# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_24 - 96 HTH_IclR PF09339.5 52 0.00045 12.0 0.1 1 1 1.4e-05 0.00077 11.2 0.1 5 38 31 66 28 66 0.82 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_42 - 429 Fe-ADH_2 PF13685.1 250 3.2e-05 15.4 0.1 1 1 9.1e-07 5.2e-05 14.7 0.1 74 109 94 131 43 139 0.73 # 36313 # 37599 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.566 1_24 - 96 HTH_38 PF13936.1 44 4.1e-05 15.2 0.1 1 1 1.1e-06 6.1e-05 14.7 0.1 11 39 36 65 30 66 0.89 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_24 - 96 MarR PF01047.17 59 2.6e-05 16.0 0.0 1 1 6.7e-07 3.8e-05 15.5 0.0 7 37 36 66 30 66 0.83 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_5 - 388 CbiA PF01656.18 195 1.2e-30 98.4 0.0 1 1 2.8e-32 1.6e-30 98.1 0.0 1 174 109 320 109 340 0.79 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_37 - 67 zf-ribbon_3 PF13248.1 26 0.00045 11.6 9.9 1 2 0.0003 0.017 6.6 1.5 5 20 6 20 3 21 0.58 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 zf-ribbon_3 PF13248.1 26 0.00045 11.6 9.9 2 2 4e-05 0.0023 9.4 1.7 4 21 33 49 30 49 0.89 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_17 - 203 TIGR00573 TIGR00573 217 4.7e-18 57.2 0.3 1 1 1.1e-18 6.2e-17 53.6 0.3 9 104 21 112 17 200 0.66 # 21983 # 22591 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_28 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.7 0.1 1 2 3e-13 1.7e-11 36.3 0.0 51 116 9 82 3 83 0.84 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_28 - 354 Methyltransf_26 PF13659.1 117 1.5e-16 52.7 0.1 2 2 2.5e-06 0.00014 14.0 0.0 1 35 309 342 309 351 0.91 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_5 - 388 MipZ PF09140.6 261 0.00029 12.0 0.1 1 2 8.1e-05 0.0046 8.1 0.0 4 47 110 153 107 165 0.87 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 MipZ PF09140.6 261 0.00029 12.0 0.1 2 2 0.0065 0.37 1.8 0.0 87 126 223 262 198 349 0.72 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_28 - 354 UPF0020 PF01170.13 180 3.2e-05 15.7 0.2 1 2 3.3e-05 0.0019 9.9 0.0 89 116 12 38 1 52 0.68 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_28 - 354 UPF0020 PF01170.13 180 3.2e-05 15.7 0.2 2 2 0.003 0.17 3.5 0.0 26 49 306 328 299 347 0.81 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_37 - 67 zinc-ribbons_6 PF07191.7 70 0.0019 10.1 5.8 1 2 0.00014 0.008 8.2 0.5 18 35 4 21 2 24 0.90 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 zinc-ribbons_6 PF07191.7 70 0.0019 10.1 5.8 2 2 0.0014 0.082 4.9 0.6 16 35 30 49 25 54 0.77 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_3 - 327 DDE_Tnp_1 PF01609.16 213 5.1e-36 116.3 0.1 1 1 1.6e-37 8.9e-36 115.5 0.1 5 212 138 312 135 313 0.90 # 7347 # 8327 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_24 - 96 Sigma70_r4 PF04545.11 50 9.5e-05 13.8 0.0 1 1 2.5e-06 0.00014 13.3 0.0 9 41 31 67 28 71 0.84 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_37 - 67 Ribosomal_L28 PF00830.14 61 0.0059 8.6 6.6 1 2 0.0036 0.2 3.7 0.7 2 25 5 29 4 31 0.77 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 Ribosomal_L28 PF00830.14 61 0.0059 8.6 6.6 2 2 0.00011 0.0065 8.5 0.7 2 26 33 57 32 59 0.85 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_24 - 96 HTH_37 PF13744.1 80 1.5e-12 39.3 0.0 1 1 3.3e-14 1.9e-12 39.0 0.0 18 78 33 92 23 94 0.94 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_13 - 1335 Herpes_ori_bp PF02399.10 824 2.1e-08 24.6 0.0 1 2 7.9e-08 4.5e-06 16.9 0.0 46 198 525 677 493 688 0.75 # 15691 # 19695 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_13 - 1335 Herpes_ori_bp PF02399.10 824 2.1e-08 24.6 0.0 2 2 0.00024 0.014 5.4 0.0 