# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 71 Zn_Tnp_IS1 PF03811.8 36 1.3e-22 69.6 8.6 1 1 1.2e-23 2.1e-22 68.9 8.6 1 36 1 36 1 36 0.99 # 10590 # 10802 # 1 # ID=1_13;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_4 - 186 HTH_IclR PF09339.5 52 2.2e-06 17.7 0.2 1 1 9.2e-07 8.2e-06 15.9 0.0 15 40 155 180 151 181 0.85 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_9 - 135 HTH_IclR PF09339.5 52 7.7e-06 16.0 0.3 1 1 1.6e-06 1.5e-05 15.1 0.3 19 40 4 25 1 26 0.90 # 8076 # 8480 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_4 - 186 HTH_22 PF13309.1 64 5.1e-05 13.6 1.5 1 1 1.2e-05 0.00021 11.6 0.1 35 63 156 179 143 180 0.76 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_40 PF14493.1 91 0.00012 12.8 0.6 1 1 2.1e-05 0.00039 11.2 0.1 7 32 152 177 147 183 0.89 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_38 PF13936.1 44 5.6e-07 19.6 1.4 1 1 5.9e-08 1.1e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_9 - 135 MerR_1 PF13411.1 69 1.7e-05 15.1 0.3 1 1 2.1e-06 3.7e-05 14.0 0.0 2 34 5 37 4 49 0.90 # 8076 # 8480 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_4 - 186 HTH_Tnp_IS630 PF01710.11 120 1.7e-05 15.0 0.0 1 1 1.9e-06 3.5e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_23 PF13384.1 50 7.9e-06 16.0 0.3 1 1 8.8e-07 7.9e-06 16.0 0.3 5 39 146 180 142 184 0.87 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_9 - 135 HTH_23 PF13384.1 50 2.3e-05 14.6 0.1 1 1 5.7e-06 5.1e-05 13.4 0.1 18 40 4 26 1 27 0.92 # 8076 # 8480 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_4 - 186 HTH_7 PF02796.10 45 4.2e-14 42.7 1.1 1 1 5.1e-15 9.3e-14 41.6 0.1 1 44 141 181 141 182 0.97 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_13 - 71 zinc_ribbon_4 PF13717.1 36 3.3e-05 14.1 4.4 1 1 3.9e-06 7e-05 13.1 4.4 5 35 8 39 5 40 0.84 # 10590 # 10802 # 1 # ID=1_13;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_4 - 186 HTH_29 PF13551.1 112 1.9e-05 15.3 0.6 1 2 0.025 0.44 1.3 0.2 24 46 114 136 88 153 0.67 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_29 PF13551.1 112 1.9e-05 15.3 0.6 2 2 1e-05 0.00018 12.2 0.0 4 35 151 181 148 184 0.90 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_12 - 183 IMS_HHH PF11798.3 32 0.00019 12.1 0.0 1 1 2e-05 0.00037 11.2 0.0 13 27 150 164 148 169 0.85 # 9735 # 10283 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_13 - 71 HTH_Tnp_IS1 PF12759.2 46 3e-19 58.8 0.5 1 1 3.5e-20 6.3e-19 57.8 0.5 1 29 43 71 43 71 0.99 # 10590 # 10802 # 1 # ID=1_13;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_4 - 186 HTH_28 PF13518.1 52 2.4e-05 14.8 0.0 1 1 8.5e-06 7.6e-05 13.2 0.0 8 33 154 179 148 184 0.82 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_9 - 135 HTH_28 PF13518.1 52 4.8e-05 13.9 0.0 1 1 1.3e-05 0.00012 12.7 0.0 13 35 4 26 1 30 0.91 # 8076 # 8480 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 183 Transposase_20 PF02371.11 87 1.2e-12 38.3 0.1 1 1 1.2e-13 2.1e-12 37.6 0.1 1 36 147 182 147 182 0.97 # 9735 # 10283 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_9 - 135 MerR PF00376.18 38 1.6e-05 14.9 0.1 1 1 1.7e-06 3e-05 14.1 0.1 1 25 5 29 5 37 0.89 # 8076 # 8480 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_12 - 183 HHH PF00633.18 30 1.7e-05 15.0 0.3 1 1 2.3e-06 4.1e-05 13.8 0.3 14 29 151 166 150 167 0.86 # 9735 # 10283 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.528 1_6 - 74 Arg_repressor PF01316.16 70 5.1e-05 13.3 0.3 1 1 5e-06 9e-05 12.6 0.0 22 47 46 71 35 73 0.91 # 6273 # 6494 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.622 4_1 - 121 DDE_Tnp_IS1 PF03400.8 131 2.2e-48 154.1 0.1 1 1 1.5e-49 2.7e-48 153.9 0.1 41 131 30 120 21 120 0.98 # 117 # 479 # 1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.521 1_13 - 71 zinc_ribbon_5 PF13719.1 37 1.7e-05 14.9 4.2 1 1 2.1e-06 3.7e-05 13.8 4.2 5 36 8 40 5 41 0.81 # 10590 # 10802 # 1 # ID=1_13;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_9 - 135 HTH_17 PF12728.2 51 1.4e-08 25.5 0.2 1 1 1.8e-09 3.2e-08 24.3 0.1 3 33 5 34 4 49 0.84 # 8076 # 8480 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_13 - 71 Zn_Tnp_IS1595 PF12760.2 46 2.9e-05 14.4 5.5 1 1 2.8e-06 5e-05 13.6 5.5 19 46 6 38 3 38 0.77 # 10590 # 10802 # 1 # ID=1_13;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_4 - 186 TrmB PF01978.14 68 1e-05 15.8 0.0 1 1 1.1e-06 2e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_20 PF12840.2 61 3.6e-07 20.5 0.2 1 2 0.0037 0.067 3.6 0.0 33 52 8 27 4 28 0.91 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_20 PF12840.2 61 3.6e-07 20.5 0.2 2 2 9.1e-06 0.00016 12.0 0.1 3 43 110 177 108 180 0.91 # 4501 # 5058 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/773504b1-86d8-472f-84ed-d7a68ba1712b # Target file: checkm_output/bins/pm1304/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1304/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/773504b1-86d8-472f-84ed-d7a68ba1712b checkm_output/bins/pm1304/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:39:49 2017 # [ok]