# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_10 - 105 HTH_38 PF13936.1 44 5.1e-05 12.7 0.0 1 1 8.3e-06 9.2e-05 11.9 0.0 19 40 17 38 7 38 0.88 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 MarR PF01047.17 59 1.2e-05 14.8 0.0 1 1 2.2e-06 2.4e-05 13.9 0.0 18 37 19 38 11 40 0.92 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_5 - 195 DUF3584 PF12128.3 1201 4.9e-05 10.5 8.8 1 1 6e-06 6.6e-05 10.1 8.8 601 687 14 102 4 116 0.48 # 2338 # 2922 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_11 - 222 TetR_N PF00440.18 47 2.2e-20 62.0 0.1 1 1 6.9e-21 7.6e-20 60.2 0.0 2 47 12 57 11 57 0.97 # 8596 # 9261 # -1 # ID=1_11;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.592 1_8 - 317 Rep_3 PF01051.16 222 3.2e-46 147.4 11.2 1 1 2.9e-47 3.2e-46 147.4 11.2 3 221 4 221 2 222 0.91 # 5272 # 6222 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=3-4bp;gc_cont=0.364 1_9 - 308 DDE_Tnp_1 PF01609.16 213 3.5e-25 78.5 0.7 1 1 4.3e-26 4.7e-25 78.1 0.7 4 205 115 286 112 293 0.88 # 6992 # 7915 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 1_10 - 105 HTH_37 PF13744.1 80 7.1e-07 18.9 0.1 1 1 1.2e-07 1.3e-06 18.0 0.1 23 56 10 43 7 46 0.85 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 P22_Cro PF14549.1 60 5e-05 12.9 0.0 1 1 7.5e-06 8.2e-05 12.2 0.0 12 30 21 39 14 42 0.90 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 HTH_3 PF01381.17 55 2.2e-11 33.3 0.0 1 1 2.7e-12 2.9e-11 32.9 0.0 1 45 10 54 10 60 0.87 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 HTH_23 PF13384.1 50 1.1e-05 14.9 0.3 1 1 2.4e-06 2.6e-05 13.7 0.3 13 38 15 39 6 47 0.81 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 HTH_19 PF12844.2 64 6.2e-10 28.9 0.0 1 1 7.1e-11 7.8e-10 28.6 0.0 1 36 7 42 7 57 0.91 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_11 - 222 HTH_Tnp_1_2 PF13022.1 142 3.4e-05 13.4 0.1 1 1 4.8e-06 5.3e-05 12.8 0.1 10 74 2 63 1 70 0.80 # 8596 # 9261 # -1 # ID=1_11;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.592 1_10 - 105 HTH_31 PF13560.1 64 5.3e-11 32.5 5.1 1 2 1.9e-11 2.1e-10 30.6 4.3 3 55 7 58 6 68 0.92 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 HTH_31 PF13560.1 64 5.3e-11 32.5 5.1 2 2 0.045 0.49 0.6 0.0 19 45 68 93 66 95 0.81 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 HTH_36 PF13730.1 55 5.1e-05 13.2 0.0 1 2 9.1e-05 0.001 9.1 0.0 26 45 19 38 13 39 0.88 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 HTH_36 PF13730.1 55 5.1e-05 13.2 0.0 2 2 0.015 0.16 2.0 0.0 31 51 54 74 44 76 0.85 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 Phage_CII PF05269.6 91 3.5e-05 13.7 0.0 1 1 3.5e-06 3.8e-05 13.5 0.0 24 45 19 40 8 84 0.86 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_10 - 105 HTH_26 PF13443.1 63 4.3e-06 16.7 0.0 1 1 6.2e-07 6.8e-06 16.1 0.0 9 35 17 43 10 57 0.89 # 8295 # 8609 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_5 - 195 ATP-synt_B PF00430.13 132 0.00091 8.9 12.1 1 2 0.00023 0.0025 7.4 3.7 26 89 16 79 10 80 0.94 # 2338 # 2922 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_5 - 195 ATP-synt_B PF00430.13 132 0.00091 8.9 12.1 2 2 1.9e-05 0.00021 10.9 3.8 32 79 62 110 55 115 0.86 # 2338 # 2922 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 1_9 - 308 DDE_Tnp_1_5 PF13737.1 112 2.9e-49 155.8 0.1 1 2 4.6e-49 5.1e-48 151.8 0.0 1 112 19 130 19 130 0.96 # 6992 # 7915 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 1_9 - 308 DDE_Tnp_1_5 PF13737.1 112 2.9e-49 155.8 0.1 2 2 0.031 0.35 0.9 0.0 42 68 263 291 234 297 0.82 # 6992 # 7915 # 1 # ID=1_9;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.541 1_11 - 222 HTH_20 PF12840.2 61 4.9e-05 13.0 0.1 1 1 2.1e-05 0.00024 10.8 0.0 22 46 24 48 9 55 0.87 # 8596 # 9261 # -1 # ID=1_11;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.592 1_5 - 195 AAA_13 PF13166.1 712 0.00011 10.5 2.7 1 1 1.2e-05 0.00013 10.2 2.7 93 377 17 100 1 120 0.30 # 2338 # 2922 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.499 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/51f34e42-9494-456b-9981-da44523cb81e # Target file: checkm_output/bins/pm1267/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1267/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/51f34e42-9494-456b-9981-da44523cb81e checkm_output/bins/pm1267/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:38:55 2017 # [ok]