272 351 724 814 704 818 0.81 # 15691 # 19695 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 2_3 - 276 HTH_27 PF13463.1 68 0.00014 14.3 0.0 1 1 7.2e-06 0.00041 12.8 0.0 8 51 13 56 8 61 0.90 # 5018 # 5845 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_28 - 354 N6_N4_Mtase PF01555.13 231 9.2e-44 141.7 0.0 1 1 5.2e-45 3e-43 140.0 0.0 2 229 30 346 29 348 0.88 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_15 - 78 P22_Cro PF14549.1 60 1.2e-22 71.5 0.0 1 1 2.5e-24 1.4e-22 71.4 0.0 1 56 10 67 10 73 0.93 # 20611 # 20844 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.504 1_5 - 388 MerR_1 PF13411.1 69 7.3e-06 17.9 0.0 1 1 4.8e-07 2.7e-05 16.0 0.0 3 46 42 90 41 93 0.76 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_14 - 203 HTH_25 PF13413.1 62 3.1e-07 22.1 0.0 1 1 1.9e-08 5.5e-07 21.3 0.0 1 35 11 45 11 50 0.96 # 19946 # 20554 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 96 HTH_25 PF13413.1 62 2.2e-05 16.2 0.0 1 1 1.6e-06 4.6e-05 15.2 0.0 1 32 37 68 37 73 0.94 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_5 - 388 HTH_AraC PF00165.18 42 0.00024 13.1 0.0 1 1 8e-06 0.00046 12.2 0.0 5 30 36 61 33 62 0.87 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_39 - 570 Terminase_1 PF03354.10 477 1.6e-111 365.0 0.0 1 1 3.3e-113 1.9e-111 364.8 0.0 1 476 82 554 82 555 0.92 # 32137 # 33846 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.501 1_3 - 327 DDE_Tnp_1_3 PF13612.1 155 1.2e-10 33.5 0.0 1 1 4.2e-12 2.4e-10 32.5 0.0 5 151 137 292 134 296 0.72 # 7347 # 8327 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 3_1 - 384 Mnd1 PF03962.10 188 0.0075 8.0 10.8 1 2 0.0018 0.11 4.3 1.9 62 140 4 97 2 123 0.67 # 3 # 1154 # -1 # ID=3_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 3_1 - 384 Mnd1 PF03962.10 188 0.0075 8.0 10.8 2 2 8.1e-05 0.0046 8.7 0.7 61 128 307 374 305 381 0.89 # 3 # 1154 # -1 # ID=3_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.558 1_37 - 67 A2L_zn_ribbon PF08792.5 33 0.00013 13.6 2.0 1 2 0.00015 0.0083 7.8 0.1 1 11 1 11 1 13 0.84 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 A2L_zn_ribbon PF08792.5 33 0.00013 13.6 2.0 2 2 0.0009 0.052 5.3 0.2 5 11 33 39 29 41 0.81 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_14 - 203 HTH_3 PF01381.17 55 1.2e-13 42.9 0.1 1 1 1e-14 1.9e-13 42.2 0.1 1 55 12 66 12 66 0.98 # 19946 # 20554 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_24 - 96 HTH_3 PF01381.17 55 2.4e-13 41.9 0.1 1 1 2e-14 3.8e-13 41.3 0.1 1 49 38 86 38 91 0.94 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_5 - 388 HTH_3 PF01381.17 55 3.9e-05 15.6 0.0 1 1 4.8e-06 9.2e-05 14.4 0.0 13 39 43 69 32 70 0.87 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_24 - 96 HTH_23 PF13384.1 50 2.5e-05 16.0 0.0 1 1 1.2e-06 6.9e-05 14.6 0.0 9 36 33 65 26 67 0.80 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_24 - 96 HTH_19 PF12844.2 64 2.8e-11 35.5 0.0 1 1 1.4e-12 4e-11 35.0 0.0 2 55 36 89 35 92 0.91 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_14 - 203 HTH_19 PF12844.2 64 5.4e-09 28.2 0.0 1 1 3e-10 8.6e-09 27.5 0.0 1 57 9 65 9 72 0.86 # 19946 # 20554 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_37 - 67 zinc_ribbon_4 PF13717.1 36 0.0082 8.0 6.5 1 2 0.0074 0.42 2.6 0.2 27 32 5 10 3 13 0.84 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 zinc_ribbon_4 PF13717.1 36 0.0082 8.0 6.5 2 2 0.00011 0.0065 8.4 0.2 22 33 28 39 26 40 0.83 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_27 - 77 FeoC PF09012.5 69 9.1e-05 14.3 0.0 1 1 4.6e-06 0.00013 13.8 0.0 5 39 18 52 16 59 0.92 # 25352 # 25582 