# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 341 HTH_IclR PF09339.5 52 2e-07 20.1 0.1 1 1 5.9e-08 5.3e-07 18.8 0.1 15 40 14 39 13 40 0.95 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 ABC_tran PF00005.22 137 1.3e-05 15.0 0.3 1 2 1.2e-05 0.00011 12.1 0.0 8 30 99 121 93 136 0.86 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 ABC_tran PF00005.22 137 1.3e-05 15.0 0.3 2 2 0.051 0.46 0.3 0.0 107 134 143 172 126 174 0.74 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 HTH_22 PF13309.1 64 5.9e-05 12.4 0.0 1 1 1.3e-05 0.00012 11.4 0.0 46 64 21 39 10 39 0.89 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 HTH_AsnC-type PF13404.1 42 5.2e-05 12.3 0.0 1 1 1.5e-05 0.00013 11.0 0.0 18 36 18 36 15 40 0.91 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 rve_3 PF13683.1 67 3.8e-05 12.8 0.1 1 1 1.6e-05 0.00014 10.9 0.0 6 65 220 287 215 288 0.87 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 Sigma54_activat PF00158.21 168 1.2e-05 14.3 0.1 1 1 8.2e-06 7.4e-05 11.8 0.1 18 53 98 133 82 198 0.72 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 HTH_40 PF14493.1 91 1.6e-05 14.6 0.0 1 1 3.8e-06 3.4e-05 13.6 0.0 4 35 8 39 5 69 0.91 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 HTH_38 PF13936.1 44 1.2e-12 36.8 0.5 1 1 5.2e-13 4.6e-12 34.9 0.2 6 41 3 38 2 40 0.94 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 MarR PF01047.17 59 3e-05 13.3 0.0 1 1 6.3e-06 5.7e-05 12.4 0.0 9 37 32 60 30 64 0.85 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 TetR_N PF00440.18 47 6.3e-05 12.2 0.2 1 1 1.7e-05 0.00015 10.9 0.0 16 36 17 37 16 43 0.86 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 AAA_19 PF13245.1 76 3.8e-05 13.0 0.0 1 1 1.1e-05 9.5e-05 11.7 0.0 10 37 103 129 96 154 0.81 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 Sigma70_r4_2 PF08281.7 54 7.4e-09 24.6 0.0 1 1 3.7e-09 1.7e-08 23.4 0.0 25 48 16 39 12 40 0.94 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 Sigma70_r4_2 PF08281.7 54 3.6e-07 19.2 0.0 1 1 2.5e-07 1.1e-06 17.6 0.0 20 45 34 59 34 64 0.89 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 rve PF00665.21 120 1.3e-23 72.9 0.0 1 1 2.8e-24 2.5e-23 72.0 0.0 3 118 118 242 117 244 0.96 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 AFG1_ATPase PF03969.11 362 6.5e-06 14.6 0.2 1 1 2.8e-06 2.5e-05 12.6 0.2 63 216 103 254 43 259 0.72 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 Terminase_5 PF06056.7 58 5.4e-05 12.3 0.0 1 1 1.4e-05 0.00013 11.1 0.0 9 36 13 40 9 44 0.85 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 GerE PF00196.14 58 1.7e-07 20.1 0.0 1 1 3.6e-08 3.2e-07 19.2 0.0 17 39 16 38 8 40 0.89 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 Bac_DnaA PF00308.13 219 9.6e-11 31.2 0.0 1 1 1.6e-11 1.4e-10 30.6 0.0 37 136 105 202 75 207 0.85 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 100 Sigma70_r4 PF04545.11 50 4.4e-06 15.6 0.1 1 1 2.2e-06 9.7e-06 14.5 0.1 20 44 40 64 32 66 0.87 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 Sigma70_r4 PF04545.11 50 3.8e-05 12.6 0.2 1 1 4.1e-05 0.00018 10.4 0.1 19 39 16 36 9 39 0.88 