# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 98 MarR PF01047.17 59 4e-05 12.9 0.0 1 1 8.7e-06 7.8e-05 12.0 0.0 18 39 24 45 21 46 0.89 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HxlR PF01638.12 91 6.9e-05 12.0 0.1 1 1 1.2e-05 0.00011 11.4 0.1 42 80 55 93 26 96 0.85 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 Phage_CI_repr PF07022.8 66 7.4e-05 12.4 0.0 1 1 1.6e-05 0.00014 11.5 0.0 16 52 27 63 16 72 0.82 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HTH_37 PF13744.1 80 1.4e-06 17.6 0.0 1 1 2.3e-07 2e-06 17.1 0.0 32 61 24 53 16 64 0.84 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HTH_3 PF01381.17 55 5.9e-13 38.1 0.0 1 1 1.1e-13 9.6e-13 37.4 0.0 12 53 26 67 16 69 0.91 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HTH_19 PF12844.2 64 3e-10 29.7 0.0 1 1 6e-11 5.4e-10 28.8 0.0 17 60 28 71 26 75 0.91 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HTH_31 PF13560.1 64 2.7e-07 20.3 0.0 1 1 4.2e-08 3.7e-07 19.9 0.0 18 55 27 63 11 72 0.88 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 Mga PF05043.8 87 6.9e-05 12.7 0.1 1 1 1.7e-05 0.00015 11.6 0.0 24 65 16 58 12 65 0.76 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HTH_26 PF13443.1 63 2.5e-07 20.5 0.0 1 1 5.2e-08 4.7e-07 19.6 0.0 10 49 23 61 15 67 0.83 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HTH_11 PF08279.7 55 4.9e-06 15.7 0.0 1 1 1.2e-06 1.1e-05 14.6 0.0 12 34 20 42 12 45 0.79 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 MarR_2 PF12802.2 62 1.8e-06 17.1 0.0 1 1 3.6e-07 3.3e-06 16.3 0.0 21 43 23 45 4 46 0.83 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HTH_5 PF01022.15 47 3.3e-06 16.3 0.5 1 2 5.6e-06 5e-05 12.5 0.0 19 34 27 42 25 45 0.88 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 HTH_5 PF01022.15 47 3.3e-06 16.3 0.5 2 2 0.013 0.12 1.8 0.1 9 25 76 92 75 93 0.66 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 LacI PF00356.16 46 1.2e-05 14.4 0.0 1 1 2.7e-06 2.4e-05 13.5 0.0 4 38 28 62 27 65 0.85 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_3 - 98 UPF0122 PF04297.9 101 5.3e-05 12.8 0.0 1 1 7.1e-06 6.4e-05 12.5 0.0 37 92 27 80 12 90 0.79 # 1134 # 1427 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/85ebd8a4-3ca2-4745-9fac-ea9329884e0e # Target file: checkm_output/bins/pm1294/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1294/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/85ebd8a4-3ca2-4745-9fac-ea9329884e0e checkm_output/bins/pm1294/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:39:32 2017 # [ok]