0.031 2.8 0.9 0.0 42 68 263 291 234 297 0.82 # 49308 # 50231 # 1 # ID=1_71;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.534 1_69 - 254 MarR_2 PF12802.2 62 1.4e-07 23.9 2.4 1 2 3.5e-09 3.2e-07 22.8 0.7 8 54 8 52 5 65 0.92 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_69 - 254 MarR_2 PF12802.2 62 1.4e-07 23.9 2.4 2 2 0.087 7.7 -0.9 0.0 26 44 227 245 219 248 0.73 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_69 - 254 HTH_5 PF01022.15 47 1.8e-05 17.1 0.4 1 1 9.3e-07 8.3e-05 15.0 0.2 7 45 10 49 8 51 0.90 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_69 - 254 TrmB PF01978.14 68 2.1e-05 17.0 0.2 1 1 4.7e-07 4.2e-05 16.0 0.2 15 54 11 51 10 62 0.90 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_31 - 89 HTH_Crp_2 PF13545.1 76 0.0004 12.9 0.0 1 1 6.6e-06 0.00059 12.4 0.0 26 50 40 64 32 65 0.88 # 21060 # 21326 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.584 1_69 - 254 HTH_Mga PF08280.6 59 0.00012 14.6 0.0 1 1 3.1e-06 0.00028 13.4 0.0 4 44 4 44 3 50 0.94 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_69 - 254 DUF1670 PF07900.6 220 9.4e-05 14.4 0.1 1 1 1.5e-06 0.00014 13.9 0.1 101 203 15 117 7 124 0.79 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_85 - 1017 AAA_10 PF12846.2 304 6.7e-42 136.6 0.0 1 1 4.6e-43 1.4e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 65634 # 68684 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_66 - 696 AAA_10 PF12846.2 304 5.6e-10 31.8 0.0 1 1 2.8e-11 8.3e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 41125 # 43212 # 1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_10 - 388 AAA_10 PF12846.2 304 1.1e-06 21.0 0.0 1 1 2.1e-07 6.2e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 1_69 - 254 HTH_20 PF12840.2 61 5.2e-07 22.2 1.5 1 1 1.4e-08 1.2e-06 21.0 0.1 14 57 9 52 7 55 0.93 # 47500 # 48261 # 1 # ID=1_69;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_74 - 280 Pterin_bind PF00809.17 210 2.3e-58 189.7 0.0 1 1 3e-60 2.7e-58 189.5 0.0 1 210 7 216 7 216 0.98 # 53113 # 53952 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.617 1_19 - 145 SSB PF00436.20 104 6.5e-32 102.3 0.2 1 1 8.4e-34 7.5e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 15168 # 15602 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_10 - 388 GTP_EFTU PF00009.22 188 0.00097 11.3 0.0 1 1 2e-05 0.0017 10.5 0.0 8 34 157 183 155 195 0.87 # 8242 # 9405 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.515 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/be0da429-b42a-4474-a0e7-e6f03aef73a0 # Target file: checkm_output/bins/pm1316/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1316/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/be0da429-b42a-4474-a0e7-e6f03aef73a0 checkm_output/bins/pm1316/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:40:10 2017 # [ok]