# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 323 KaiC PF06745.8 227 0.00013 13.4 0.1 1 1 4.3e-06 0.00026 12.3 0.1 12 43 33 63 27 153 0.79 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_62 - 179 HTH_IclR PF09339.5 52 9.9e-06 17.4 1.7 1 2 4.4e-05 0.0027 9.6 0.0 16 37 38 59 25 68 0.84 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_62 - 179 HTH_IclR PF09339.5 52 9.9e-06 17.4 1.7 2 2 0.00052 0.032 6.2 0.5 30 40 127 137 125 138 0.90 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 323 ABC_tran PF00005.22 137 4.4e-06 19.3 0.1 1 1 1.4e-07 8.5e-06 18.4 0.1 2 90 31 120 30 159 0.75 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_5 - 187 HTH_22 PF13309.1 64 0.0001 14.3 0.1 1 1 5.7e-05 0.0018 10.3 0.0 45 61 161 177 158 180 0.84 # 3274 # 3834 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.560 1_60 - 298 HTH_22 PF13309.1 64 0.0005 12.1 0.3 1 2 0.0045 0.14 4.3 0.0 24 48 6 30 4 33 0.91 # 47442 # 48335 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_60 - 298 HTH_22 PF13309.1 64 0.0005 12.1 0.3 2 2 0.0028 0.088 4.9 0.2 1 33 104 136 104 140 0.92 # 47442 # 48335 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_17 - 425 Cdd1 PF11731.3 93 0.0002 13.5 0.0 1 1 7.5e-06 0.00047 12.4 0.0 10 47 178 215 141 227 0.84 # 12589 # 13863 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_62 - 179 HTH_38 PF13936.1 44 5.9e-08 24.5 0.3 1 2 1.1e-08 6.7e-07 21.1 0.0 10 41 30 61 26 62 0.89 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_62 - 179 HTH_38 PF13936.1 44 5.9e-08 24.5 0.3 2 2 0.024 1.5 0.8 0.1 33 42 128 137 126 139 0.88 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 323 MobB PF03205.9 140 0.0002 13.3 0.1 1 1 1.1e-05 0.00069 11.6 0.0 2 31 42 70 41 86 0.78 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_4 - 375 HTH_Tnp_4 PF13613.1 53 0.00011 14.1 0.4 1 1 7e-06 0.00043 12.1 0.0 26 44 38 56 35 57 0.90 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_8 - 372 DUF3584 PF12128.3 1201 0.056 2.9 61.6 1 1 0.0098 0.61 -0.6 61.5 261 533 79 352 68 366 0.57 # 6182 # 7297 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_5 - 187 TetR_N PF00440.18 47 0.00013 13.9 0.5 1 2 0.027 1.7 0.7 0.0 11 21 3 13 1 13 0.83 # 3274 # 3834 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.560 1_5 - 187 TetR_N PF00440.18 47 0.00013 13.9 0.5 2 2 2.2e-05 0.0013 10.6 0.1 16 35 158 177 149 179 0.89 # 3274 # 3834 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.560 1_2 - 323 AAA_19 PF13245.1 76 4e-05 15.6 0.3 1 1 3.3e-06 0.0002 13.3 0.1 6 37 36 67 32 119 0.75 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_14 - 322 CbiA PF01656.18 195 9.9e-19 59.7 0.0 1 1 3.4e-20 2.1e-18 58.6 0.0 1 140 111 290 111 308 0.75 # 10329 # 11294 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_2 - 323 PRK PF00485.13 194 0.0002 13.1 0.0 1 1 7e-06 0.00043 12.1 0.0 1 38 42 81 42 132 0.66 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_16 - 290 Sigma70_r4_2 PF08281.7 54 0.00029 12.5 0.0 1 1 2.8e-05 0.00086 11.1 0.0 24 50 158 184 153 185 0.89 # 11534 # 12403 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_4 - 375 Sigma70_r4_2 PF08281.7 54 0.012 7.4 5.2 1 2 0.054 1.7 0.5 0.3 2 14 14 26 13 27 0.89 