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 2_3 - 276 FeoC PF09012.5 69 0.00011 14.0 0.0 1 1 9.6e-06 0.00027 12.8 0.0 11 47 20 56 11 87 0.84 # 5018 # 5845 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_37 - 67 TIGR00595 TIGR00595 509 0.00022 11.6 4.8 1 1 4.8e-06 0.00027 11.3 4.8 216 264 3 52 1 58 0.87 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_5 - 388 TIGR01968 TIGR01968 261 5.4e-08 24.2 0.1 1 2 2.2e-05 0.0013 9.9 0.0 3 37 108 142 106 145 0.93 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 TIGR01968 TIGR01968 261 5.4e-08 24.2 0.1 2 2 4.6e-06 0.00026 12.1 0.1 102 143 225 265 220 275 0.83 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_3 - 327 DDE_Tnp_4 PF13359.1 158 1.6e-07 23.1 0.0 1 1 6e-09 3.4e-07 22.1 0.0 8 153 147 306 142 311 0.66 # 7347 # 8327 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_3 - 327 DDE_Tnp_1_6 PF13751.1 125 2.9e-09 29.1 0.2 1 1 1.3e-10 7.6e-09 27.8 0.2 58 123 252 314 244 316 0.81 # 7347 # 8327 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_17 - 203 TIGR01406 TIGR01406 231 8.8e-16 50.0 0.1 1 1 2.6e-17 1.5e-15 49.2 0.1 2 99 21 112 20 193 0.89 # 21983 # 22591 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_24 - 96 HTH_24 PF13412.1 48 5.4e-07 21.1 0.0 1 1 3.4e-08 9.6e-07 20.3 0.0 8 36 37 65 31 66 0.93 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_27 - 77 HTH_24 PF13412.1 48 2.5e-05 15.8 0.0 1 1 1.2e-06 3.3e-05 15.4 0.0 14 40 24 50 20 52 0.84 # 25352 # 25582 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_28 - 354 TIGR03534 TIGR03534 253 0.00021 12.6 0.2 1 1 1.4e-05 0.00081 10.7 0.1 136 173 6 47 1 102 0.74 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_24 - 96 HTH_31 PF13560.1 64 1.5e-12 39.7 0.0 1 1 1e-13 2e-12 39.4 0.0 4 57 36 88 33 92 0.94 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_14 - 203 HTH_31 PF13560.1 64 3.9e-10 32.0 0.1 1 1 3.4e-11 6.5e-10 31.3 0.1 3 55 9 60 8 65 0.93 # 19946 # 20554 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_5 - 388 HTH_31 PF13560.1 64 8.9e-06 18.0 0.0 1 1 2.8e-06 5.4e-05 15.5 0.0 8 46 33 70 31 73 0.88 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 2_2 - 198 Lambda_tail_I PF06805.7 82 4.9e-20 63.4 0.0 1 1 1.4e-21 7.7e-20 62.7 0.0 1 82 4 89 4 89 0.99 # 4408 # 5001 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.485 1_37 - 67 DZR PF12773.2 50 0.00012 14.0 7.1 1 1 8.9e-06 0.00051 12.0 7.1 14 47 5 48 2 50 0.82 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_5 - 388 VirC1 PF07015.6 231 1.4e-06 19.7 0.3 1 2 1.2e-05 0.00069 10.8 0.0 4 42 109 147 107 153 0.91 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 VirC1 PF07015.6 231 1.4e-06 19.7 0.3 2 2 0.00029 0.016 6.3 0.3 83 198 234 348 222 380 0.73 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 MerR PF00376.18 38 3.3e-07 22.0 0.0 1 2 1.5e-07 8.3e-06 17.5 0.0 2 28 42 68 41 71 0.95 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 MerR PF00376.18 38 3.3e-07 22.0 0.0 2 2 0.012 0.67 1.8 0.0 18 29 209 220 207 221 0.84 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_28 - 354 MTS PF05175.9 170 0.00016 13.2 0.0 1 1 6.1e-06 0.00035 12.1 0.0 73 154 3 97 1 107 0.73 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 1_37 - 67 zinc_ribbon_5 PF13719.1 37 0.011 7.5 6.4 1 2 0.0064 0.37 2.7 0.2 27 32 5 10 3 14 0.82 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 zinc_ribbon_5 PF13719.1 37 0.011 7.5 6.4 2 2 0.00015 0.0083 7.9 0.2 22 33 28 39 26 40 0.82 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_24 - 96 HTH_26 PF13443.1 63 1.5e-08 27.0 0.0 1 1 4.7e-10 2.7e-08 26.1 0.0 5 55 41 90 37 91 0.89 