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 DUF2316 PF10078.4 89 4.7e-05 12.9 0.0 1 1 1.1e-05 0.0001 11.9 0.0 20 82 14 85 5 91 0.82 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 AAA PF00004.24 132 1.7e-08 24.3 0.0 1 1 3.2e-09 2.9e-08 23.5 0.0 1 74 105 180 105 214 0.77 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 KorB PF08535.5 93 6.3e-05 12.7 0.0 1 1 2.9e-05 0.00026 10.7 0.0 2 30 16 44 15 108 0.78 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 HTH_37 PF13744.1 80 8.4e-18 53.6 1.3 1 1 1.1e-18 9.6e-18 53.4 1.3 3 79 9 87 7 88 0.93 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_2 - 100 HTH_25 PF13413.1 62 3.6e-07 19.4 0.2 1 1 7.6e-08 6.9e-07 18.5 0.2 2 34 32 64 31 88 0.79 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_7 - 65 cobW PF02492.14 178 2.8e-05 13.1 0.4 1 1 3.4e-06 3e-05 13.0 0.4 128 175 3 49 1 53 0.84 # 6486 # 6680 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 1_8 - 260 AAA_16 PF13191.1 185 5.9e-06 15.9 1.1 1 2 0.052 0.47 -0.1 0.2 115 142 18 46 3 97 0.57 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_16 PF13191.1 185 5.9e-06 15.9 1.1 2 2 3e-06 2.7e-05 13.7 0.1 21 41 99 119 86 151 0.78 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_22 PF13401.1 131 1.4e-07 21.3 0.2 1 2 2.2e-05 0.0002 11.0 0.0 5 21 103 119 99 131 0.83 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_22 PF13401.1 131 1.4e-07 21.3 0.2 2 2 0.00036 0.0033 7.1 0.0 88 103 154 181 126 203 0.66 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 TIGR00362 TIGR00362 437 5.4e-12 34.5 0.0 1 1 7.1e-13 6.4e-12 34.3 0.0 139 240 104 203 28 210 0.86 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 NUMOD1 PF07453.8 37 2.3e-05 13.8 0.1 1 1 4.9e-06 4.4e-05 12.9 0.1 20 37 21 38 19 38 0.91 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 AAA_29 PF13555.1 62 6.7e-05 12.0 0.0 1 1 1.4e-05 0.00013 11.1 0.0 19 59 98 139 89 141 0.72 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_28 PF13521.1 163 0.00011 11.7 1.8 1 2 0.063 0.57 -0.4 0.1 84 110 35 63 3 82 0.67 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_28 PF13521.1 163 0.00011 11.7 1.8 2 2 3e-05 0.00027 10.4 0.2 1 43 104 151 104 172 0.70 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_2 - 100 HTH_3 PF01381.17 55 1.3e-12 37.0 0.5 1 1 5e-13 2.2e-12 36.2 0.5 2 52 33 83 32 85 0.93 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 HTH_3 PF01381.17 55 8.2e-08 21.6 0.1 1 1 3.5e-08 1.6e-07 20.7 0.1 7 37 15 45 8 48 0.91 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 HTH_23 PF13384.1 50 7.4e-10 27.9 0.0 1 1 5.1e-10 2.3e-09 26.3 0.0 9 40 9 40 2 43 0.89 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 HTH_23 PF13384.1 50 2.1e-05 13.7 0.0 1 1 1.2e-05 5.3e-05 12.5 0.0 12 37 33 60 30 65 0.82 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 HTH_7 PF02796.10 45 2.3e-12 36.2 0.3 1 1 6.8e-13 6.1e-12 34.9 0.3 13 44 9 40 5 41 0.93 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 HTH_19 PF12844.2 64 1.2e-08 24.5 0.1 1 1 4.4e-09 2e-08 23.8 0.1 7 54 35 82 32 89 0.90 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 HTH_19 PF12844.2 64 1.4e-06 17.9 0.0 1 1 