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_4 - 375 Sigma70_r4_2 PF08281.7 54 0.012 7.4 5.2 2 2 0.0002 0.0063 8.3 0.1 30 52 35 57 33 57 0.88 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_40 - 330 Rep_3 PF01051.16 222 5.2e-33 106.7 0.2 1 1 1.2e-34 7.6e-33 106.1 0.2 3 214 14 269 13 275 0.91 # 32694 # 33683 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_4 - 375 rve PF00665.21 120 4.6e-13 41.6 0.0 1 1 3.5e-14 1.1e-12 40.4 0.0 2 118 157 298 156 300 0.89 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_1 - 159 rve PF00665.21 120 2.2e-11 36.2 0.0 1 1 1.3e-12 3.9e-11 35.4 0.0 18 118 19 118 5 120 0.91 # 2 # 478 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 1_62 - 179 Terminase_5 PF06056.7 58 4.1e-05 15.4 0.0 1 1 2.1e-06 0.00013 13.8 0.0 3 35 30 62 28 85 0.85 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 323 AAA_30 PF13604.1 196 0.00011 14.1 0.4 1 1 5.3e-06 0.00033 12.5 0.4 15 128 38 164 27 169 0.55 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_16 - 290 CPSase_L_D3 PF02787.14 123 9.9e-05 14.4 0.6 1 1 5e-06 0.00031 12.8 0.1 49 98 134 186 125 191 0.83 # 11534 # 12403 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_22 - 727 TraG-D_C PF12696.2 128 5.1e-21 67.1 0.0 1 2 0.097 6 -1.0 0.0 12 60 196 243 193 247 0.85 # 16932 # 19112 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_22 - 727 TraG-D_C PF12696.2 128 5.1e-21 67.1 0.0 2 2 4.3e-22 2.6e-20 64.8 0.0 1 127 419 541 419 542 0.87 # 16932 # 19112 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_1 - 159 DDE_3 PF13358.1 146 7.6e-27 86.1 0.1 1 1 1.5e-28 9.1e-27 85.8 0.1 17 138 5 123 1 132 0.95 # 2 # 478 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.505 1_14 - 322 MipZ PF09140.6 261 1.8e-06 19.4 0.0 1 2 0.0018 0.11 3.7 0.0 3 50 111 163 109 201 0.73 # 10329 # 11294 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_14 - 322 MipZ PF09140.6 261 1.8e-06 19.4 0.0 2 2 2e-06 0.00012 13.4 0.0 86 136 232 282 220 303 0.87 # 10329 # 11294 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_8 - 372 DUF2316 PF10078.4 89 0.0099 8.2 9.4 1 2 0.00018 0.011 8.0 2.7 5 45 198 238 193 249 0.88 # 6182 # 7297 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_8 - 372 DUF2316 PF10078.4 89 0.0099 8.2 9.4 2 2 0.008 0.49 2.7 0.6 5 42 251 288 246 300 0.86 # 6182 # 7297 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_2 - 323 AAA PF00004.24 132 1e-06 21.3 0.0 1 1 3.7e-08 2.3e-06 20.1 0.0 3 96 45 151 43 180 0.68 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_16 - 290 HTH_37 PF13744.1 80 6.2e-05 15.0 1.2 1 2 0.0078 0.48 2.6 0.1 27 55 9 37 6 43 0.82 # 11534 # 12403 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_16 - 290 HTH_37 PF13744.1 80 6.2e-05 15.0 1.2 2 2 2.9e-05 0.0018 10.4 0.1 27 53 156 182 129 186 0.92 # 11534 # 12403 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_2 - 323 TIGR00064 TIGR00064 279 4.4e-05 14.7 0.2 1 1 1.4e-06 8.6e-05 13.7 0.0 72 111 33 72 4 76 0.73 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_16 PF13191.1 185 2.6e-11 36.0 1.3 1 1 9.1e-12 2.8e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_22 - 727 AAA_16 PF13191.1 185 0.00011 14.4 0.0 1 1 1.3e-05 0.0004 12.6 0.0 21 55 182 216 179 246 0.85 # 16932 # 19112 