# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_21 - 341 KaiC PF06745.8 227 0.00015 12.5 0.0 1 2 0.07 3 -1.5 0.0 137 180 23 63 15 80 0.72 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 KaiC PF06745.8 227 0.00015 12.5 0.0 2 2 1.3e-05 0.00053 10.8 0.0 16 81 149 210 138 253 0.72 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 186 HTH_IclR PF09339.5 52 5.3e-06 17.7 0.2 1 1 4.6e-07 1.9e-05 15.9 0.0 15 40 155 180 151 181 0.85 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_21 - 341 ABC_tran PF00005.22 137 4.5e-05 15.5 0.0 1 1 2.3e-06 9.6e-05 14.4 0.0 8 49 149 190 146 211 0.82 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 186 HTH_22 PF13309.1 64 0.0001 13.8 1.2 1 1 1.2e-05 0.0005 11.6 0.1 35 63 156 179 143 180 0.76 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_40 PF14493.1 91 0.00027 12.9 0.6 1 1 2.1e-05 0.0009 11.2 0.1 7 32 152 177 147 183 0.89 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_38 PF13936.1 44 2.5e-06 18.7 0.0 1 1 5.9e-08 2.5e-06 18.7 0.0 9 41 147 179 145 182 0.93 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_37 - 216 CbiA PF01656.18 195 1.6e-05 16.0 2.7 1 1 9.1e-07 3.8e-05 14.8 2.7 3 174 6 156 4 174 0.67 # 29740 # 30387 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_21 - 341 AAA_23 PF13476.1 202 1.1e-06 20.7 0.0 1 2 0.037 1.6 0.7 0.0 70 133 34 92 7 110 0.78 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 AAA_23 PF13476.1 202 1.1e-06 20.7 0.0 2 2 2.7e-07 1.1e-05 17.5 0.0 19 39 152 172 142 174 0.91 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_37 - 216 AAA_24 PF13479.1 213 0.0002 12.7 0.3 1 1 6.8e-06 0.00029 12.1 0.3 10 76 9 82 1 152 0.90 # 29740 # 30387 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_21 - 341 Zeta_toxin PF06414.7 201 9.6e-05 13.2 0.0 1 1 5.7e-06 0.00024 11.9 0.0 14 43 150 179 139 230 0.82 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_37 - 216 MipZ PF09140.6 261 1.7e-08 25.5 5.5 1 2 0.00031 0.013 6.2 0.6 6 22 7 23 2 39 0.83 # 29740 # 30387 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_37 - 216 MipZ PF09140.6 261 1.7e-08 25.5 5.5 2 2 5.1e-09 2.1e-07 21.9 0.5 83 150 59 126 33 154 0.83 # 29740 # 30387 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_1 - 80 DivIC PF04977.10 80 1.9e-05 15.8 0.7 1 1 6.2e-07 2.6e-05 15.4 0.7 12 50 32 70 28 76 0.92 # 398 # 637 # -1 # ID=1_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_20 - 116 Phage_CI_repr PF07022.8 66 0.00017 13.3 0.1 1 1 8e-06 0.00034 12.4 0.0 3 59 8 64 6 71 0.86 # 16769 # 17116 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_24 - 276 KorB PF08535.5 93 0.00011 14.1 0.1 1 1 7.5e-06 0.00032 12.6 0.1 16 75 148 205 132 222 0.76 # 22135 # 22962 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_21 - 341 Herpes_ori_bp PF02399.10 824 0.00048 9.7 0.0 1 1 1.8e-05 0.00076 9.1 0.0 47 78 150 180 137 184 0.85 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 cobW PF02492.14 178 0.0001 13.5 0.0 1 1 6.8e-06 0.00029 12.0 0.0 3 29 155 180 153 197 0.71 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 AAA_16 PF13191.1 185 9.5e-07 20.6 0.0 1 1 4.1e-08 1.7e-06 19.8 0.0 20 57 148 185 138 228 0.75 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 AAA_22 PF13401.1 131 2.1e-05 16.4 0.0 1 1 1.1e-06 4.8e-05 15.2 0.0 2 67 150 228 148 259 0.68 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 AAA_29 PF13555.1 62 0.00014 13.1 0.0 1 1 8.8e-06 0.00037 11.7 0.0 21 40 150 169 144 170 0.82 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 186 HTH_Tnp_IS630 PF01710.11 120 3.9e-05 15.0 0.0 1 1 1.9e-06 8.2e-05 14.0 0.0 8 44 148 184 145 185 0.90 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 116 HTH_3 PF01381.17 55 3.2e-07 21.9 0.0 1 1 1.2e-08 5.1e-07 21.2 0.0 9 55 20 63 13 63 0.89 # 16769 # 17116 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_4 - 186 HTH_23 PF13384.1 50 1.9e-05 16.0 0.3 1 1 4.4e-07 1.9e-05 16.0 0.3 5 39 146 180 142 184 0.87 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_7 PF02796.10 45 7.7e-14 43.1 0.5 1 1 5.1e-15 2.2e-13 41.6 0.1 1 44 141 181 141 182 0.97 