5.4e-07 2.4e-06 17.1 0.0 7 52 12 58 11 70 0.82 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 HTH_29 PF13551.1 112 2.3e-07 20.6 0.0 1 1 8e-08 7.2e-07 18.9 0.0 6 35 12 40 8 102 0.73 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 Arch_ATPase PF01637.13 234 8.4e-05 11.8 0.1 1 2 3.4e-05 0.00031 9.9 0.0 8 37 90 119 87 140 0.79 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 Arch_ATPase PF01637.13 234 8.4e-05 11.8 0.1 2 2 0.071 0.64 -0.9 0.0 121 150 167 192 144 203 0.68 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 PhoH PF02562.11 205 9.4e-09 24.2 0.1 1 1 3.6e-09 3.2e-08 22.5 0.0 11 48 94 131 83 159 0.83 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_5 PF07728.9 139 2.6e-06 16.7 0.3 1 2 3.6e-06 3.3e-05 13.2 0.2 1 74 104 173 104 180 0.72 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_5 PF07728.9 139 2.6e-06 16.7 0.3 2 2 0.053 0.48 -0.3 0.0 90 123 225 258 218 259 0.63 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 ResIII PF04851.10 184 3.3e-05 13.3 0.0 1 2 6.9e-05 0.00062 9.1 0.0 8 50 89 127 49 135 0.78 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 ResIII PF04851.10 184 3.3e-05 13.3 0.0 2 2 0.0088 0.079 2.3 0.0 112 163 131 181 127 202 0.72 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 DUF258 PF03193.11 161 1.2e-06 17.3 0.0 1 1 2e-07 1.8e-06 16.8 0.0 21 78 88 157 70 192 0.71 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 HTH_28 PF13518.1 52 4.3e-09 25.9 0.1 1 1 1.2e-09 1.1e-08 24.6 0.1 7 34 12 39 8 40 0.89 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 HTH_24 PF13412.1 48 4e-08 22.2 0.1 1 1 1.6e-08 7e-08 21.4 0.1 10 40 11 40 10 43 0.89 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 HTH_24 PF13412.1 48 1.5e-05 13.9 0.3 1 1 1.2e-05 5.3e-05 12.2 0.0 18 36 41 59 34 60 0.93 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 HTH_30 PF13556.1 59 8e-06 15.0 0.0 1 1 1.9e-06 1.7e-05 13.9 0.0 10 34 15 39 10 43 0.86 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 HTH_10 PF04967.7 53 2.1e-05 13.7 0.0 1 1 4.4e-06 4e-05 12.8 0.0 24 45 18 39 15 43 0.89 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 HTH_31 PF13560.1 64 4.4e-13 38.9 0.0 1 1 1.5e-13 6.5e-13 38.3 0.0 6 56 32 81 31 90 0.92 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 HTH_31 PF13560.1 64 2.5e-06 17.2 0.0 1 1 1.4e-06 6.2e-06 16.0 0.0 12 54 15 60 13 61 0.85 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 HTH_6 PF01418.12 77 2.6e-06 16.7 0.1 1 1 3.9e-07 3.5e-06 16.3 0.1 17 56 23 62 6 73 0.89 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_8 - 260 AAA_25 PF13481.1 194 2.2e-06 16.6 0.0 1 1 4.1e-07 3.7e-06 15.9 0.0 22 58 90 127 71 183 0.79 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 RuvB_N PF05496.7 234 3.3e-05 12.5 0.0 1 1 6.5e-06 5.8e-05 11.7 0.0 50 119 102 182 92 190 0.65 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_14 PF13173.1 128 1.1e-07 21.4 0.0 1 1 2.3e-08 2e-07 20.5 0.0 2 96 102 203 101 221 0.67 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 HTH_Tnp_ISL3 PF13542.1 52 1.9e-06 16.6 0.1 1 1 7.7e-07 7e-06 14.8 0.0 21 49 11 39 2 40 0.82 