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 323 AAA_22 PF13401.1 131 3.2e-16 51.9 0.3 1 1 1.1e-17 7e-16 50.8 0.3 3 129 39 170 36 172 0.77 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_60 - 298 HTH_1 PF00126.22 60 2.3e-16 51.6 0.0 1 1 1.2e-17 7.2e-16 50.0 0.0 2 60 7 65 6 65 0.96 # 47442 # 48335 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_62 - 179 LZ_Tnp_IS481 PF13011.1 85 9.1e-07 21.5 0.2 1 1 3.1e-08 1.9e-06 20.4 0.2 12 69 27 82 14 90 0.91 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_62 - 179 HTH_32 PF13565.1 77 5e-14 45.2 1.5 1 2 0.012 0.37 3.9 0.1 31 74 22 58 5 59 0.72 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_62 - 179 HTH_32 PF13565.1 77 5e-14 45.2 1.5 2 2 2.5e-14 7.8e-13 41.4 0.3 1 77 56 136 56 136 0.82 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 375 HTH_32 PF13565.1 77 7.8e-06 18.9 6.2 1 3 0.002 0.061 6.5 0.1 33 77 11 52 2 52 0.67 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_4 - 375 HTH_32 PF13565.1 77 7.8e-06 18.9 6.2 2 3 0.00064 0.02 8.0 0.1 21 64 61 114 54 120 0.69 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_4 - 375 HTH_32 PF13565.1 77 7.8e-06 18.9 6.2 3 3 0.0035 0.11 5.7 0.1 1 18 131 148 131 160 0.79 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_62 - 179 HTH_3 PF01381.17 55 0.00047 12.3 0.0 1 1 3e-05 0.0019 10.4 0.0 2 31 33 62 32 62 0.92 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_62 - 179 HTH_23 PF13384.1 50 1.8e-12 38.8 1.5 1 1 4e-13 8.3e-12 36.7 0.0 3 50 26 73 24 73 0.94 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 375 HTH_23 PF13384.1 50 9e-05 14.4 6.9 1 2 6.7e-05 0.0014 10.6 0.1 20 39 34 53 29 57 0.88 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_4 - 375 HTH_23 PF13384.1 50 9e-05 14.4 6.9 2 2 0.0011 0.023 6.8 0.5 32 42 130 140 128 147 0.84 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_5 - 187 HTH_23 PF13384.1 50 0.00025 13.0 0.0 1 1 3.4e-05 0.0007 11.6 0.0 12 41 152 182 148 185 0.79 # 3274 # 3834 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.560 1_5 - 187 HTH_7 PF02796.10 45 1.8e-08 26.4 0.0 1 1 2e-09 4e-08 25.3 0.0 1 39 140 176 140 180 0.94 # 3274 # 3834 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.560 1_4 - 375 HTH_7 PF02796.10 45 1.1e-05 17.6 0.1 1 1 1.7e-06 3.5e-05 15.9 0.1 23 43 33 53 29 54 0.92 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_62 - 179 HTH_7 PF02796.10 45 5.7e-05 15.2 0.3 1 2 7.2e-05 0.0015 10.7 0.0 15 38 34 57 16 62 0.83 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_62 - 179 HTH_7 PF02796.10 45 5.7e-05 15.2 0.3 2 2 0.029 0.6 2.3 0.1 35 43 129 137 119 139 0.79 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 323 NB-ARC PF00931.17 287 0.00024 12.2 0.3 1 1 5.9e-06 0.00037 11.6 0.3 8 104 29 126 22 144 0.74 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_62 - 179 HTH_29 PF13551.1 112 5.1e-20 64.0 0.2 1 1 4.1e-21 8.6e-20 63.3 0.2 1 111 30 139 30 140 0.92 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 375 HTH_29 PF13551.1 112 2.5e-06 19.9 0.4 1 2 1.8e-05 0.00037 12.9 0.0 14 91 33 109 24 121 0.65 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_4 - 375 HTH_29 PF13551.1 112 2.5e-06 19.9 0.4 2 2 0.007 0.14 4.6 0.0 25 45 128 148 125 155 0.80 