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_15 - 78 HTH_17 PF12728.2 51 8.9e-06 18.1 0.0 1 1 6.8e-07 1.9e-05 17.0 0.0 4 31 21 48 20 63 0.88 # 20611 # 20844 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.504 1_5 - 388 HTH_17 PF12728.2 51 0.00012 14.4 0.0 1 1 1.1e-05 0.0003 13.2 0.0 4 33 42 74 41 86 0.82 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_37 - 67 TF_Zn_Ribbon PF08271.7 43 0.0002 12.8 1.2 1 2 0.00065 0.037 5.6 0.2 20 28 4 12 2 22 0.76 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 TF_Zn_Ribbon PF08271.7 43 0.0002 12.8 1.2 2 2 0.00042 0.024 6.2 0.1 16 26 28 38 26 39 0.89 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_24 - 96 HTH_11 PF08279.7 55 0.00032 12.5 0.0 1 1 1.1e-05 0.00065 11.5 0.0 3 34 32 65 30 65 0.85 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_24 - 96 MarR_2 PF12802.2 62 1.2e-06 20.3 0.0 1 1 3e-08 1.7e-06 19.8 0.0 9 41 36 66 31 66 0.92 # 24356 # 24643 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.535 1_37 - 67 zinc_ribbon_2 PF13240.1 23 0.0031 9.2 11.2 1 3 0.00022 0.013 7.3 0.2 16 21 6 11 3 13 0.68 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 zinc_ribbon_2 PF13240.1 23 0.0031 9.2 11.2 2 3 0.00015 0.0086 7.8 0.3 16 20 34 38 29 41 0.71 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 zinc_ribbon_2 PF13240.1 23 0.0031 9.2 11.2 3 3 0.038 2.2 0.2 0.1 12 18 43 49 42 49 0.68 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_17 - 203 RNase_T PF00929.19 164 1.4e-27 89.1 0.2 1 1 2.3e-28 1.3e-26 85.9 0.2 1 163 22 192 22 193 0.91 # 21983 # 22591 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_13 - 1335 PCMT PF01135.14 210 8.2e-06 17.6 0.0 1 1 3.2e-07 1.8e-05 16.4 0.0 14 162 468 619 462 624 0.80 # 15691 # 19695 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.556 1_37 - 67 DNA_RNApol_7kD PF03604.8 32 2.4e-05 15.9 3.5 1 2 9.3e-05 0.0053 8.4 0.3 19 26 5 12 2 13 0.90 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_37 - 67 DNA_RNApol_7kD PF03604.8 32 2.4e-05 15.9 3.5 2 2 9.8e-05 0.0056 8.4 0.3 13 24 27 38 17 39 0.83 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 1_28 - 354 Methyltransf_11 PF08241.7 95 0.00014 14.5 0.0 1 1 3.6e-05 0.0021 10.7 0.0 69 95 53 79 1 79 0.67 # 25900 # 26961 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.525 2_3 - 276 RPA_C PF08784.6 102 4e-05 16.2 0.0 1 1 1.9e-06 0.00011 14.8 0.0 47 97 8 55 2 57 0.79 # 5018 # 5845 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.368 1_5 - 388 ArsA_ATPase PF02374.10 305 5.1e-07 21.0 0.1 1 2 5.6e-07 3.2e-05 15.1 0.0 5 36 111 142 108 151 0.88 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 ArsA_ATPase PF02374.10 305 5.1e-07 21.0 0.1 2 2 0.0024 0.13 3.3 0.0 125 136 233 244 223 254 0.84 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 1 2 1.5e-08 8.8e-07 21.1 0.0 2 50 108 156 107 196 0.91 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_5 - 388 AAA_31 PF13614.1 157 1.1e-08 27.3 0.0 2 2 0.0027 0.15 4.1 0.0 116 151 230 267 207 272 0.81 # 9432 # 10595 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.492 1_37 - 67 Zn_ribbon_recom PF13408.1 58 0.00036 12.9 10.6 1 1 8.6e-06 0.00049 12.5 10.6 6 42 4 50 2 60 0.78 # 31252 # 31452 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.567 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/afa3f9b1-b5cc-48a4-a1db-4fd684217dc4 # Target file: checkm_output/bins/pm1301/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1301/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/afa3f9b1-b5cc-48a4-a1db-4fd684217dc4 checkm_output/bins/pm1301/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:39:45 2017 # [ok]