# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 98 MarR PF01047.17 59 4.9e-05 12.9 0.0 1 1 8.7e-06 9.5e-05 12.0 0.0 18 39 24 45 21 46 0.89 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HxlR PF01638.12 91 8.5e-05 12.0 0.1 1 1 1.2e-05 0.00013 11.4 0.1 42 80 55 93 26 96 0.85 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 Phage_CI_repr PF07022.8 66 9.1e-05 12.4 0.0 1 1 1.6e-05 0.00018 11.5 0.0 16 52 27 63 16 72 0.82 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HTH_37 PF13744.1 80 1.7e-06 17.6 0.0 1 1 2.3e-07 2.5e-06 17.1 0.0 32 61 24 53 16 64 0.84 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HTH_3 PF01381.17 55 7.2e-13 38.1 0.0 1 1 1.1e-13 1.2e-12 37.4 0.0 12 53 26 67 16 69 0.91 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HTH_19 PF12844.2 64 3.6e-10 29.7 0.0 1 1 6e-11 6.6e-10 28.8 0.0 17 60 28 71 26 75 0.91 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HTH_31 PF13560.1 64 3.3e-07 20.3 0.0 1 1 4.2e-08 4.6e-07 19.9 0.0 18 55 27 63 11 72 0.88 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 Mga PF05043.8 87 8.5e-05 12.7 0.1 1 1 1.7e-05 0.00019 11.6 0.0 24 65 16 58 12 65 0.76 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HTH_26 PF13443.1 63 3e-07 20.5 0.0 1 1 5.2e-08 5.7e-07 19.6 0.0 10 49 23 61 15 67 0.83 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HTH_11 PF08279.7 55 6e-06 15.7 0.0 1 1 1.2e-06 1.3e-05 14.6 0.0 12 34 20 42 12 45 0.79 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 MarR_2 PF12802.2 62 2.2e-06 17.1 0.0 1 1 3.6e-07 4e-06 16.3 0.0 21 43 23 45 4 46 0.83 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HTH_5 PF01022.15 47 4.1e-06 16.3 0.5 1 2 5.6e-06 6.1e-05 12.5 0.0 19 34 27 42 25 45 0.88 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 HTH_5 PF01022.15 47 4.1e-06 16.3 0.5 2 2 0.013 0.14 1.8 0.1 9 25 76 92 75 93 0.66 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 LacI PF00356.16 46 1.5e-05 14.4 0.0 1 1 2.7e-06 2.9e-05 13.5 0.0 4 38 28 62 27 65 0.85 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_9 - 98 UPF0122 PF04297.9 101 6.5e-05 12.8 0.0 1 1 7.1e-06 7.8e-05 12.5 0.0 37 92 27 80 12 90 0.79 # 4368 # 4661 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/7ce68803-85d2-4d99-b38a-12853b5924c2 # Target file: checkm_output/bins/pm1280/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1280/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7ce68803-85d2-4d99-b38a-12853b5924c2 checkm_output/bins/pm1280/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:39:12 2017 # [ok]