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_5 - 187 HTH_29 PF13551.1 112 0.00035 13.0 1.2 1 2 0.067 1.4 1.4 0.1 32 62 120 149 104 156 0.71 # 3274 # 3834 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.560 1_5 - 187 HTH_29 PF13551.1 112 0.00035 13.0 1.2 2 2 0.00024 0.005 9.3 0.0 10 38 157 184 152 185 0.90 # 3274 # 3834 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.560 1_2 - 323 Arch_ATPase PF01637.13 234 2.3e-05 16.4 0.2 1 1 8.6e-07 5.3e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_5 PF07728.9 139 5.2e-05 15.2 0.2 1 1 7e-06 0.00044 12.2 0.2 5 90 46 149 43 152 0.85 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 ResIII PF04851.10 184 6.8e-06 18.2 0.2 1 2 2e-05 0.0013 10.8 0.3 29 100 44 109 20 117 0.72 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 ResIII PF04851.10 184 6.8e-06 18.2 0.2 2 2 0.00043 0.026 6.5 0.0 129 162 107 140 84 153 0.64 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_22 - 727 TrwB_AAD_bind PF10412.4 386 4e-145 475.4 0.0 1 1 1.6e-146 5e-145 475.1 0.0 2 386 172 561 171 561 0.99 # 16932 # 19112 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 323 TrwB_AAD_bind PF10412.4 386 8.4e-05 13.5 0.5 1 3 3.3e-05 0.001 9.9 0.0 14 44 39 69 35 76 0.83 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 TrwB_AAD_bind PF10412.4 386 8.4e-05 13.5 0.5 2 3 0.042 1.3 -0.3 0.0 234 275 115 158 112 169 0.78 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 TrwB_AAD_bind PF10412.4 386 8.4e-05 13.5 0.5 3 3 0.073 2.3 -1.1 0.0 128 182 251 306 240 311 0.71 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_18 PF13238.1 129 5.7e-05 15.7 0.0 1 1 1.7e-06 0.0001 14.9 0.0 1 23 43 90 43 139 0.67 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_17 - 425 IMS_HHH PF11798.3 32 2.2e-08 26.2 0.1 1 1 7.8e-10 4.9e-08 25.0 0.1 5 32 174 201 169 201 0.89 # 12589 # 13863 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_9 - 170 TIGR01406 TIGR01406 231 0.0002 12.9 0.0 1 1 5e-06 0.00031 12.3 0.0 3 59 106 156 105 159 0.81 # 7290 # 7799 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.594 1_2 - 323 DUF87 PF01935.12 229 0.00031 12.8 0.2 1 3 5.2e-05 0.0032 9.5 0.0 26 52 43 69 40 73 0.85 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 DUF87 PF01935.12 229 0.00031 12.8 0.2 2 3 0.083 5.1 -1.0 0.0 135 194 79 139 68 151 0.68 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 DUF87 PF01935.12 229 0.00031 12.8 0.2 3 3 0.052 3.2 -0.3 0.0 119 195 196 299 168 308 0.64 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_62 - 179 HTH_28 PF13518.1 52 1.8e-10 32.9 0.1 1 1 6.9e-11 1.4e-09 30.1 0.0 1 50 29 79 29 82 0.91 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 375 HTH_28 PF13518.1 52 2.3e-05 16.6 2.3 1 2 3.4e-05 0.00069 11.9 0.0 15 35 34 54 32 64 0.90 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_4 - 375 HTH_28 PF13518.1 52 2.3e-05 16.6 2.3 2 2 0.024 0.49 2.8 0.4 26 37 129 140 125 145 0.87 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_5 - 187 HTH_28 PF13518.1 52 0.00044 12.5 0.3 1 1 2.1e-05 0.00044 12.5 0.3 4 30 149 176 148 184 0.84 # 3274 # 3834 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.560 1_2 - 323 TIGR00041 TIGR00041 196 0.0002 13.0 0.0 1 1 5.7e-06 0.00035 12.2 