# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 340 HTH_DeoR PF08220.7 57 1.3e-05 12.7 0.0 1 2 0.014 0.042 1.5 0.0 11 37 144 169 141 174 0.77 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_DeoR PF08220.7 57 1.3e-05 12.7 0.0 2 2 0.0001 0.00031 8.3 0.0 16 33 305 322 303 327 0.92 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_38 PF13936.1 44 4e-06 14.4 0.0 1 2 0.02 0.059 1.1 0.0 14 35 141 162 138 163 0.88 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_38 PF13936.1 44 4e-06 14.4 0.0 2 2 2.4e-05 7.2e-05 10.4 0.0 9 40 292 323 289 325 0.90 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 Sigma70_r4_2 PF08281.7 54 4.3e-09 23.8 0.1 1 2 0.0047 0.014 3.0 0.0 23 42 144 163 139 166 0.84 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 Sigma70_r4_2 PF08281.7 54 4.3e-09 23.8 0.1 2 2 8.7e-08 2.6e-07 18.1 0.0 14 47 292 324 290 325 0.94 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 Terminase_5 PF06056.7 58 8.8e-07 16.5 0.0 1 1 9.2e-07 2.8e-06 14.9 0.0 1 36 291 326 291 331 0.92 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_Tnp_1 PF01527.15 76 1e-05 13.5 0.1 1 1 1.1e-05 3.3e-05 11.9 0.1 9 45 290 325 283 334 0.87 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 GerE PF00196.14 58 2.6e-07 17.9 0.0 1 2 0.00074 0.0022 5.4 0.0 8 32 137 161 136 163 0.95 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 GerE PF00196.14 58 2.6e-07 17.9 0.0 2 2 2.6e-05 7.9e-05 10.0 0.0 11 36 296 321 290 326 0.86 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 Sigma70_r4 PF04545.11 50 7.7e-07 16.4 0.0 1 2 6e-05 0.00018 8.9 0.0 9 39 137 166 136 170 0.77 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 Sigma70_r4 PF04545.11 50 7.7e-07 16.4 0.0 2 2 0.00086 0.0026 5.2 0.0 10 39 294 322 290 326 0.79 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_23 PF13384.1 50 3e-11 30.8 0.3 1 1 5.8e-11 1.8e-10 28.4 0.0 4 38 290 324 287 328 0.93 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_29 PF13551.1 112 1.7e-05 12.9 2.4 1 2 0.054 0.16 0.2 0.1 25 71 241 288 229 300 0.72 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_29 PF13551.1 112 1.7e-05 12.9 2.4 2 2 1.9e-05 5.6e-05 11.3 0.1 1 34 293 325 293 330 0.84 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_28 PF13518.1 52 1.1e-07 19.9 1.0 1 1 7e-08 2.1e-07 19.0 0.1 1 34 292 325 292 330 0.93 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_31 PF13560.1 64 6.7e-05 11.1 1.8 1 2 0.074 0.22 -0.2 0.1 10 29 144 162 139 167 0.65 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_31 PF13560.1 64 6.7e-05 11.1 1.8 2 2 6.6e-05 0.0002 9.6 0.2 10 35 293 324 257 330 0.90 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_Tnp_ISL3 PF13542.1 52 1.3e-05 12.4 0.5 1 1 1.5e-05 4.5e-05 10.7 0.3 28 49 304 325 293 327 0.84 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_17 PF12728.2 51 3.5e-08 21.7 0.3 1 3 0.00084 0.0025 6.1 0.0 2 16 148 162 147 167 0.91 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_17 PF12728.2 51 3.5e-08 21.7 0.3 2 3 0.055 0.16 0.3 0.0 13 25 182 194 177 198 0.84 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_17 PF12728.2 51 3.5e-08 21.7 0.3 3 3 3.1e-05 9.4e-05 10.7 0.0 3 24 305 326 304 336 0.90 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_11 PF08279.7 55 3.8e-06 14.6 0.1 1 2 0.0019 0.0056 4.4 0.0 15 30 146 162 138 169 0.80 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 HTH_11 PF08279.7 55 3.8e-06 14.6 0.1 2 2 0.00022 0.00066 7.4 0.0 17 34 305 322 302 326 0.89 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 Sigma70_ECF PF07638.6 185 1e-05 13.2 0.2 1 2 0.036 0.11 0.1 0.0 151 174 147 173 137 184 0.73 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_2 - 340 Sigma70_ECF PF07638.6 185 1e-05 13.2 0.2 2 2 2.1e-05 6.3e-05 10.6 0.1 135 181 288 333 264 336 0.80 # 860 # 1879 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/845fd489-3a37-40b7-a89c-18a1b642499c # Target file: checkm_output/bins/pm1261/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1261/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/845fd489-3a37-40b7-a89c-18a1b642499c checkm_output/bins/pm1261/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:38:48 2017 # [ok]