# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_32 - 344 KaiC PF06745.8 227 0.00022 12.1 0.0 1 1 8.7e-06 0.00038 11.3 0.0 6 37 150 181 147 187 0.90 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 ABC_tran PF00005.22 137 2.4e-05 16.4 0.0 1 1 1.5e-06 6.6e-05 15.0 0.0 7 32 159 184 155 226 0.85 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 215 HTH_38 PF13936.1 44 0.0033 8.8 5.9 1 2 0.062 2.7 -0.5 0.0 3 20 81 98 79 99 0.86 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_2 - 215 HTH_38 PF13936.1 44 0.0033 8.8 5.9 2 2 1.6e-05 0.00072 10.9 0.2 28 43 191 206 171 207 0.80 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_3 - 221 MobB PF03205.9 140 4.6e-06 18.1 0.7 1 2 2e-05 0.00044 11.7 0.3 2 37 4 40 3 52 0.86 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_3 - 221 MobB PF03205.9 140 4.6e-06 18.1 0.7 2 2 0.0032 0.069 4.6 0.0 44 75 85 119 72 133 0.81 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_32 - 344 MobB PF03205.9 140 5.4e-05 14.7 0.0 1 1 4.3e-06 9.4e-05 13.9 0.0 2 42 165 204 164 227 0.86 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_3 - 221 CbiA PF01656.18 195 1.7e-15 48.6 0.6 1 1 1.1e-16 4.8e-15 47.2 0.6 2 167 6 155 5 180 0.73 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_8 - 279 Rep_3 PF01051.16 222 1.3e-29 95.1 6.3 1 1 3.5e-31 1.6e-29 94.8 6.3 1 222 8 259 8 259 0.88 # 5768 # 6604 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.362 1_32 - 344 AAA_23 PF13476.1 202 0.00015 13.8 0.1 1 1 6.3e-06 0.00028 13.0 0.1 21 38 165 182 152 185 0.88 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 Zeta_toxin PF06414.7 201 6.9e-06 17.0 0.0 1 1 2.5e-07 1.1e-05 16.3 0.0 6 59 153 208 148 232 0.81 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_33 - 612 TraG-D_C PF12696.2 128 1.1e-27 88.1 0.0 1 1 4.3e-29 1.9e-27 87.4 0.0 2 127 416 534 415 535 0.87 # 23570 # 25405 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 221 MipZ PF09140.6 261 3.3e-10 31.2 1.8 1 1 2.5e-09 1.1e-07 22.9 1.3 2 130 4 111 3 132 0.75 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_37 - 718 zf-C4_Topoisom PF01396.14 39 0.00057 11.2 1.3 1 1 2.7e-05 0.0012 10.2 1.3 4 21 635 650 632 661 0.78 # 26993 # 29146 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 1_32 - 344 AAA_16 PF13191.1 185 0.00049 11.8 0.0 1 1 1.5e-05 0.00067 11.4 0.0 22 54 161 194 151 300 0.75 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 AAA_22 PF13401.1 131 0.00026 12.9 0.0 1 1 1e-05 0.00045 12.1 0.0 5 30 164 189 160 241 0.69 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 AAA_29 PF13555.1 62 6.6e-05 14.2 0.0 1 1 3.3e-06 0.00015 13.1 0.0 21 43 161 183 149 186 0.83 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_3 - 221 SRP54 PF00448.17 196 0.00022 12.4 0.1 1 1 1.1e-05 0.00046 11.4 0.1 10 98 12 94 3 134 0.78 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_2 - 215 HTH_32 PF13565.1 77 0.00058 12.4 3.1 1 1 1.3e-05 0.00059 12.4 1.5 8 51 149 188 139 206 0.72 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_2 - 215 HTH_23 PF13384.1 50 5.9e-08 24.0 0.1 1 1 3.3e-09 1.5e-07 22.8 0.1 5 40 171 206 167 212 0.91 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_3 - 221 Fer4_NifH PF00142.13 273 6.7e-07 20.4 0.2 1 1 3.7e-08 1.6e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_2 - 215 HTH_7 PF02796.10 45 1.2e-08 26.6 0.3 1 2 0.00041 0.018 6.8 0.0 2 26 79 104 79 105 0.86 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_2 - 215 HTH_7 PF02796.10 45 1.2e-08 26.6 0.3 2 2 2.1e-07 9.2e-06 17.3 0.0 1 38 165 200 165 200 0.96 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_33 - 612 TrwB_AAD_bind PF10412.4 386 2.1e-21 67.7 0.0 1 1 7.4e-23 3.3e-21 67.0 0.0 165 380 331 548 302 552 0.86 # 23570 # 25405 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.422 1_3 - 221 TIGR01968 TIGR01968 261 1.1e-11 36.0 1.5 1 2 2.9e-10 1.3e-08 25.9 0.7 2 54 3 52 2 60 0.89 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_3 - 221 TIGR01968 TIGR01968 261 1.1e-11 36.0 1.5 2 2 5.8e-05 0.0025 8.5 0.0 101 143 69 111 63 135 0.90 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_32 - 344 DUF258 PF03193.11 161 8.8e-05 13.5 0.0 1 1 3.2e-06 0.00014 12.8 0.0 