0.0 2 54 38 96 37 122 0.74 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_16 - 290 HTH_24 PF13412.1 48 4.6e-05 15.1 2.1 1 1 1.1e-06 6.7e-05 14.5 0.0 13 39 157 182 153 184 0.84 # 11534 # 12403 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.452 1_62 - 179 HTH_33 PF13592.1 60 2.1e-10 32.3 0.9 1 1 8e-12 5e-10 31.1 0.3 3 50 108 155 107 157 0.94 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 323 DUF2075 PF09848.4 352 1.1e-06 20.1 0.1 1 1 2.6e-08 1.6e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_53 - 117 HTH_OrfB_IS605 PF12323.3 46 5.1e-19 59.7 0.0 1 1 1.3e-20 8.1e-19 59.0 0.0 1 45 1 45 1 46 0.98 # 41331 # 41681 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.462 1_2 - 323 T2SE PF00437.15 272 1.7e-06 19.3 0.7 1 1 1.3e-07 8.1e-06 17.1 0.7 110 161 22 72 6 137 0.81 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 NACHT PF05729.7 166 0.0003 12.7 0.2 1 1 1.2e-05 0.00071 11.5 0.2 1 28 41 68 41 141 0.77 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 UPF0079 PF02367.12 123 7.2e-05 14.7 0.0 1 1 2.2e-06 0.00013 13.8 0.0 3 45 28 70 26 114 0.84 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_17 PF13207.1 121 7.9e-05 15.7 0.0 1 1 3.4e-06 0.00021 14.4 0.0 1 40 42 89 42 183 0.61 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 TIGR02211 TIGR02211 221 0.00029 12.3 0.0 1 1 7.3e-06 0.00046 11.7 0.0 11 51 20 60 12 86 0.88 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_14 PF13173.1 128 2.6e-06 19.6 0.0 1 1 1.8e-07 1.1e-05 17.6 0.0 2 96 40 164 39 191 0.62 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_4 - 375 HTH_Tnp_ISL3 PF13542.1 52 0.00019 12.9 0.3 1 1 1.7e-05 0.00052 11.5 0.0 30 49 34 53 32 55 0.90 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_62 - 179 HTH_Tnp_ISL3 PF13542.1 52 0.00027 12.4 0.4 1 1 8.8e-06 0.00027 12.4 0.4 18 49 30 62 26 62 0.79 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 323 AAA_33 PF13671.1 143 0.0001 14.5 0.0 1 1 3.7e-06 0.00023 13.3 0.0 1 45 42 100 42 132 0.60 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_22 - 727 T4SS-DNA_transf PF02534.9 469 3.3e-12 37.8 0.0 1 1 9.3e-14 5.8e-12 37.1 0.0 274 392 392 506 361 543 0.81 # 16932 # 19112 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_8 - 372 TIGR00422 TIGR00422 863 0.0081 6.0 17.3 1 1 0.00016 0.0099 5.7 16.6 719 856 133 270 77 276 0.83 # 6182 # 7297 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_30 - 195 Glyco_trans_1_3 PF13528.1 318 5e-05 14.8 0.0 1 1 1.2e-06 7.6e-05 14.2 0.0 144 213 19 89 3 96 0.72 # 23095 # 23679 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.586 1_62 - 179 HTH_17 PF12728.2 51 2.9e-05 16.5 0.1 1 2 2.9e-05 0.00089 11.8 0.0 2 45 41 90 40 92 0.87 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_62 - 179 HTH_17 PF12728.2 51 2.9e-05 16.5 0.1 2 2 0.027 0.84 2.3 0.0 13 25 127 139 122 152 0.87 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_4 - 375 HTH_17 PF12728.2 51 0.00052 12.5 0.0 1 1 0.00012 0.0039 9.7 0.0 8 45 38 79 34 82 0.65 # 2166 # 3290 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.558 1_39 - 129 BOF PF04076.8 103 5e-43 137.5 0.8 1 1 9.6e-45 5.9e-43 137.2 0.8 2 102 25 125 24 126 0.98 # 31805 # 32191 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 