# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 64 HTH_IclR PF09339.5 52 3.6e-07 19.3 0.0 1 1 6.5e-08 5.8e-07 18.6 0.0 15 40 33 58 29 59 0.86 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_9 - 64 HTH_22 PF13309.1 64 4.8e-06 15.9 0.2 1 1 1.6e-06 1.4e-05 14.4 0.2 29 63 28 57 21 58 0.77 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_9 - 64 HTH_40 PF14493.1 91 1.5e-05 14.8 0.1 1 1 2.6e-06 2.3e-05 14.1 0.1 7 33 30 56 25 61 0.89 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_9 - 64 HTH_38 PF13936.1 44 4.4e-08 22.2 0.0 1 1 6.6e-09 6e-08 21.8 0.0 9 41 25 57 23 60 0.93 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_2 - 235 rve PF00665.21 120 1.9e-15 46.6 0.1 1 2 0.015 0.13 1.9 0.0 78 102 27 49 6 54 0.84 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_2 - 235 rve PF00665.21 120 1.9e-15 46.6 0.1 2 2 3.9e-15 3.5e-14 42.5 0.0 9 119 75 182 70 183 0.90 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_2 - 235 HTH_Tnp_1 PF01527.15 76 2.1e-05 14.0 0.3 1 1 5.4e-06 4.8e-05 12.9 0.3 4 51 6 58 4 63 0.79 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 64 GerE PF00196.14 58 1.5e-05 13.8 0.1 1 1 2.4e-06 2.2e-05 13.3 0.1 11 35 29 53 27 57 0.93 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_2 - 235 DDE_3 PF13358.1 146 5.8e-05 12.4 0.0 1 1 2e-05 0.00018 10.8 0.0 32 90 82 141 59 148 0.87 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 64 HTH_Tnp_IS630 PF01710.11 120 1.3e-06 17.6 0.0 1 1 1.9e-07 1.7e-06 17.2 0.0 8 44 26 62 21 63 0.91 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_2 - 235 HTH_32 PF13565.1 77 1.2e-07 22.0 0.2 1 1 5.6e-08 5.1e-07 20.0 0.0 26 76 5 50 2 51 0.83 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 64 HTH_23 PF13384.1 50 2.1e-07 20.1 0.3 1 1 8.8e-08 3.9e-07 19.2 0.3 5 39 24 58 20 62 0.87 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_2 - 235 HTH_23 PF13384.1 50 5.1e-07 18.9 0.6 1 2 0.032 0.14 1.6 0.0 7 27 11 35 7 36 0.69 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_2 - 235 HTH_23 PF13384.1 50 5.1e-07 18.9 0.6 2 2 3.7e-06 1.7e-05 14.0 0.1 28 42 41 55 40 62 0.87 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 64 HTH_7 PF02796.10 45 3.1e-15 45.4 0.1 1 1 4.7e-16 4.2e-15 45.0 0.1 1 44 19 59 19 60 0.97 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_9 - 64 HTH_29 PF13551.1 112 5.4e-06 16.1 0.1 1 1 1.1e-06 9.6e-06 15.3 0.0 4 35 29 59 26 63 0.90 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_2 - 235 DDE_Tnp_IS66 PF03050.9 271 1.8e-13 39.8 0.4 1 1 2.1e-14 1.9e-13 39.7 0.4 5 133 10 145 6 212 0.87 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 64 HTH_28 PF13518.1 52 2.8e-06 16.9 0.1 1 1 1.1e-06 4.8e-06 16.1 0.1 8 33 32 57 26 62 0.82 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_2 - 235 HTH_28 PF13518.1 52 2.3e-05 14.0 1.2 1 1 5.1e-06 2.3e-05 14.0 1.2 22 36 40 54 13 55 0.76 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 64 CENP-B_N PF04218.8 53 9.9e-06 14.5 0.1 1 1 8e-06 7.2e-05 11.8 0.1 26 47 40 61 25 62 0.86 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_2 - 235 DDE_Tnp_IS240 PF13610.1 140 3.2e-54 172.2 0.0 1 1 4.9e-55 4.5e-54 171.8 0.0 4 139 75 212 73 213 0.99 # 1231 # 1935 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.536 1_9 - 64 HTH_26 PF13443.1 63 2.1e-05 14.2 0.0 1 1 3.2e-06 2.9e-05 13.8 0.0 5 34 31 60 27 63 0.90 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_9 - 64 HTH_17 PF12728.2 51 1.3e-05 15.0 0.4 1 2 0.0068 0.061 3.2 0.0 25 43 11 29 7 32 0.79 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_9 - 64 HTH_17 PF12728.2 51 1.3e-05 15.0 0.4 2 2 4.4e-05 0.0004 10.2 0.1 6 23 41 58 39 61 0.87 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 1_9 - 64 TrmB PF01978.14 68 9.3e-07 18.1 0.0 1 1 1.3e-07 1.2e-06 17.8 0.0 19 44 33 58 22 59 0.89 # 7297 # 7488 # -1 # ID=1_9;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.510 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/616991a3-8cae-4f64-a04f-86ebf64247a4 # Target file: checkm_output/bins/pm1268/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1268/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/616991a3-8cae-4f64-a04f-86ebf64247a4 checkm_output/bins/pm1268/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:38:56 2017 # [ok]