# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 205 HTH_22 PF13309.1 64 3.1e-05 13.6 0.0 1 1 5.7e-06 6.3e-05 12.6 0.0 45 63 169 187 167 188 0.90 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_4 - 275 rve_3 PF13683.1 67 8.4e-06 15.1 0.0 1 1 1.6e-06 1.8e-05 14.1 0.0 2 35 142 175 141 184 0.87 # 4367 # 5191 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_7 - 205 HTH_8 PF02954.14 42 1.2e-06 17.9 0.7 1 2 0.011 0.12 1.9 0.3 2 11 118 127 117 128 0.86 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_7 - 205 HTH_8 PF02954.14 42 1.2e-06 17.9 0.7 2 2 2.3e-06 2.5e-05 13.6 0.0 21 37 169 185 159 188 0.81 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_7 - 205 TetR_N PF00440.18 47 3.6e-05 13.3 0.0 1 1 1.5e-05 0.00016 11.2 0.0 15 36 165 186 159 186 0.90 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_4 - 275 rve PF00665.21 120 5.6e-14 42.1 0.0 1 1 9.6e-14 1.1e-12 38.0 0.0 4 119 67 169 64 170 0.93 # 4367 # 5191 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_5 - 132 CPSase_L_D3 PF02787.14 123 7.2e-05 12.4 0.4 1 2 0.00018 0.0019 7.8 0.0 8 37 24 53 17 73 0.74 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_5 - 132 CPSase_L_D3 PF02787.14 123 7.2e-05 12.4 0.4 2 2 0.0053 0.058 3.0 0.1 44 81 88 123 80 130 0.78 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_5 - 132 HTH_Tnp_1 PF01527.15 76 5e-23 70.8 0.4 1 1 1.6e-23 8.8e-23 70.0 0.4 2 74 18 97 17 99 0.96 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_7 - 205 HTH_Tnp_1 PF01527.15 76 5.8e-05 12.9 0.0 1 1 2.2e-05 0.00012 11.8 0.0 21 47 164 190 152 200 0.75 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_5 - 132 MerR_1 PF13411.1 69 1.2e-05 14.9 0.1 1 1 3.5e-06 3.9e-05 13.3 0.0 1 25 40 64 40 74 0.91 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_5 - 132 LZ_Tnp_IS481 PF13011.1 85 5.5e-05 13.3 0.1 1 1 9.2e-06 0.0001 12.5 0.1 9 55 23 69 17 96 0.85 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_5 - 132 HTH_23 PF13384.1 50 5.3e-10 28.6 0.2 1 1 2.8e-10 1.6e-09 27.1 0.0 3 42 24 64 22 78 0.89 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_7 - 205 HTH_23 PF13384.1 50 1.9e-05 14.2 0.0 1 1 6.5e-06 3.6e-05 13.3 0.0 5 38 154 187 150 198 0.83 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_7 - 205 HTH_7 PF02796.10 45 2.9e-07 20.2 0.1 1 1 6.1e-08 6.7e-07 19.0 0.1 20 40 165 185 145 188 0.71 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_4 - 275 HTH_CodY PF08222.6 61 5.2e-05 12.4 0.0 1 2 0.00033 0.0037 6.5 0.0 24 49 149 174 146 177 0.90 # 4367 # 5191 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_4 - 275 HTH_CodY PF08222.6 61 5.2e-05 12.4 0.0 2 2 0.003 0.033 3.4 0.1 5 34 206 237 203 245 0.81 # 4367 # 5191 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 1_5 - 132 HTH_29 PF13551.1 112 1.4e-06 18.3 0.5 1 1 4.8e-07 2.6e-06 17.4 0.1 8 68 36 95 28 114 0.72 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_7 - 205 HTH_29 PF13551.1 112 2.6e-06 17.4 0.5 1 2 0.0097 0.053 3.5 0.2 37 61 130 153 123 165 0.78 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_7 - 205 HTH_29 PF13551.1 112 2.6e-06 17.4 0.5 2 2 2.9e-05 0.00016 11.7 0.0 11 36 163 190 155 203 0.73 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_5 - 132 HTH_28 PF13518.1 52 5.4e-09 25.8 0.0 1 1 9.8e-10 5.4e-09 25.8 0.0 1 38 27 65 27 70 0.95 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_7 - 205 HTH_28 PF13518.1 52 4.3e-05 13.4 0.0 1 1 1.8e-05 0.0001 12.2 0.0 14 33 168 187 155 188 0.73 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_7 - 205 Mga PF05043.8 87 5.3e-06 16.5 0.0 1 1 7.4e-07 8.1e-06 16.0 0.0 18 56 154 192 117 202 0.87 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_5 - 132 HTH_Tnp_ISL3 PF13542.1 52 9.4e-05 11.4 0.4 1 1 2.7e-05 0.0003 9.8 0.0 8 42 19 54 18 56 0.81 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_5 - 132 CENP-B_N PF04218.8 53 1.2e-07 21.0 0.2 1 1 2e-08 2.2e-07 20.1 0.2 4 45 20 62 18 66 0.86 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_7 - 205 HTH_26 PF13443.1 63 1.8e-05 14.8 0.0 1 1 8.2e-06 4.5e-05 13.5 0.0 1 31 154 187 154 196 0.88 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_5 - 132 HTH_26 PF13443.1 63 4.5e-05 13.5 0.2 1 1 2.3e-05 0.00013 12.0 0.0 10 41 39 69 31 73 0.88 # 5320 # 5715 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.530 1_7 - 205 HTH_11 PF08279.7 55 1.2e-06 18.0 0.0 1 1 2.8e-07 3.1e-06 16.7 0.0 14 37 165 188 157 200 0.86 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_7 - 205 HTH_20 PF12840.2 61 4.5e-05 13.1 0.2 1 1 1.1e-05 0.00012 11.7 0.0 27 45 169 187 154 189 0.88 # 7059 # 7673 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_4 - 275 HTH_21 PF13276.1 60 9.6e-19 57.1 0.8 1 1 1.7e-19 1.8e-18 56.2 0.8 19 57 7 49 3 58 0.84 # 4367 # 5191 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.527 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/2758c71a-a90d-43e0-85d7-1757fe5d1081 # Target file: checkm_output/bins/pm1252/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1252/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2758c71a-a90d-43e0-85d7-1757fe5d1081 checkm_output/bins/pm1252/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:38:30 2017 # [ok]