31 59 158 187 141 220 0.80 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_2 - 215 HTH_28 PF13518.1 52 9.4e-06 17.4 0.2 1 1 6.8e-07 3e-05 15.8 0.2 4 35 175 206 172 206 0.92 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_32 - 344 DEAD PF00270.24 169 9.1e-05 13.7 0.0 1 1 3.6e-06 0.00016 13.0 0.0 6 33 154 182 150 246 0.77 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 T2SE PF00437.15 272 9.5e-54 173.8 0.0 1 1 2.7e-55 1.2e-53 173.4 0.0 12 267 25 312 16 316 0.89 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 UPF0079 PF02367.12 123 0.00019 12.8 0.0 1 1 7.5e-06 0.00033 12.1 0.0 7 39 155 187 149 196 0.83 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 AAA_17 PF13207.1 121 2e-05 17.2 0.0 1 1 1e-06 4.4e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 AAA_25 PF13481.1 194 9.9e-05 13.5 0.0 1 1 3.2e-06 0.00014 13.0 0.0 21 51 151 181 139 248 0.87 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_3 - 221 VirC1 PF07015.6 231 6.3e-09 26.9 0.0 1 1 2.6e-10 1.2e-08 26.1 0.0 3 55 4 56 2 61 0.92 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_32 - 344 AAA_33 PF13671.1 143 6.9e-06 17.7 0.0 1 2 0.07 3.1 -0.6 0.0 7 39 96 127 93 164 0.78 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_32 - 344 AAA_33 PF13671.1 143 6.9e-06 17.7 0.0 2 2 6.8e-07 3e-05 15.7 0.0 2 25 166 191 165 274 0.71 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_3 - 221 ArgK PF03308.11 267 0.00024 11.6 0.1 1 2 1.6e-05 0.0007 10.1 0.1 37 66 11 40 3 45 0.88 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_3 - 221 ArgK PF03308.11 267 0.00024 11.6 0.1 2 2 0.071 3.1 -1.8 0.0 154 174 88 107 63 144 0.54 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_33 - 612 T4SS-DNA_transf PF02534.9 469 3.3e-146 479.2 0.0 1 1 9.2e-148 4e-146 478.9 0.0 2 461 102 571 101 578 0.98 # 23570 # 25405 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.422 1_32 - 344 ATP_bind_1 PF03029.12 238 0.0002 12.7 0.0 1 1 1.4e-05 0.0003 12.1 0.0 2 23 169 190 168 206 0.87 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_3 - 221 ATP_bind_1 PF03029.12 238 0.00036 11.8 0.2 1 1 0.0003 0.0065 7.7 0.2 6 40 13 47 10 115 0.83 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_37 - 718 Toprim_Crpt PF13342.1 62 7e-20 62.3 2.6 1 1 1.6e-21 7e-20 62.3 2.6 1 60 652 711 652 713 0.92 # 26993 # 29146 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 1_2 - 215 HTH_17 PF12728.2 51 2.6e-05 16.2 0.0 1 2 0.0096 0.42 2.7 0.0 16 29 89 102 88 112 0.85 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_2 - 215 HTH_17 PF12728.2 51 2.6e-05 16.2 0.0 2 2 3.7e-05 0.0016 10.5 0.0 5 27 187 209 185 213 0.89 # 1721 # 2365 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.484 1_24 - 918 AAA_10 PF12846.2 304 8.8e-36 115.5 0.0 1 1 3.4e-37 1.5e-35 114.8 0.0 3 294 539 825 538 832 0.93 # 14501 # 17254 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.444 1_3 - 221 ArsA_ATPase PF02374.10 305 3e-09 28.0 0.1 1 1 1.2e-10 5.4e-09 27.2 0.1 4 43 6 45 3 61 0.91 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_3 - 221 AAA_31 PF13614.1 157 3.5e-07 22.0 0.0 1 2 8.5e-07 3.8e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_3 - 221 AAA_31 PF13614.1 157 3.5e-07 22.0 0.0 2 2 0.0021 0.093 4.4 0.0 111 151 73 112 63 115 0.83 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_32 - 344 IstB_IS21 PF01695.12 178 0.00025 12.2 0.0 1 1 1.1e-05 0.00049 11.3 0.0 44 66 160 182 136 186 0.87 # 22536 # 23567 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.411 1_3 - 221 GTP_EFTU PF00009.22 188 1e-07 23.3 0.1 1 1 2.6e-09 1.2e-07 23.1 0.1 15 139 15 153 6 211 0.72 # 2746 # 3408 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 # # Program: hmmsearch # Version: 3.1b1 (May 2013) # Pipeline mode: SEARCH # Query file: /tmp/e486bd5a-8de1-40e5-b9ae-dee034c12adf # Target file: checkm_output/bins/pm1246/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm1246/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e486bd5a-8de1-40e5-b9ae-dee034c12adf checkm_output/bins/pm1246/genes.faa # Current dir: /mnt/data/azomer/reads-for-assembly/files/output/allcontigs/output_1512029421078392887 # Date: Thu Nov 30 09:38:23 2017 # [ok]