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 116 HTH_19 PF12844.2 64 5.6e-05 14.9 0.0 1 1 3e-06 0.00013 13.8 0.0 18 61 23 66 22 68 0.94 # 16769 # 17116 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_4 - 186 HTH_29 PF13551.1 112 4.5e-05 15.3 0.6 1 2 0.025 1 1.3 0.2 24 46 114 136 88 153 0.67 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_29 PF13551.1 112 4.5e-05 15.3 0.6 2 2 1e-05 0.00043 12.2 0.0 4 35 151 181 148 184 0.90 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_21 - 341 Arch_ATPase PF01637.13 234 3e-05 15.4 0.0 1 1 1.4e-06 5.7e-05 14.5 0.0 6 50 140 181 139 227 0.76 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 AAA_18 PF13238.1 129 3.3e-05 15.9 0.0 1 1 2e-06 8.2e-05 14.6 0.0 2 23 156 179 156 225 0.76 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 DUF258 PF03193.11 161 0.00025 12.0 0.0 1 1 1e-05 0.00043 11.2 0.0 22 69 138 186 123 196 0.81 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 186 HTH_28 PF13518.1 52 5.5e-05 14.9 0.0 1 1 4.2e-06 0.00018 13.2 0.0 8 33 154 179 148 184 0.82 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_20 - 116 HTH_31 PF13560.1 64 6.7e-05 14.8 0.0 1 2 9.3e-06 0.00039 12.3 0.0 19 60 22 62 6 64 0.85 # 16769 # 17116 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_20 - 116 HTH_31 PF13560.1 64 6.7e-05 14.8 0.0 2 2 0.064 2.7 0.1 0.0 28 45 79 97 73 99 0.80 # 16769 # 17116 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.457 1_19 - 79 DNA_pol3_beta_3 PF02768.10 121 6.4e-05 14.2 0.0 1 1 1.6e-06 6.9e-05 14.1 0.0 49 105 20 76 8 78 0.88 # 16468 # 16704 # 1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.451 1_21 - 341 T2SE PF00437.15 272 3.6e-48 155.4 0.0 1 1 9.8e-50 4.1e-48 155.2 0.0 7 270 31 302 25 304 0.94 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 NACHT PF05729.7 166 0.00036 11.9 0.0 1 1 1.8e-05 0.00078 10.8 0.0 3 28 155 180 153 233 0.64 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 UPF0079 PF02367.12 123 1.2e-06 19.9 0.0 1 1 4.9e-08 2.1e-06 19.1 0.0 7 44 144 181 138 186 0.85 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 AAA_17 PF13207.1 121 7.2e-06 18.5 0.0 1 1 3.4e-07 1.4e-05 17.6 0.0 1 64 154 226 154 275 0.61 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_21 - 341 KAP_NTPase PF07693.9 325 2.9e-05 14.8 0.0 1 1 1.6e-06 6.6e-05 13.6 0.0 18 53 150 183 135 225 0.78 # 17319 # 18341 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_4 - 186 TrmB PF01978.14 68 2.4e-05 15.7 0.0 1 1 1.1e-06 4.8e-05 14.8 0.0 19 44 155 180 150 181 0.89 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_17 - 860 AAA_10 PF12846.2 304 3.7e-34 110.1 0.0 1 1 1.6e-35 6.7e-34 109.3 0.0 7 303 480 770 475 771 0.91 # 13387 # 15966 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.422 1_4 - 186 HTH_20 PF12840.2 61 1.8e-06 19.4 0.1 1 2 0.0081 0.34 2.5 0.0 33 52 8 27 6 28 0.90 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 186 HTH_20 PF12840.2 61 1.8e-06 19.4 0.1 2 2 9.1e-06 0.00038 12.0 0.1 3 43 110 177 108 180 0.91 # 2385 # 2942 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_16 - 271 IPT PF01745.11 233 0.0018 9.1 4.9 1 2 0.019 0.78 0.5 0.1 125 173 41 90 28 99 0.75 # 12578 # 13390 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.403 1_16 - 271 IPT PF01745.11 233 0.0018 9.1 4.9 2 2 3.5e-05 0.0015 9.4 1.6 134 214 168 250 157 264 0.88 # 12578 # 13390 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.403 1_6 - 74 SSB PF00436.20 104 4.8e-27 85.6 0.0 1 1 2.7e-28 5.6e-27 85.4 0.0 1 65 6 71 6 72 0.98 # 6135 # 6356 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_2 - 77 SSB PF00436.20 104 8.1e-10 30.3 0.2 1 1 4.9e-11 1e-09 29.9 0.2 72 103 1 35 1 36 0.90 # 941 # 1171 # -1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.506 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/4e81d815-33bc-4b5e-b31a-4bad91fff635 # Target file: checkm_output/bins/pm1275/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1275/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4e81d815-33bc-4b5e-b31a-4bad91fff635 checkm_output/bins/pm1275/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:39:06 2017 # [ok]