# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 141 HTH_22 PF13309.1 64 1.9e-05 13.1 0.1 1 1 1e-05 5e-05 11.8 0.1 44 63 5 24 2 25 0.89 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_2 - 141 DUF134 PF02001.11 106 1e-06 17.4 0.1 1 1 3.1e-07 1.5e-06 16.8 0.1 59 105 5 51 2 52 0.92 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_4 - 202 HTH_38 PF13936.1 44 2.5e-09 25.4 1.0 1 1 1.7e-09 8.7e-09 23.6 0.0 15 44 168 197 160 197 0.93 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 141 HTH_8 PF02954.14 42 8.5e-06 14.1 0.0 1 1 3.4e-06 1.7e-05 13.1 0.0 19 37 4 22 2 24 0.89 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_4 - 202 Sigma70_r4_2 PF08281.7 54 6.5e-08 20.8 0.0 1 1 4e-08 2e-07 19.2 0.0 17 44 165 191 165 199 0.86 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 202 GerE PF00196.14 58 1.5e-06 16.3 0.0 1 1 5.1e-07 2.6e-06 15.5 0.0 11 35 166 190 165 201 0.88 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 141 NUMOD1 PF07453.8 37 2.7e-07 19.1 0.1 1 1 3.2e-07 1.6e-06 16.7 0.0 18 37 5 24 4 24 0.94 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_2 - 141 HTH_Tnp_IS630 PF01710.11 120 2.2e-06 16.1 0.0 1 1 8.4e-07 4.2e-06 15.2 0.0 20 62 5 49 2 53 0.83 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_4 - 202 HTH_23 PF13384.1 50 6.1e-09 24.2 0.2 1 1 2.4e-09 6.1e-09 24.2 0.2 10 42 166 198 160 201 0.92 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 141 HTH_23 PF13384.1 50 3.8e-06 15.3 0.0 1 1 3.5e-06 8.6e-06 14.1 0.0 18 38 4 24 1 26 0.87 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_4 - 202 HTH_7 PF02796.10 45 7.5e-07 17.7 0.0 1 1 8.7e-07 2.2e-06 16.3 0.0 13 38 165 190 156 190 0.93 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 141 HTH_7 PF02796.10 45 7.1e-06 14.6 0.5 1 1 6.4e-06 1.6e-05 13.5 0.1 23 43 5 25 4 27 0.89 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_4 - 202 HTH_29 PF13551.1 112 2.1e-06 16.6 0.5 1 2 0.014 0.036 3.0 0.0 51 88 43 87 25 101 0.62 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 202 HTH_29 PF13551.1 112 2.1e-06 16.6 0.5 2 2 3.8e-05 9.5e-05 11.3 0.2 4 36 166 197 165 200 0.89 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 141 HTH_29 PF13551.1 112 2.3e-05 13.2 0.1 1 1 2.9e-05 7.3e-05 11.7 0.0 12 34 4 25 1 39 0.90 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_2 - 141 DUF3853 PF12964.2 96 2.6e-06 15.9 0.1 1 1 9.4e-07 4.7e-06 15.1 0.1 48 90 6 50 3 55 0.86 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_4 - 202 HTH_28 PF13518.1 52 1.3e-09 26.7 0.4 1 1 1.2e-09 3.1e-09 25.5 0.4 4 38 165 199 165 201 0.92 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 141 HTH_28 PF13518.1 52 1.3e-06 17.2 0.1 1 1 1.9e-06 4.8e-06 15.3 0.0 13 34 4 25 2 29 0.91 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_4 - 202 HTH_24 PF13412.1 48 1.2e-06 16.6 0.0 1 1 5.2e-07 2.6e-06 15.6 0.0 16 40 172 196 168 196 0.89 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 202 HTH_10 PF04967.7 53 2.2e-05 12.8 0.0 1 1 1.3e-05 6.5e-05 11.3 0.0 27 46 177 196 173 199 0.86 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 202 HTH_31 PF13560.1 64 0.00012 11.0 4.3 1 2 0.023 0.11 1.5 0.1 15 38 23 56 16 77 0.73 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 202 HTH_31 PF13560.1 64 0.00012 11.0 4.3 2 2 4.9e-05 0.00025 10.0 0.5 11 39 170 198 142 201 0.90 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 202 HTH_Tnp_ISL3 PF13542.1 52 2.1e-06 15.7 0.2 1 1 1e-06 5e-06 14.4 0.2 29 51 175 197 166 198 0.85 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_4 - 202 CENP-B_N PF04218.8 53 7.9e-06 14.0 0.0 1 1 3.9e-06 2e-05 12.8 0.0 21 45 172 196 165 199 0.87 # 4434 # 5039 # 1 # ID=1_4;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.561 1_2 - 141 HTH_17 PF12728.2 51 8.7e-12 33.9 0.0 1 1 3.2e-12 1.6e-11 33.1 0.0 3 43 5 49 4 54 0.83 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 1_2 - 141 Phage_AlpA PF05930.7 51 2.2e-05 12.9 0.0 1 1 7.8e-06 3.9e-05 12.1 0.0 4 28 4 28 1 30 0.88 # 906 # 1328 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.426 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/c6413e1a-1a95-4d61-9044-56f2d059bf5e # Target file: checkm_output/bins/pm1305/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1305/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c6413e1a-1a95-4d61-9044-56f2d059bf5e checkm_output/bins/pm1305/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:39:50 2017 # [ok]