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 CENP-B_N PF04218.8 53 6.3e-06 15.2 0.1 1 1 1.3e-06 1.2e-05 14.3 0.1 20 47 15 42 2 43 0.83 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 NTPase_1 PF03266.10 168 2.1e-05 13.8 0.1 1 2 0.0016 0.015 4.5 0.1 2 30 105 133 104 153 0.83 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 NTPase_1 PF03266.10 168 2.1e-05 13.8 0.1 2 2 0.00025 0.0022 7.2 0.0 88 112 157 181 144 204 0.72 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 GcrA PF07750.6 162 1e-05 15.3 0.0 1 1 2.4e-06 2.2e-05 14.2 0.0 6 36 5 34 2 51 0.93 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 HTH_26 PF13443.1 63 1.5e-07 21.1 0.0 1 1 6.7e-08 3e-07 20.2 0.0 4 41 11 48 10 58 0.90 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 HTH_26 PF13443.1 63 2e-06 17.6 0.1 1 1 7.9e-07 3.5e-06 16.7 0.1 4 45 34 74 32 81 0.81 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 HTH_17 PF12728.2 51 0.00011 12.1 0.9 1 1 2.5e-05 0.00023 11.0 0.1 6 26 22 43 18 86 0.88 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 HTH_11 PF08279.7 55 1.3e-07 20.8 0.1 1 1 3.5e-08 3.2e-07 19.5 0.1 8 37 12 39 5 40 0.80 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_2 - 100 MarR_2 PF12802.2 62 1.4e-05 14.3 0.1 1 1 5.2e-06 4.7e-05 12.6 0.1 21 41 40 60 2 63 0.85 # 1516 # 1815 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_9 - 341 TrmB PF01978.14 68 2.3e-05 13.6 0.0 1 1 5.6e-06 5.1e-05 12.5 0.0 16 44 11 39 10 40 0.93 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_9 - 341 DUF1670 PF07900.6 220 8.7e-05 11.3 0.1 1 1 1.8e-05 0.00016 10.4 0.1 189 219 9 39 4 40 0.92 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 AAA_10 PF12846.2 304 7.1e-07 18.3 0.7 1 3 0.028 0.25 0.1 0.0 127 169 38 82 8 95 0.68 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_10 PF12846.2 304 7.1e-07 18.3 0.7 2 3 9.5e-07 8.6e-06 14.8 0.1 1 33 102 134 102 171 0.89 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 AAA_10 PF12846.2 304 7.1e-07 18.3 0.7 3 3 0.024 0.22 0.3 0.0 202 247 142 192 134 202 0.68 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_9 - 341 HTH_20 PF12840.2 61 3.4e-05 13.2 0.0 1 1 8.2e-06 7.4e-05 12.1 0.0 19 46 13 39 10 40 0.89 # 8496 # 9518 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 260 IstB_IS21 PF01695.12 178 4.1e-74 237.3 0.1 1 2 0.049 0.44 -0.6 0.0 64 97 25 57 24 61 0.64 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_8 - 260 IstB_IS21 PF01695.12 178 4.1e-74 237.3 0.1 2 2 9.8e-75 8.8e-74 236.2 0.1 1 178 56 235 56 235 0.98 # 7717 # 8496 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_7 - 65 Phe_tRNA-synt_N PF02912.13 73 2.6e-05 13.5 0.1 1 1 4.4e-06 4e-05 12.9 0.1 26 61 22 57 21 61 0.94 # 6486 # 6680 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.497 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/47d56fbc-378e-441b-ae47-c1d29c0624d9 # Target file: checkm_output/bins/pm127/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm127/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/47d56fbc-378e-441b-ae47-c1d29c0624d9 checkm_output/bins/pm127/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:39:00 2017 # [ok]