1_2 - 323 PIF1 PF05970.9 364 2.2e-05 15.7 0.0 1 1 6.3e-07 3.9e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_9 - 170 RNase_T PF00929.19 164 2.7e-07 23.2 0.0 1 1 6.3e-09 3.9e-07 22.7 0.0 1 55 106 152 106 158 0.89 # 7290 # 7799 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.594 1_22 - 727 AAA_10 PF12846.2 304 5.1e-07 21.6 0.0 1 2 0.0026 0.08 4.5 0.0 3 43 187 227 186 245 0.93 # 16932 # 19112 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_22 - 727 AAA_10 PF12846.2 304 5.1e-07 21.6 0.0 2 2 2.1e-06 6.6e-05 14.6 0.0 200 295 397 493 265 498 0.83 # 16932 # 19112 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.541 1_2 - 323 AAA_10 PF12846.2 304 6.4e-07 21.2 0.1 1 3 8.4e-06 0.00026 12.7 0.0 3 34 42 73 40 106 0.73 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_10 PF12846.2 304 6.4e-07 21.2 0.1 2 3 0.0016 0.051 5.2 0.0 216 244 120 149 78 165 0.79 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_2 - 323 AAA_10 PF12846.2 304 6.4e-07 21.2 0.1 3 3 0.075 2.3 -0.3 0.0 106 170 239 301 181 315 0.58 # 667 # 1635 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.542 1_40 - 330 HTH_20 PF12840.2 61 0.00021 13.4 0.0 1 2 0.0057 0.18 4.0 0.0 24 46 106 128 101 129 0.89 # 32694 # 33683 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_40 - 330 HTH_20 PF12840.2 61 0.00021 13.4 0.0 2 2 0.00075 0.023 6.8 0.0 19 58 217 263 190 266 0.79 # 32694 # 33683 # -1 # ID=1_40;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_62 - 179 HTH_20 PF12840.2 61 0.0072 8.4 5.9 1 1 0.0001 0.0031 9.6 0.1 13 38 29 54 24 59 0.84 # 48944 # 49480 # 1 # ID=1_62;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.533 1_8 - 372 AAA_13 PF13166.1 712 0.072 3.6 35.8 1 2 0.00055 0.034 4.7 28.2 273 455 74 262 53 280 0.68 # 6182 # 7297 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_8 - 372 AAA_13 PF13166.1 712 0.072 3.6 35.8 2 2 0.0075 0.47 1.0 25.4 279 476 159 354 153 363 0.51 # 6182 # 7297 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_14 - 322 AAA_31 PF13614.1 157 0.00018 13.7 0.1 1 2 0.043 2.6 0.2 0.0 9 63 117 176 109 210 0.56 # 10329 # 11294 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_14 - 322 AAA_31 PF13614.1 157 0.00018 13.7 0.1 2 2 2.3e-05 0.0014 10.8 0.0 108 147 235 273 231 279 0.86 # 10329 # 11294 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.465 1_17 - 425 DNA_pol_lambd_f PF10391.4 52 0.00021 13.1 0.0 1 1 1e-05 0.00064 11.5 0.0 5 29 183 207 179 218 0.85 # 12589 # 13863 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.538 1_12 - 314 Glyco_trans_4_3 PF12000.3 171 8.3e-06 17.7 0.1 1 2 0.00077 0.048 5.5 0.0 14 84 112 182 97 188 0.79 # 8973 # 9914 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_12 - 314 Glyco_trans_4_3 PF12000.3 171 8.3e-06 17.7 0.1 2 2 3.4e-05 0.0021 9.9 0.0 19 65 209 256 201 261 0.90 # 8973 # 9914 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/29eab6cc-1feb-453a-ae1f-cbe46791b756 # Target file: checkm_output/bins/pm1264/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1264/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/29eab6cc-1feb-453a-ae1f-cbe46791b756 checkm_output/bins/pm1264/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:38:55 2017 # [ok]